Wall clock time and date at job start Tue Mar 31 2020 06:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37990 * 119.77932 * 2 1 4 4 C 1.38918 * 120.06418 * 180.29589 * 3 2 1 5 5 N 1.38844 * 120.17958 * 179.74955 * 4 3 2 6 6 C 1.40442 * 119.64513 * 359.72736 * 4 3 2 7 7 C 1.47288 * 120.21428 * 180.02562 * 6 4 3 8 8 O 1.21523 * 120.00308 * 353.54369 * 7 6 4 9 9 O 1.34768 * 120.00031 * 173.53950 * 7 6 4 10 10 C 1.45196 * 117.00470 * 185.17974 * 9 7 6 11 11 C 1.52996 * 109.47446 * 175.24809 * 10 9 7 12 12 C 1.50701 * 115.54726 * 306.45836 * 11 10 9 13 13 H 1.08009 * 119.99787 * 144.19589 * 12 11 10 14 14 C 1.37874 * 120.00331 * 324.19863 * 12 11 10 15 15 N 1.31512 * 120.00028 * 3.25939 * 14 12 11 16 16 Si 1.86804 * 120.00014 * 183.25961 * 14 12 11 17 17 H 1.48501 * 109.46894 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46657 * 119.99955 * 16 14 12 19 19 H 1.48496 * 109.47318 * 239.99880 * 16 14 12 20 20 C 1.53001 * 117.49959 * 160.79443 * 11 10 9 21 21 C 1.52994 * 117.49985 * 92.13091 * 11 10 9 22 22 C 1.39758 * 119.56726 * 359.97438 * 6 4 3 23 23 C 1.37764 * 119.92305 * 0.02562 * 22 6 4 24 24 C 1.50702 * 119.81913 * 179.97438 * 23 22 6 25 25 H 1.08997 * 109.47074 * 270.25423 * 1 2 3 26 26 H 1.08998 * 109.47420 * 30.25496 * 1 2 3 27 27 H 1.09000 * 109.47103 * 150.25668 * 1 2 3 28 28 H 1.07994 * 119.97038 * 0.02562 * 3 2 1 29 29 H 0.96997 * 120.00369 * 186.51672 * 5 4 3 30 30 H 0.97004 * 119.99891 * 6.51390 * 5 4 3 31 31 H 1.09000 * 109.47269 * 295.25322 * 10 9 7 32 32 H 1.08997 * 109.46783 * 55.24428 * 10 9 7 33 33 H 0.96999 * 119.99820 * 185.00192 * 15 14 12 34 34 H 1.08999 * 117.49943 * 359.97438 * 20 11 10 35 35 H 1.08999 * 117.49850 * 145.02290 * 20 11 10 36 36 H 1.09003 * 117.49761 * 214.98150 * 21 11 10 37 37 H 1.08996 * 117.49998 * 359.97438 * 21 11 10 38 38 H 1.08001 * 120.03329 * 180.02562 * 22 6 4 39 39 H 1.09000 * 109.46627 * 90.00023 * 24 23 22 40 40 H 1.08998 * 109.46942 * 330.00592 * 24 23 22 41 41 H 1.08997 * 109.47253 * 209.99987 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1924 1.1977 0.0000 4 6 3.5815 1.2046 -0.0062 5 7 4.2735 2.4083 -0.0115 6 6 4.2822 -0.0125 -0.0067 7 6 5.7551 -0.0198 -0.0126 8 8 6.3674 1.0226 -0.1355 9 8 6.4237 -1.1826 0.1182 10 6 7.8700 -1.1036 0.2200 11 6 8.4400 -2.4994 0.4800 12 6 7.8500 -3.2336 1.6565 13 1 7.7121 -4.3039 1.6111 14 6 7.4863 -2.5391 2.7906 15 7 7.5943 -1.2288 2.8223 16 14 6.8402 -3.4593 4.2824 17 1 6.8153 -4.9156 3.9930 18 1 7.7262 -3.2002 5.4457 19 1 5.4651 -2.9935 4.5940 20 6 9.9230 -2.7244 0.1784 21 6 8.8551 -3.3307 -0.7355 22 6 3.5729 -1.2167 -0.0003 23 6 2.1953 -1.2027 0.0058 24 6 1.4328 -2.5026 0.0120 25 1 -0.3633 0.0046 1.0276 26 1 -0.3634 0.8877 -0.5178 27 1 -0.3633 -0.8923 -0.5098 28 1 1.6483 2.1306 0.0004 29 1 5.2383 2.4127 -0.1111 30 1 3.7920 3.2449 0.0845 31 1 8.2789 -0.7118 -0.7113 32 1 8.1406 -0.4416 1.0425 33 1 7.4079 -0.7465 3.6429 34 1 10.4925 -1.8780 -0.2056 35 1 10.4718 -3.4037 0.8306 36 1 8.7018 -4.4086 -0.6842 37 1 8.7217 -2.8833 -1.7205 38 1 4.1041 -2.1570 -0.0002 39 1 1.2536 -2.8136 1.0412 40 1 2.0143 -3.2674 -0.5026 41 1 0.4790 -2.3668 -0.4978 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327483083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:39 Heat of formation + Delta-G solvation = -39.156754 kcal Electronic energy + Delta-G solvation = -23270.769961 eV Core-core repulsion = 19923.227515 eV Total energy + Delta-G solvation = -3347.542446 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -40.04088 -38.61901 -36.74181 -35.44905 -34.45365 -32.35170 -32.14787 -30.64096 -27.85976 -26.31133 -25.59208 -25.23096 -22.36230 -21.67494 -21.20566 -19.65239 -19.13464 -17.19614 -16.65403 -16.29793 -16.04076 -15.45073 -15.26611 -14.58976 -14.40719 -14.03340 -13.97879 -13.54565 -13.42934 -13.02173 -12.69558 -12.51749 -12.22124 -12.00756 -11.83436 -11.77397 -11.48276 -11.17641 -11.04304 -10.92577 -10.73484 -10.48392 -10.33157 -10.00895 -9.87523 -9.42370 -9.30074 -8.94460 -8.75086 -8.54756 -8.21903 -7.21776 -5.98836 -4.10271 1.21617 1.84815 3.20771 3.27365 3.36455 3.39433 3.72687 4.17730 4.24283 4.37698 4.89708 4.99748 5.04326 5.23787 5.29745 5.45171 5.51522 5.55147 5.73627 5.82175 5.85291 5.91676 5.93818 6.06826 6.21899 6.24383 6.30471 6.42159 6.52173 6.58451 6.64938 6.68257 6.82163 6.89774 6.98929 7.12203 7.24782 7.47244 7.55388 7.75564 7.92123 8.25047 8.34203 8.76374 8.89423 9.52091 10.97853 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.005559 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.230147 B = 5035.970166 C = 5704.208228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.011 4.011 3 C -0.222 4.222 4 C 0.278 3.722 5 N -0.859 5.859 6 C -0.206 4.206 7 C 0.520 3.480 8 O -0.545 6.545 9 O -0.312 6.312 10 C 0.121 3.879 11 C 0.045 3.955 12 C -0.478 4.478 13 H 0.062 0.938 14 C 0.073 3.927 15 N -0.883 5.883 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.282 1.282 20 C -0.196 4.196 21 C -0.209 4.209 22 C -0.002 4.002 23 C -0.171 4.171 24 C -0.105 4.105 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.123 0.877 29 H 0.417 0.583 30 H 0.389 0.611 31 H 0.020 0.980 32 H 0.116 0.884 33 H 0.261 0.739 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.140 0.860 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.012 3.642 -5.428 13.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.012 4.012 3 C -0.244 4.244 4 C 0.167 3.833 5 N -0.407 5.407 6 C -0.212 4.212 7 C 0.368 3.632 8 O -0.439 6.439 9 O -0.226 6.226 10 C 0.048 3.952 11 C 0.045 3.955 12 C -0.515 4.515 13 H 0.080 0.920 14 C -0.129 4.129 15 N -0.521 5.521 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.208 1.208 20 C -0.234 4.234 21 C -0.246 4.246 22 C -0.021 4.021 23 C -0.173 4.173 24 C -0.161 4.161 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.140 0.860 29 H 0.260 0.740 30 H 0.216 0.784 31 H 0.038 0.962 32 H 0.134 0.866 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.158 0.842 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.797 4.022 -5.366 13.569 hybrid contribution 0.143 0.084 0.867 0.883 sum -11.654 4.106 -4.499 13.149 Atomic orbital electron populations 1.20920 0.91510 1.02759 1.02428 1.19606 0.95468 0.92136 0.93950 1.20292 0.91269 0.98055 1.14825 1.17678 0.90937 0.85764 0.88882 1.43427 1.13040 1.04350 1.79839 1.18677 0.90135 0.93126 1.19265 1.20772 0.87994 0.82449 0.71984 1.90344 1.69920 1.33502 1.50157 1.86501 1.24292 1.31092 1.80668 1.22844 0.73824 0.99239 0.99315 1.18945 0.91587 0.91665 0.93337 1.20490 1.40164 0.93393 0.97425 0.91964 1.24939 0.94395 0.94717 0.98838 1.69796 1.49317 1.06124 1.26821 0.86472 0.78692 0.80023 0.82489 1.19657 1.20987 1.20840 1.22983 0.94107 1.02280 1.03986 1.22952 1.07444 0.99260 0.94974 1.21220 0.93107 0.97487 0.90277 1.19389 0.93320 0.94798 1.09768 1.20697 0.99349 0.94183 1.01894 0.90917 0.91733 0.90882 0.85953 0.73990 0.78383 0.96195 0.86613 0.92892 0.91474 0.89812 0.90328 0.91301 0.84229 0.91855 0.91773 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.59 36.01 0.35 -0.79 16 2 C -0.01 -0.14 5.88 -104.59 -0.62 -0.76 16 3 C -0.22 -3.10 9.52 -39.42 -0.38 -3.47 16 4 C 0.28 4.69 6.76 -83.60 -0.57 4.12 16 5 N -0.86 -13.13 8.93 32.55 0.29 -12.84 16 6 C -0.21 -4.02 5.89 -104.82 -0.62 -4.64 16 7 C 0.52 11.83 7.86 34.41 0.27 12.11 16 8 O -0.54 -12.67 13.44 -19.28 -0.26 -12.93 16 9 O -0.31 -7.71 9.00 -40.68 -0.37 -8.08 16 10 C 0.12 3.04 4.38 37.16 0.16 3.20 16 11 C 0.05 1.13 2.20 -155.66 -0.34 0.79 16 12 C -0.48 -12.90 8.77 -34.44 -0.30 -13.20 16 13 H 0.06 1.67 7.82 -52.48 -0.41 1.26 16 14 C 0.07 1.99 5.33 -17.82 -0.10 1.89 16 15 N -0.88 -24.56 10.23 55.43 0.57 -24.00 16 16 Si 0.90 21.10 29.54 -169.99 -5.02 16.07 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.20 -4.36 9.96 -26.69 -0.27 -4.62 16 21 C -0.21 -4.56 9.92 -26.69 -0.26 -4.82 16 22 C 0.00 -0.04 9.25 -39.19 -0.36 -0.40 16 23 C -0.17 -2.53 5.87 -104.67 -0.61 -3.14 16 24 C -0.10 -1.23 9.59 36.01 0.35 -0.89 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.07 0.61 5.91 -51.93 -0.31 0.30 16 28 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.42 7.29 5.36 -40.92 -0.22 7.07 16 30 H 0.39 4.49 8.84 -40.82 -0.36 4.13 16 31 H 0.02 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.12 3.20 5.93 -51.93 -0.31 2.89 16 33 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 36 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.14 2.57 7.63 -52.49 -0.40 2.16 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 41 H 0.06 0.60 5.90 -51.93 -0.31 0.30 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -29.71 340.10 -8.63 -38.34 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -5.67 Total: 12.92 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -3.30 Total: -14.62 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.86 Total: -36.84 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.63 Total: -21.00 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.71 -8.63 -38.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327483083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.817 kcal (2) G-P(sol) polarization free energy of solvation -29.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds