Wall clock time and date at job start Tue Mar 31 2020 06:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37990 * 119.77932 * 2 1 4 4 C 1.38918 * 120.06418 * 180.29589 * 3 2 1 5 5 N 1.38844 * 120.17958 * 179.74955 * 4 3 2 6 6 C 1.40442 * 119.64513 * 359.72736 * 4 3 2 7 7 C 1.47288 * 120.21428 * 180.02562 * 6 4 3 8 8 O 1.21523 * 120.00308 * 353.54369 * 7 6 4 9 9 O 1.34768 * 120.00031 * 173.53950 * 7 6 4 10 10 C 1.45196 * 117.00470 * 185.17974 * 9 7 6 11 11 C 1.52996 * 109.47446 * 175.24809 * 10 9 7 12 12 C 1.50701 * 115.54726 * 306.45836 * 11 10 9 13 13 H 1.08009 * 119.99787 * 144.19589 * 12 11 10 14 14 C 1.37874 * 120.00331 * 324.19863 * 12 11 10 15 15 N 1.31512 * 120.00028 * 3.25939 * 14 12 11 16 16 Si 1.86804 * 120.00014 * 183.25961 * 14 12 11 17 17 H 1.48501 * 109.46894 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46657 * 119.99955 * 16 14 12 19 19 H 1.48496 * 109.47318 * 239.99880 * 16 14 12 20 20 C 1.53001 * 117.49959 * 160.79443 * 11 10 9 21 21 C 1.52994 * 117.49985 * 92.13091 * 11 10 9 22 22 C 1.39758 * 119.56726 * 359.97438 * 6 4 3 23 23 C 1.37764 * 119.92305 * 0.02562 * 22 6 4 24 24 C 1.50702 * 119.81913 * 179.97438 * 23 22 6 25 25 H 1.08997 * 109.47074 * 270.25423 * 1 2 3 26 26 H 1.08998 * 109.47420 * 30.25496 * 1 2 3 27 27 H 1.09000 * 109.47103 * 150.25668 * 1 2 3 28 28 H 1.07994 * 119.97038 * 0.02562 * 3 2 1 29 29 H 0.96997 * 120.00369 * 186.51672 * 5 4 3 30 30 H 0.97004 * 119.99891 * 6.51390 * 5 4 3 31 31 H 1.09000 * 109.47269 * 295.25322 * 10 9 7 32 32 H 1.08997 * 109.46783 * 55.24428 * 10 9 7 33 33 H 0.96999 * 119.99820 * 185.00192 * 15 14 12 34 34 H 1.08999 * 117.49943 * 359.97438 * 20 11 10 35 35 H 1.08999 * 117.49850 * 145.02290 * 20 11 10 36 36 H 1.09003 * 117.49761 * 214.98150 * 21 11 10 37 37 H 1.08996 * 117.49998 * 359.97438 * 21 11 10 38 38 H 1.08001 * 120.03329 * 180.02562 * 22 6 4 39 39 H 1.09000 * 109.46627 * 90.00023 * 24 23 22 40 40 H 1.08998 * 109.46942 * 330.00592 * 24 23 22 41 41 H 1.08997 * 109.47253 * 209.99987 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1924 1.1977 0.0000 4 6 3.5815 1.2046 -0.0062 5 7 4.2735 2.4083 -0.0115 6 6 4.2822 -0.0125 -0.0067 7 6 5.7551 -0.0198 -0.0126 8 8 6.3674 1.0226 -0.1355 9 8 6.4237 -1.1826 0.1182 10 6 7.8700 -1.1036 0.2200 11 6 8.4400 -2.4994 0.4800 12 6 7.8500 -3.2336 1.6565 13 1 7.7121 -4.3039 1.6111 14 6 7.4863 -2.5391 2.7906 15 7 7.5943 -1.2288 2.8223 16 14 6.8402 -3.4593 4.2824 17 1 6.8153 -4.9156 3.9930 18 1 7.7262 -3.2002 5.4457 19 1 5.4651 -2.9935 4.5940 20 6 9.9230 -2.7244 0.1784 21 6 8.8551 -3.3307 -0.7355 22 6 3.5729 -1.2167 -0.0003 23 6 2.1953 -1.2027 0.0058 24 6 1.4328 -2.5026 0.0120 25 1 -0.3633 0.0046 1.0276 26 1 -0.3634 0.8877 -0.5178 27 1 -0.3633 -0.8923 -0.5098 28 1 1.6483 2.1306 0.0004 29 1 5.2383 2.4127 -0.1111 30 1 3.7920 3.2449 0.0845 31 1 8.2789 -0.7118 -0.7113 32 1 8.1406 -0.4416 1.0425 33 1 7.4079 -0.7465 3.6429 34 1 10.4925 -1.8780 -0.2056 35 1 10.4718 -3.4037 0.8306 36 1 8.7018 -4.4086 -0.6842 37 1 8.7217 -2.8833 -1.7205 38 1 4.1041 -2.1570 -0.0002 39 1 1.2536 -2.8136 1.0412 40 1 2.0143 -3.2674 -0.5026 41 1 0.4790 -2.3668 -0.4978 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327483083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:39 Heat of formation + Delta-G solvation = -54.846729 kcal Electronic energy + Delta-G solvation = -23271.450330 eV Core-core repulsion = 19923.227515 eV Total energy + Delta-G solvation = -3348.222815 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.53467 -40.09528 -38.53219 -37.02329 -35.91960 -34.19494 -33.52242 -31.75258 -29.12129 -27.97837 -27.32420 -26.67523 -23.64152 -23.11766 -22.88120 -21.14977 -21.01183 -18.64160 -18.54069 -17.75451 -17.42525 -17.18406 -16.89018 -16.47182 -15.71889 -15.45219 -15.16970 -14.98620 -14.73156 -14.56274 -13.95594 -13.72280 -13.56275 -13.49491 -13.28618 -13.10544 -12.96055 -12.87828 -12.68388 -12.33474 -12.22284 -12.14340 -12.01961 -11.70362 -11.27419 -11.17366 -11.09430 -10.88698 -10.69667 -10.17062 -9.75076 -8.44459 -8.02263 -6.20002 -0.10471 0.63180 1.38780 1.42045 1.52584 1.65430 2.09533 2.41293 2.87804 2.99117 3.04755 3.55956 3.79357 3.94050 4.01927 4.22370 4.31289 4.32229 4.39819 4.51012 4.61602 4.74334 4.76713 4.83625 4.88333 4.89604 4.98572 5.00798 5.03457 5.16423 5.22206 5.28178 5.32719 5.43371 5.44080 5.50462 5.72491 5.80749 5.83450 6.02233 6.31685 6.51436 6.78014 6.97133 7.06533 7.43895 8.91907 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.005559 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.230147 B = 5035.970166 C = 5704.208228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.001 4.001 3 C -0.215 4.215 4 C 0.268 3.732 5 N -0.856 5.856 6 C -0.245 4.245 7 C 0.508 3.492 8 O -0.563 6.563 9 O -0.328 6.328 10 C 0.130 3.870 11 C 0.004 3.996 12 C -0.491 4.491 13 H 0.057 0.943 14 C 0.029 3.971 15 N -0.905 5.905 16 Si 0.952 3.048 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.286 1.286 20 C -0.184 4.184 21 C -0.188 4.188 22 C -0.023 4.023 23 C -0.172 4.172 24 C -0.104 4.104 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.158 0.842 29 H 0.408 0.592 30 H 0.407 0.593 31 H 0.024 0.976 32 H 0.086 0.914 33 H 0.256 0.744 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.761 3.528 -5.706 16.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.002 4.002 3 C -0.238 4.238 4 C 0.157 3.843 5 N -0.403 5.403 6 C -0.252 4.252 7 C 0.358 3.642 8 O -0.458 6.458 9 O -0.242 6.242 10 C 0.057 3.943 11 C 0.004 3.996 12 C -0.529 4.529 13 H 0.075 0.925 14 C -0.171 4.171 15 N -0.544 5.544 16 Si 0.778 3.222 17 H -0.188 1.188 18 H -0.205 1.205 19 H -0.212 1.212 20 C -0.222 4.222 21 C -0.225 4.225 22 C -0.042 4.042 23 C -0.174 4.174 24 C -0.161 4.161 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.176 0.824 29 H 0.247 0.753 30 H 0.237 0.763 31 H 0.042 0.958 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.137 0.863 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.563 3.912 -5.651 16.103 hybrid contribution 0.910 0.161 0.897 1.287 sum -13.653 4.073 -4.754 15.020 Atomic orbital electron populations 1.21036 0.87921 1.04636 1.03825 1.20147 0.97909 0.91084 0.91071 1.20720 0.89901 0.99988 1.13148 1.17940 0.92200 0.85173 0.89021 1.43356 1.12585 1.04957 1.79357 1.18733 0.88215 0.95148 1.23056 1.21497 0.89483 0.81739 0.71471 1.90316 1.70677 1.33648 1.51192 1.86501 1.23950 1.32491 1.81285 1.22577 0.74621 0.98970 0.98172 1.19089 0.93597 0.92199 0.94758 1.20708 1.40459 0.93255 0.98446 0.92515 1.25620 0.94793 0.95382 1.01262 1.69976 1.50316 1.07185 1.26902 0.85584 0.77786 0.79257 0.79544 1.18789 1.20506 1.21171 1.22993 0.92891 1.02643 1.03704 1.22966 1.05595 0.99342 0.94615 1.21175 0.94668 0.96178 0.92200 1.19762 0.92165 0.97051 1.08406 1.20772 1.00228 0.92468 1.02594 0.89465 0.89637 0.89351 0.82429 0.75256 0.76272 0.95751 0.89616 0.93437 0.90046 0.89585 0.89558 0.89714 0.86289 0.91368 0.92135 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 9.59 71.24 0.68 -0.96 16 2 C 0.00 -0.02 5.88 -19.84 -0.12 -0.14 16 3 C -0.22 -5.43 9.52 22.37 0.21 -5.22 16 4 C 0.27 8.93 6.76 38.73 0.26 9.20 16 5 N -0.86 -26.03 8.93 -50.93 -0.45 -26.48 16 6 C -0.25 -9.92 5.89 -19.99 -0.12 -10.04 16 7 C 0.51 24.42 7.86 70.20 0.55 24.98 16 8 O -0.56 -27.61 13.44 19.76 0.27 -27.34 16 9 O -0.33 -17.11 9.00 -56.79 -0.51 -17.62 16 10 C 0.13 6.83 4.38 71.98 0.32 7.14 16 11 C 0.00 0.20 2.20 -52.93 -0.12 0.09 16 12 C -0.49 -27.11 8.77 25.60 0.22 -26.88 16 13 H 0.06 3.10 7.82 -2.91 -0.02 3.07 16 14 C 0.03 1.60 5.33 84.65 0.45 2.05 16 15 N -0.91 -52.26 10.23 21.45 0.22 -52.04 16 16 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 17 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 20 C -0.18 -8.15 9.96 30.62 0.30 -7.84 16 21 C -0.19 -8.08 9.92 30.62 0.30 -7.78 16 22 C -0.02 -0.86 9.25 22.53 0.21 -0.65 16 23 C -0.17 -4.84 5.87 -19.89 -0.12 -4.96 16 24 C -0.10 -2.22 9.59 71.24 0.68 -1.54 16 25 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 27 H 0.09 1.01 5.91 -2.39 -0.01 0.99 16 28 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 29 H 0.41 14.66 5.36 -94.22 -0.50 14.15 16 30 H 0.41 8.90 8.84 -92.71 -0.82 8.08 16 31 H 0.02 1.21 8.08 -2.39 -0.02 1.19 16 32 H 0.09 5.00 5.93 -2.39 -0.01 4.99 16 33 H 0.26 14.37 8.32 -92.71 -0.77 13.60 16 34 H 0.08 3.32 8.14 -2.39 -0.02 3.31 16 35 H 0.09 3.72 8.14 -2.39 -0.02 3.70 16 36 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 37 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 38 H 0.12 4.70 7.63 -2.91 -0.02 4.68 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 41 H 0.09 1.41 5.90 -2.39 -0.01 1.39 16 Total: -1.00 -67.00 340.10 5.02 -61.98 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: -0.26 Total: 38.00 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 3.73 Total: -22.57 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -0.24 Total: -78.52 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -0.25 Total: -44.96 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -67.00 5.02 -61.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327483083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.137 kcal (2) G-P(sol) polarization free energy of solvation -67.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds