Wall clock time and date at job start Tue Mar 31 2020 05:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 112.85251 * 2 1 4 4 O 1.21279 * 120.00409 * 131.19306 * 3 2 1 5 5 N 1.34783 * 119.99641 * 311.19504 * 3 2 1 6 6 C 1.46501 * 119.99665 * 180.02562 * 5 3 2 7 7 C 1.50699 * 109.46837 * 180.02562 * 6 5 3 8 8 C 1.38330 * 119.96575 * 269.72277 * 7 6 5 9 9 C 1.38274 * 120.13798 * 179.76725 * 8 7 6 10 10 C 1.38122 * 120.07269 * 0.50588 * 9 8 7 11 11 C 1.38860 * 119.92704 * 359.75289 * 10 9 8 12 12 O 1.35750 * 120.06903 * 179.97438 * 11 10 9 13 13 C 1.34830 * 116.99719 * 354.48290 * 12 11 10 14 14 H 1.07993 * 120.00412 * 5.05793 * 13 12 11 15 15 C 1.38662 * 119.99927 * 185.06013 * 13 12 11 16 16 N 1.31561 * 119.99720 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00035 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46988 * 89.99906 * 17 15 13 19 19 H 1.48502 * 109.46863 * 209.99786 * 17 15 13 20 20 H 1.48497 * 109.47172 * 329.99882 * 17 15 13 21 21 C 1.38076 * 119.96694 * 89.99717 * 7 6 5 22 22 C 1.53784 * 113.61509 * 131.19454 * 2 1 3 23 23 C 1.53786 * 87.08316 * 89.11270 * 22 2 1 24 24 C 1.53789 * 87.16827 * 25.39150 * 23 22 2 25 25 H 1.09007 * 109.46920 * 288.80586 * 1 2 3 26 26 H 1.08996 * 109.47705 * 48.80331 * 1 2 3 27 27 H 1.09007 * 109.47348 * 168.80765 * 1 2 3 28 28 H 0.97002 * 119.99956 * 0.02562 * 5 3 2 29 29 H 1.08993 * 109.46953 * 299.99726 * 6 5 3 30 30 H 1.08996 * 109.47454 * 60.00145 * 6 5 3 31 31 H 1.08002 * 119.92640 * 0.02562 * 8 7 6 32 32 H 1.08004 * 119.96481 * 180.25935 * 9 8 7 33 33 H 1.08002 * 120.03766 * 179.76406 * 10 9 8 34 34 H 0.96994 * 120.00004 * 180.02562 * 16 15 13 35 35 H 1.08000 * 120.03596 * 359.95723 * 21 7 6 36 36 H 1.09009 * 113.61416 * 334.56952 * 22 2 1 37 37 H 1.08994 * 113.61937 * 203.66388 * 22 2 1 38 38 H 1.08999 * 113.61281 * 139.98228 * 23 22 2 39 39 H 1.08998 * 113.61153 * 270.80441 * 23 22 2 40 40 H 1.09000 * 113.61055 * 89.15833 * 24 23 22 41 41 H 1.08993 * 113.61051 * 220.05767 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9881 1.6789 0.7903 5 7 1.6684 2.3082 -0.8784 6 6 2.2378 3.6580 -0.8787 7 6 1.5699 4.4845 -1.9474 8 6 2.0974 4.5176 -3.2258 9 6 1.4848 5.2709 -4.2102 10 6 0.3497 6.0013 -3.9172 11 6 -0.1791 5.9745 -2.6335 12 8 -1.2943 6.6916 -2.3421 13 6 -1.7739 7.4979 -3.3106 14 1 -1.3229 7.4906 -4.2918 15 6 -2.8462 8.3365 -3.0466 16 7 -3.3959 8.3450 -1.8514 17 14 -3.5110 9.4530 -4.3885 18 1 -4.5735 8.7412 -5.1433 19 1 -4.0776 10.6810 -3.7750 20 1 -2.4106 9.8244 -5.3138 21 6 0.4355 5.2125 -1.6480 22 6 2.1460 -0.9280 1.0603 23 6 2.0928 -2.0426 0.0021 24 6 2.1447 -0.9318 -1.0602 25 1 -0.3633 0.3313 0.9729 26 1 -0.3634 0.6768 -0.7732 27 1 -0.3634 -1.0082 -0.1995 28 1 0.9699 2.0762 -1.5102 29 1 2.0740 4.1217 0.0940 30 1 3.3077 3.6011 -1.0786 31 1 2.9871 3.9505 -3.4564 32 1 1.8965 5.2914 -5.2085 33 1 -0.1262 6.5925 -4.6856 34 1 -4.1462 8.9313 -1.6668 35 1 0.0263 5.1893 -0.6488 36 1 1.4944 -1.1068 1.9157 37 1 3.1590 -0.6486 1.3496 38 1 2.9716 -2.6876 0.0027 39 1 1.1573 -2.6019 0.0036 40 1 3.1575 -0.6534 -1.3516 41 1 1.4923 -1.1136 -1.9141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331106687.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:29 Heat of formation + Delta-G solvation = -29.825193 kcal Electronic energy + Delta-G solvation = -22148.598161 eV Core-core repulsion = 18801.460361 eV Total energy + Delta-G solvation = -3347.137800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.64031 -39.18802 -37.86944 -36.72441 -34.50986 -32.35608 -31.09533 -29.69814 -29.04903 -26.29437 -25.82024 -25.30008 -24.34811 -21.74162 -21.08851 -20.76990 -18.85847 -17.81637 -17.31324 -16.83030 -15.97582 -15.52322 -15.25350 -14.96323 -14.66866 -14.41618 -14.16816 -13.76630 -13.63224 -13.47703 -12.87943 -12.76245 -12.54337 -12.48280 -12.41320 -12.09850 -11.69263 -11.50453 -11.39719 -11.30564 -10.95050 -10.84703 -10.73051 -10.70516 -10.50809 -10.47502 -9.60997 -9.42606 -8.95918 -8.90660 -8.25429 -7.34870 -6.50907 -4.10525 1.89045 2.24966 2.67050 3.08200 3.09900 3.14715 3.40837 3.91022 4.24876 4.31762 4.46369 4.56418 4.57267 4.85763 4.95845 5.05283 5.21882 5.27035 5.35747 5.45646 5.51970 5.58566 5.60120 5.65474 5.73085 5.81429 5.82213 5.83714 5.93057 6.02511 6.05942 6.21216 6.23625 6.51477 6.53989 6.79787 6.97607 7.17057 7.25337 7.33673 7.60553 7.70063 7.93212 8.29516 8.94421 9.62946 10.66853 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026324 B = 0.003040 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.394001 B = 9208.215670 C = 9605.834491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.111 4.111 3 C 0.526 3.474 4 O -0.546 6.546 5 N -0.718 5.718 6 C 0.166 3.834 7 C -0.072 4.072 8 C -0.195 4.195 9 C -0.076 4.076 10 C -0.226 4.226 11 C 0.151 3.849 12 O -0.176 6.176 13 C -0.394 4.394 14 H 0.092 0.908 15 C 0.040 3.960 16 N -0.861 5.861 17 Si 0.941 3.059 18 H -0.273 1.273 19 H -0.277 1.277 20 H -0.267 1.267 21 C -0.171 4.171 22 C -0.114 4.114 23 C -0.141 4.141 24 C -0.121 4.121 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.403 0.597 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.271 0.729 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.810 -15.983 -0.415 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.114 4.114 3 C 0.312 3.688 4 O -0.424 6.424 5 N -0.369 5.369 6 C 0.044 3.956 7 C -0.073 4.073 8 C -0.215 4.215 9 C -0.094 4.094 10 C -0.246 4.246 11 C 0.097 3.903 12 O -0.079 6.079 13 C -0.470 4.470 14 H 0.110 0.890 15 C -0.165 4.165 16 N -0.495 5.495 17 Si 0.766 3.234 18 H -0.198 1.198 19 H -0.202 1.202 20 H -0.192 1.192 21 C -0.191 4.191 22 C -0.152 4.152 23 C -0.178 4.178 24 C -0.159 4.159 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.238 0.762 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.145 0.855 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.098 -15.600 0.490 17.584 hybrid contribution -0.711 0.665 -1.128 1.490 sum 7.387 -14.935 -0.638 16.674 Atomic orbital electron populations 1.21618 0.91203 1.02826 1.03004 1.22188 0.97156 0.91574 1.00468 1.20397 0.82221 0.86157 0.80040 1.90667 1.31702 1.80552 1.39474 1.46164 1.41454 1.11806 1.37436 1.20155 0.96945 0.80787 0.97748 1.19274 0.95670 0.98210 0.94161 1.20475 1.02374 1.05485 0.93158 1.20743 0.94896 0.95691 0.98073 1.21242 0.99912 1.05955 0.97454 1.19321 0.87075 0.91467 0.92450 1.83982 1.33877 1.49507 1.40584 1.21325 1.15268 1.18359 0.92026 0.89035 1.25301 0.96077 0.97343 0.97735 1.70035 1.22331 1.37004 1.20173 0.85708 0.79265 0.79046 0.79398 1.19842 1.20199 1.19173 1.20086 0.97679 1.02561 0.98791 1.22873 1.02225 0.94057 0.96030 1.22828 1.02293 0.96321 0.96372 1.22946 1.01379 0.95181 0.96378 0.91576 0.91649 0.91310 0.76236 0.90919 0.91053 0.87543 0.87287 0.85457 0.91934 0.86418 0.91035 0.88795 0.91141 0.89915 0.89755 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 8.99 37.15 0.33 -0.82 16 2 C -0.11 -1.14 1.26 -154.76 -0.19 -1.33 16 3 C 0.53 7.24 6.94 -10.98 -0.08 7.17 16 4 O -0.55 -9.45 15.90 5.56 0.09 -9.36 16 5 N -0.72 -9.56 5.43 -61.48 -0.33 -9.89 16 6 C 0.17 2.48 5.80 -5.19 -0.03 2.45 16 7 C -0.07 -1.23 5.25 -104.65 -0.55 -1.77 16 8 C -0.20 -3.19 9.70 -39.53 -0.38 -3.57 16 9 C -0.08 -1.32 10.04 -39.61 -0.40 -1.71 16 10 C -0.23 -4.70 9.17 -39.39 -0.36 -5.06 16 11 C 0.15 3.50 6.65 -39.10 -0.26 3.24 16 12 O -0.18 -4.89 9.76 0.05 0.00 -4.89 16 13 C -0.39 -10.74 9.49 30.89 0.29 -10.44 16 14 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 15 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 16 N -0.86 -24.84 13.67 55.48 0.76 -24.08 16 17 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 C -0.17 -3.46 9.65 -39.39 -0.38 -3.84 16 22 C -0.11 -1.11 7.00 -25.91 -0.18 -1.29 16 23 C -0.14 -1.07 7.73 -25.91 -0.20 -1.27 16 24 C -0.12 -1.04 7.21 -25.82 -0.19 -1.23 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.58 7.00 -51.93 -0.36 0.22 16 27 H 0.07 0.49 7.34 -51.93 -0.38 0.11 16 28 H 0.40 4.83 7.35 -40.82 -0.30 4.53 16 29 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 30 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 31 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 36 H 0.07 0.64 8.10 -51.92 -0.42 0.22 16 37 H 0.09 1.06 7.43 -51.93 -0.39 0.67 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.53 7.66 -51.93 -0.40 0.14 16 40 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 41 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -31.10 342.83 -7.76 -38.86 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.75 Total: 7.62 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -2.67 Total: -18.49 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.42 Total: -33.97 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.09 Total: -14.25 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.10 -7.76 -38.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331106687.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.036 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds