Wall clock time and date at job start Tue Mar 31 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 112.85251 * 2 1 4 4 O 1.21279 * 120.00409 * 131.19306 * 3 2 1 5 5 N 1.34783 * 119.99641 * 311.19504 * 3 2 1 6 6 C 1.46501 * 119.99665 * 180.02562 * 5 3 2 7 7 C 1.50699 * 109.46837 * 180.02562 * 6 5 3 8 8 C 1.38330 * 119.96575 * 269.72277 * 7 6 5 9 9 C 1.38274 * 120.13798 * 179.76725 * 8 7 6 10 10 C 1.38122 * 120.07269 * 0.50588 * 9 8 7 11 11 C 1.38860 * 119.92704 * 359.75289 * 10 9 8 12 12 O 1.35750 * 120.06903 * 179.97438 * 11 10 9 13 13 C 1.34830 * 116.99719 * 354.48290 * 12 11 10 14 14 H 1.07993 * 120.00412 * 5.05793 * 13 12 11 15 15 C 1.38662 * 119.99927 * 185.06013 * 13 12 11 16 16 N 1.31561 * 119.99720 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00035 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46988 * 89.99906 * 17 15 13 19 19 H 1.48502 * 109.46863 * 209.99786 * 17 15 13 20 20 H 1.48497 * 109.47172 * 329.99882 * 17 15 13 21 21 C 1.38076 * 119.96694 * 89.99717 * 7 6 5 22 22 C 1.53784 * 113.61509 * 131.19454 * 2 1 3 23 23 C 1.53786 * 87.08316 * 89.11270 * 22 2 1 24 24 C 1.53789 * 87.16827 * 25.39150 * 23 22 2 25 25 H 1.09007 * 109.46920 * 288.80586 * 1 2 3 26 26 H 1.08996 * 109.47705 * 48.80331 * 1 2 3 27 27 H 1.09007 * 109.47348 * 168.80765 * 1 2 3 28 28 H 0.97002 * 119.99956 * 0.02562 * 5 3 2 29 29 H 1.08993 * 109.46953 * 299.99726 * 6 5 3 30 30 H 1.08996 * 109.47454 * 60.00145 * 6 5 3 31 31 H 1.08002 * 119.92640 * 0.02562 * 8 7 6 32 32 H 1.08004 * 119.96481 * 180.25935 * 9 8 7 33 33 H 1.08002 * 120.03766 * 179.76406 * 10 9 8 34 34 H 0.96994 * 120.00004 * 180.02562 * 16 15 13 35 35 H 1.08000 * 120.03596 * 359.95723 * 21 7 6 36 36 H 1.09009 * 113.61416 * 334.56952 * 22 2 1 37 37 H 1.08994 * 113.61937 * 203.66388 * 22 2 1 38 38 H 1.08999 * 113.61281 * 139.98228 * 23 22 2 39 39 H 1.08998 * 113.61153 * 270.80441 * 23 22 2 40 40 H 1.09000 * 113.61055 * 89.15833 * 24 23 22 41 41 H 1.08993 * 113.61051 * 220.05767 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9881 1.6789 0.7903 5 7 1.6684 2.3082 -0.8784 6 6 2.2378 3.6580 -0.8787 7 6 1.5699 4.4845 -1.9474 8 6 2.0974 4.5176 -3.2258 9 6 1.4848 5.2709 -4.2102 10 6 0.3497 6.0013 -3.9172 11 6 -0.1791 5.9745 -2.6335 12 8 -1.2943 6.6916 -2.3421 13 6 -1.7739 7.4979 -3.3106 14 1 -1.3229 7.4906 -4.2918 15 6 -2.8462 8.3365 -3.0466 16 7 -3.3959 8.3450 -1.8514 17 14 -3.5110 9.4530 -4.3885 18 1 -4.5735 8.7412 -5.1433 19 1 -4.0776 10.6810 -3.7750 20 1 -2.4106 9.8244 -5.3138 21 6 0.4355 5.2125 -1.6480 22 6 2.1460 -0.9280 1.0603 23 6 2.0928 -2.0426 0.0021 24 6 2.1447 -0.9318 -1.0602 25 1 -0.3633 0.3313 0.9729 26 1 -0.3634 0.6768 -0.7732 27 1 -0.3634 -1.0082 -0.1995 28 1 0.9699 2.0762 -1.5102 29 1 2.0740 4.1217 0.0940 30 1 3.3077 3.6011 -1.0786 31 1 2.9871 3.9505 -3.4564 32 1 1.8965 5.2914 -5.2085 33 1 -0.1262 6.5925 -4.6856 34 1 -4.1462 8.9313 -1.6668 35 1 0.0263 5.1893 -0.6488 36 1 1.4944 -1.1068 1.9157 37 1 3.1590 -0.6486 1.3496 38 1 2.9716 -2.6876 0.0027 39 1 1.1573 -2.6019 0.0036 40 1 3.1575 -0.6534 -1.3516 41 1 1.4923 -1.1136 -1.9141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331106687.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:28 Heat of formation + Delta-G solvation = -49.034036 kcal Electronic energy + Delta-G solvation = -22149.431119 eV Core-core repulsion = 18801.460361 eV Total energy + Delta-G solvation = -3347.970757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.61812 -40.81081 -38.99335 -38.25937 -35.80933 -34.29487 -32.42841 -30.93248 -30.31049 -27.68679 -27.03349 -26.54431 -25.31897 -23.28317 -22.52265 -21.91886 -19.98944 -19.35494 -18.80177 -18.04116 -17.16222 -16.83333 -16.61111 -16.14674 -16.13088 -15.84301 -15.54830 -15.26015 -14.99105 -14.48832 -14.33212 -13.99804 -13.76373 -13.64865 -13.38562 -13.23083 -13.12080 -13.01725 -12.54263 -12.41284 -12.29186 -12.21052 -12.12206 -12.11134 -11.40934 -11.23462 -11.19613 -10.83162 -10.66491 -10.14510 -9.76061 -9.04836 -8.47696 -6.16417 0.36890 0.68915 1.35606 1.44379 1.52970 1.58686 2.16948 2.26493 2.84888 3.14554 3.38252 3.46856 3.57378 3.75092 3.83795 3.90123 4.02735 4.08625 4.28565 4.38835 4.51039 4.56633 4.63947 4.69822 4.72586 4.74667 4.87755 4.92670 4.99834 5.06252 5.09344 5.10924 5.17719 5.23749 5.29943 5.36156 5.53953 5.60739 5.68969 5.70136 6.00768 6.14779 6.52625 6.97067 7.19968 7.77034 8.75421 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026324 B = 0.003040 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.394001 B = 9208.215670 C = 9605.834491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.113 4.113 3 C 0.522 3.478 4 O -0.586 6.586 5 N -0.712 5.712 6 C 0.172 3.828 7 C -0.059 4.059 8 C -0.169 4.169 9 C -0.068 4.068 10 C -0.234 4.234 11 C 0.114 3.886 12 O -0.232 6.232 13 C -0.413 4.413 14 H 0.104 0.896 15 C -0.023 4.023 16 N -0.921 5.921 17 Si 1.018 2.982 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.252 1.252 21 C -0.182 4.182 22 C -0.122 4.122 23 C -0.127 4.127 24 C -0.117 4.117 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.411 0.589 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.122 0.878 34 H 0.272 0.728 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.324 -18.036 -2.789 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.116 4.116 3 C 0.310 3.690 4 O -0.466 6.466 5 N -0.363 5.363 6 C 0.048 3.952 7 C -0.059 4.059 8 C -0.188 4.188 9 C -0.086 4.086 10 C -0.254 4.254 11 C 0.063 3.937 12 O -0.139 6.139 13 C -0.489 4.489 14 H 0.121 0.879 15 C -0.220 4.220 16 N -0.559 5.559 17 Si 0.837 3.163 18 H -0.187 1.187 19 H -0.198 1.198 20 H -0.176 1.176 21 C -0.202 4.202 22 C -0.160 4.160 23 C -0.164 4.164 24 C -0.154 4.154 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.247 0.753 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.139 0.861 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.650 -17.700 -1.913 20.250 hybrid contribution -0.884 1.086 -0.349 1.443 sum 8.766 -16.614 -2.262 18.920 Atomic orbital electron populations 1.21642 0.90021 1.04289 1.02537 1.22322 0.97945 0.89345 1.01958 1.21090 0.81534 0.87327 0.79014 1.90649 1.33590 1.81443 1.40927 1.46088 1.41494 1.11053 1.37655 1.20033 0.97418 0.81307 0.96398 1.19434 0.94077 0.97104 0.95296 1.20985 1.02410 1.03457 0.91938 1.21163 0.93173 0.94015 1.00236 1.21382 1.01134 1.06613 0.96230 1.19837 0.87182 0.92249 0.94389 1.83949 1.36527 1.51676 1.41725 1.21832 1.15744 1.18701 0.92637 0.87862 1.26591 0.96177 0.98862 1.00404 1.70186 1.23755 1.39056 1.22918 0.84591 0.78886 0.76593 0.76191 1.18710 1.19835 1.17554 1.20205 0.98875 1.03149 0.97999 1.22896 1.01101 0.95164 0.96812 1.22813 1.03703 0.95641 0.94245 1.22961 1.01110 0.94609 0.96743 0.92452 0.91782 0.88879 0.75275 0.92226 0.89704 0.83489 0.83236 0.86060 0.91866 0.87621 0.90589 0.90861 0.90244 0.88041 0.90526 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.99 71.98 0.65 -1.38 16 2 C -0.11 -2.13 1.26 -52.34 -0.07 -2.19 16 3 C 0.52 13.89 6.94 87.65 0.61 14.50 16 4 O -0.59 -20.18 15.90 -3.03 -0.05 -20.23 16 5 N -0.71 -17.88 5.43 -466.80 -2.53 -20.42 16 6 C 0.17 4.87 5.80 85.63 0.50 5.37 16 7 C -0.06 -1.88 5.25 -19.88 -0.10 -1.98 16 8 C -0.17 -4.80 9.70 22.30 0.22 -4.59 16 9 C -0.07 -2.12 10.04 22.25 0.22 -1.89 16 10 C -0.23 -9.58 9.17 22.39 0.21 -9.37 16 11 C 0.11 5.45 6.65 22.58 0.15 5.60 16 12 O -0.23 -13.69 9.76 -22.75 -0.22 -13.91 16 13 C -0.41 -23.52 9.49 67.92 0.64 -22.88 16 14 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 15 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 16 N -0.92 -56.07 13.67 21.62 0.30 -55.77 16 17 Si 1.02 42.03 29.55 68.60 2.03 44.06 16 18 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 19 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 20 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 21 C -0.18 -7.52 9.65 22.39 0.22 -7.30 16 22 C -0.12 -2.20 7.00 31.12 0.22 -1.99 16 23 C -0.13 -1.55 7.73 31.13 0.24 -1.31 16 24 C -0.12 -1.67 7.21 31.18 0.22 -1.44 16 25 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.06 1.03 7.00 -2.39 -0.02 1.01 16 27 H 0.09 1.04 7.34 -2.38 -0.02 1.02 16 28 H 0.41 9.06 7.35 -92.71 -0.68 8.38 16 29 H 0.06 1.87 8.08 -2.39 -0.02 1.85 16 30 H 0.08 2.23 8.08 -2.39 -0.02 2.22 16 31 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 32 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 33 H 0.12 5.04 5.64 -2.91 -0.02 5.03 16 34 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 36 H 0.08 1.27 8.10 -2.38 -0.02 1.25 16 37 H 0.07 1.64 7.43 -2.39 -0.02 1.62 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 0.90 7.66 -2.39 -0.02 0.88 16 40 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 41 H 0.09 1.04 8.10 -2.39 -0.02 1.02 16 Total: -1.00 -72.72 342.83 4.27 -68.45 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.36 Total: 29.50 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 4.39 Total: -31.67 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -2.24 Total: -76.19 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.27 Total: -34.14 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -72.72 4.27 -68.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331106687.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.416 kcal (2) G-P(sol) polarization free energy of solvation -72.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds