Wall clock time and date at job start Tue Mar 31 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 120.00440 * 2 1 4 4 C 1.38230 * 120.00176 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.99658 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00383 * 359.97438 * 4 3 2 7 7 C 1.38235 * 119.99572 * 359.95968 * 6 4 3 8 8 C 1.50705 * 119.99834 * 179.97438 * 7 6 4 9 9 C 1.50707 * 109.46846 * 89.99992 * 8 7 6 10 10 O 1.21279 * 119.99658 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00011 * 179.97438 * 9 8 7 12 12 C 1.47584 * 134.49657 * 179.97438 * 11 9 8 13 13 C 1.53946 * 86.12025 * 155.36378 * 12 11 9 14 14 O 1.42897 * 113.74068 * 269.15867 * 13 12 11 15 15 C 1.50700 * 113.74246 * 137.95222 * 13 12 11 16 16 H 1.07998 * 119.99659 * 4.91778 * 15 13 12 17 17 C 1.37870 * 120.00275 * 184.91298 * 15 13 12 18 18 N 1.31521 * 119.99939 * 13.83955 * 17 15 13 19 19 Si 1.86793 * 120.00241 * 193.83635 * 17 15 13 20 20 H 1.48503 * 109.47305 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47166 * 299.99995 * 19 17 15 22 22 H 1.48499 * 109.46987 * 59.99962 * 19 17 15 23 23 C 1.47585 * 134.49296 * 0.02562 * 11 9 8 24 24 C 1.38230 * 120.00303 * 0.27409 * 7 6 4 25 25 H 1.08995 * 109.47599 * 89.99878 * 1 2 3 26 26 H 1.09005 * 109.47017 * 210.00177 * 1 2 3 27 27 H 1.09004 * 109.46734 * 329.99330 * 1 2 3 28 28 H 1.08001 * 119.99393 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47119 * 270.01886 * 5 4 3 30 30 H 1.08992 * 109.47361 * 30.02091 * 5 4 3 31 31 H 1.09004 * 109.47319 * 150.02081 * 5 4 3 32 32 H 1.07992 * 120.00529 * 179.97438 * 6 4 3 33 33 H 1.08992 * 109.47417 * 330.00463 * 8 7 6 34 34 H 1.08994 * 109.47515 * 209.99825 * 8 7 6 35 35 H 1.09003 * 113.76727 * 41.05948 * 12 11 9 36 36 H 1.09000 * 113.76915 * 269.66851 * 12 11 9 37 37 H 0.96698 * 114.00098 * 171.44601 * 14 13 12 38 38 H 0.97007 * 119.99483 * 5.87247 * 18 17 15 39 39 H 1.08994 * 113.77423 * 90.33340 * 23 11 9 40 40 H 1.09010 * 113.76672 * 318.93187 * 23 11 9 41 41 H 1.08006 * 120.00006 * 179.72473 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.3340 2.5022 -0.0011 6 6 4.2717 -0.0001 -0.0005 7 6 3.5805 -1.1972 0.0008 8 6 4.3340 -2.5023 0.0003 9 6 4.5871 -2.9368 1.4210 10 8 4.1939 -2.2541 2.3430 11 7 5.2495 -4.0845 1.6668 12 6 5.6637 -4.7980 2.8905 13 6 5.6567 -6.0711 2.0250 14 8 4.4044 -6.7592 2.0238 15 6 6.8285 -6.9840 2.2791 16 1 7.5296 -6.7557 3.0683 17 6 7.0055 -8.1106 1.5044 18 7 6.3293 -8.2519 0.3851 19 14 8.2056 -9.4363 2.0441 20 1 8.2122 -10.5347 1.0447 21 1 9.5686 -8.8566 2.1507 22 1 7.7905 -9.9714 3.3657 23 6 5.8528 -5.1322 0.8203 24 6 2.1982 -1.1972 -0.0035 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5140 28 1 1.6582 2.1324 0.0004 29 1 4.5150 2.8167 -1.0289 30 1 3.7454 3.2618 0.5131 31 1 5.2869 2.3719 0.5121 32 1 5.3517 -0.0001 -0.0014 33 1 5.2857 -2.3723 -0.5148 34 1 3.7443 -3.2622 -0.5124 35 1 4.9085 -4.7970 3.6765 36 1 6.6535 -4.5163 3.2496 37 1 4.3533 -7.4820 1.3836 38 1 5.7711 -7.5277 0.0611 39 1 6.8981 -4.9486 0.5720 40 1 5.2485 -5.3982 -0.0471 41 1 1.6582 -2.1325 -0.0069 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331166753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:20 Heat of formation + Delta-G solvation = -42.640491 kcal Electronic energy + Delta-G solvation = -22515.107367 eV Core-core repulsion = 19167.413855 eV Total energy + Delta-G solvation = -3347.693513 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.01589 -39.27645 -37.49272 -34.29457 -33.52708 -33.37562 -32.40944 -29.47446 -27.75654 -26.80366 -26.68808 -25.52664 -24.67753 -21.25493 -20.73398 -20.06223 -18.45933 -17.88128 -16.45793 -16.30093 -15.90375 -15.42062 -15.01930 -14.67855 -14.19210 -14.08309 -13.91922 -13.77682 -13.30179 -13.09048 -12.95304 -12.81369 -12.61315 -12.46813 -12.31408 -12.05457 -11.68009 -11.55309 -11.40287 -11.15529 -10.97787 -10.95041 -10.93792 -10.57397 -10.23683 -9.53655 -9.35141 -8.85836 -8.57070 -8.48775 -8.39761 -7.90089 -6.71112 -4.50415 1.39992 1.43493 3.11731 3.29054 3.32894 3.39614 3.51269 3.83472 4.30557 4.69182 4.75763 4.77062 4.78140 5.01798 5.14957 5.25921 5.28135 5.31952 5.36802 5.47140 5.53231 5.57473 5.59571 5.64852 5.68264 5.77176 5.79971 6.05058 6.12504 6.15749 6.21203 6.32746 6.37326 6.48344 6.57816 6.58809 6.69907 6.76507 7.08512 7.63364 8.06884 8.34255 8.42609 8.66883 8.81889 9.19912 10.60440 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032137 B = 0.003245 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.056099 B = 8627.460927 C = 8947.342199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.085 4.085 5 C -0.111 4.111 6 C -0.112 4.112 7 C -0.048 4.048 8 C -0.098 4.098 9 C 0.531 3.469 10 O -0.553 6.553 11 N -0.635 5.635 12 C 0.123 3.877 13 C 0.216 3.784 14 O -0.566 6.566 15 C -0.618 4.618 16 H 0.065 0.935 17 C 0.037 3.963 18 N -0.898 5.898 19 Si 1.067 2.933 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.069 3.931 24 C -0.110 4.110 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.375 0.625 38 H 0.268 0.732 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.971 14.301 -4.816 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.085 4.085 5 C -0.168 4.168 6 C -0.130 4.130 7 C -0.049 4.049 8 C -0.138 4.138 9 C 0.320 3.680 10 O -0.432 6.432 11 N -0.369 5.369 12 C 0.001 3.999 13 C 0.175 3.825 14 O -0.373 6.373 15 C -0.656 4.656 16 H 0.083 0.917 17 C -0.169 4.169 18 N -0.534 5.534 19 Si 0.893 3.107 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.054 4.054 24 C -0.129 4.129 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.224 0.776 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.862 13.788 -4.291 15.237 hybrid contribution -0.311 1.100 -0.120 1.149 sum -5.174 14.887 -4.411 16.366 Atomic orbital electron populations 1.20767 0.91314 1.02736 1.02059 1.19820 0.95895 0.93017 0.99706 1.20810 0.93445 0.97279 1.02815 1.19805 0.93821 0.95068 0.99846 1.20759 0.99941 0.94087 1.02028 1.20816 0.99463 0.91444 1.01237 1.19295 0.93523 0.93640 0.98401 1.20610 1.01888 0.95729 0.95585 1.20040 0.78257 0.79032 0.90680 1.90666 1.52778 1.53299 1.46462 1.50194 1.54095 1.20757 1.11903 1.23278 0.99079 0.88173 0.89349 1.20143 0.83875 0.88648 0.89807 1.86256 1.36252 1.50679 1.64111 1.22236 1.10753 1.11481 1.21093 0.91675 1.25979 0.98654 0.99166 0.93062 1.70952 1.27915 1.35352 1.19189 0.83584 0.75189 0.75794 0.76120 1.20551 1.21115 1.20998 1.24477 0.97403 0.85910 0.97613 1.20853 0.93423 0.97619 1.00955 0.91336 0.91521 0.91712 0.86441 0.91365 0.91716 0.91598 0.86426 0.88381 0.88281 0.91083 0.89428 0.77641 0.92036 0.89502 0.91645 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.01 0.36 -0.75 16 2 C -0.08 -1.10 5.88 -104.62 -0.62 -1.71 16 3 C -0.13 -1.55 9.36 -39.59 -0.37 -1.92 16 4 C -0.09 -1.09 5.88 -104.63 -0.62 -1.71 16 5 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 6 C -0.11 -1.60 9.36 -39.58 -0.37 -1.97 16 7 C -0.05 -0.74 4.37 -104.62 -0.46 -1.20 16 8 C -0.10 -1.54 5.58 -29.03 -0.16 -1.70 16 9 C 0.53 10.66 8.05 -10.98 -0.09 10.57 16 10 O -0.55 -12.86 16.76 5.56 0.09 -12.76 16 11 N -0.64 -13.18 3.61 -178.25 -0.64 -13.83 16 12 C 0.12 2.69 8.22 -2.97 -0.02 2.67 16 13 C 0.22 5.06 1.08 -90.83 -0.10 4.96 16 14 O -0.57 -13.85 13.45 -35.23 -0.47 -14.33 16 15 C -0.62 -15.55 8.56 -34.44 -0.29 -15.85 16 16 H 0.07 1.63 7.85 -52.49 -0.41 1.22 16 17 C 0.04 0.94 5.26 -17.82 -0.09 0.84 16 18 N -0.90 -23.30 12.80 55.43 0.71 -22.59 16 19 Si 1.07 22.56 29.93 -169.99 -5.09 17.47 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 C 0.07 1.42 7.05 -2.95 -0.02 1.40 16 24 C -0.11 -1.62 9.36 -39.58 -0.37 -1.99 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.10 1.34 8.08 -51.93 -0.42 0.92 16 34 H 0.10 1.42 8.08 -51.93 -0.42 1.00 16 35 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 37 H 0.37 8.92 6.95 45.56 0.32 9.23 16 38 H 0.27 6.72 5.53 -40.82 -0.23 6.50 16 39 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 40 H 0.07 1.28 7.80 -51.92 -0.41 0.88 16 41 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -30.17 347.34 -8.45 -38.61 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -5.42 Total: 11.25 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -2.86 Total: -9.06 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.07 Total: -36.41 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.38 Total: -27.09 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.09 Total: 17.47 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.17 -8.45 -38.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331166753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.030 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds