Wall clock time and date at job start Tue Mar 31 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 120.00440 * 2 1 4 4 C 1.38230 * 120.00176 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.99658 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00383 * 359.97438 * 4 3 2 7 7 C 1.38235 * 119.99572 * 359.95968 * 6 4 3 8 8 C 1.50705 * 119.99834 * 179.97438 * 7 6 4 9 9 C 1.50707 * 109.46846 * 89.99992 * 8 7 6 10 10 O 1.21279 * 119.99658 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00011 * 179.97438 * 9 8 7 12 12 C 1.47584 * 134.49657 * 179.97438 * 11 9 8 13 13 C 1.53946 * 86.12025 * 155.36378 * 12 11 9 14 14 O 1.42897 * 113.74068 * 269.15867 * 13 12 11 15 15 C 1.50700 * 113.74246 * 137.95222 * 13 12 11 16 16 H 1.07998 * 119.99659 * 4.91778 * 15 13 12 17 17 C 1.37870 * 120.00275 * 184.91298 * 15 13 12 18 18 N 1.31521 * 119.99939 * 13.83955 * 17 15 13 19 19 Si 1.86793 * 120.00241 * 193.83635 * 17 15 13 20 20 H 1.48503 * 109.47305 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47166 * 299.99995 * 19 17 15 22 22 H 1.48499 * 109.46987 * 59.99962 * 19 17 15 23 23 C 1.47585 * 134.49296 * 0.02562 * 11 9 8 24 24 C 1.38230 * 120.00303 * 0.27409 * 7 6 4 25 25 H 1.08995 * 109.47599 * 89.99878 * 1 2 3 26 26 H 1.09005 * 109.47017 * 210.00177 * 1 2 3 27 27 H 1.09004 * 109.46734 * 329.99330 * 1 2 3 28 28 H 1.08001 * 119.99393 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47119 * 270.01886 * 5 4 3 30 30 H 1.08992 * 109.47361 * 30.02091 * 5 4 3 31 31 H 1.09004 * 109.47319 * 150.02081 * 5 4 3 32 32 H 1.07992 * 120.00529 * 179.97438 * 6 4 3 33 33 H 1.08992 * 109.47417 * 330.00463 * 8 7 6 34 34 H 1.08994 * 109.47515 * 209.99825 * 8 7 6 35 35 H 1.09003 * 113.76727 * 41.05948 * 12 11 9 36 36 H 1.09000 * 113.76915 * 269.66851 * 12 11 9 37 37 H 0.96698 * 114.00098 * 171.44601 * 14 13 12 38 38 H 0.97007 * 119.99483 * 5.87247 * 18 17 15 39 39 H 1.08994 * 113.77423 * 90.33340 * 23 11 9 40 40 H 1.09010 * 113.76672 * 318.93187 * 23 11 9 41 41 H 1.08006 * 120.00006 * 179.72473 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.3340 2.5022 -0.0011 6 6 4.2717 -0.0001 -0.0005 7 6 3.5805 -1.1972 0.0008 8 6 4.3340 -2.5023 0.0003 9 6 4.5871 -2.9368 1.4210 10 8 4.1939 -2.2541 2.3430 11 7 5.2495 -4.0845 1.6668 12 6 5.6637 -4.7980 2.8905 13 6 5.6567 -6.0711 2.0250 14 8 4.4044 -6.7592 2.0238 15 6 6.8285 -6.9840 2.2791 16 1 7.5296 -6.7557 3.0683 17 6 7.0055 -8.1106 1.5044 18 7 6.3293 -8.2519 0.3851 19 14 8.2056 -9.4363 2.0441 20 1 8.2122 -10.5347 1.0447 21 1 9.5686 -8.8566 2.1507 22 1 7.7905 -9.9714 3.3657 23 6 5.8528 -5.1322 0.8203 24 6 2.1982 -1.1972 -0.0035 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5140 28 1 1.6582 2.1324 0.0004 29 1 4.5150 2.8167 -1.0289 30 1 3.7454 3.2618 0.5131 31 1 5.2869 2.3719 0.5121 32 1 5.3517 -0.0001 -0.0014 33 1 5.2857 -2.3723 -0.5148 34 1 3.7443 -3.2622 -0.5124 35 1 4.9085 -4.7970 3.6765 36 1 6.6535 -4.5163 3.2496 37 1 4.3533 -7.4820 1.3836 38 1 5.7711 -7.5277 0.0611 39 1 6.8981 -4.9486 0.5720 40 1 5.2485 -5.3982 -0.0471 41 1 1.6582 -2.1325 -0.0069 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331166753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:20 Heat of formation + Delta-G solvation = -60.624776 kcal Electronic energy + Delta-G solvation = -22515.887224 eV Core-core repulsion = 19167.413855 eV Total energy + Delta-G solvation = -3348.473370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.51750 -40.53636 -39.13475 -36.13802 -34.52043 -34.41852 -34.34383 -30.97560 -28.96356 -27.91837 -27.60717 -27.25796 -26.44433 -22.66557 -21.67002 -21.54970 -20.22029 -19.61030 -18.10768 -17.37626 -17.14274 -16.97448 -16.66806 -16.26737 -15.71058 -15.52397 -15.27763 -14.86589 -14.61035 -14.24087 -14.02401 -13.98493 -13.89146 -13.85371 -13.45190 -13.36974 -13.25589 -12.97991 -12.65124 -12.61372 -12.42209 -12.35442 -11.96120 -11.91131 -11.90627 -11.21219 -11.16670 -10.73302 -10.24930 -9.68083 -9.55022 -9.47515 -8.68096 -6.48766 0.35063 0.42429 1.53151 1.61186 1.64853 1.83633 1.86574 2.55661 2.73874 2.90935 3.37564 3.57052 3.68655 3.78566 3.90054 3.90923 4.17033 4.21952 4.32131 4.37071 4.40621 4.47673 4.52454 4.56997 4.61554 4.66002 4.66240 4.78558 4.81621 4.82912 4.94885 4.97429 5.03888 5.22168 5.32888 5.56932 5.59831 5.67506 5.73735 6.08458 6.10715 6.45656 6.70986 6.92251 7.04965 7.27018 8.65118 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032137 B = 0.003245 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.056099 B = 8627.460927 C = 8947.342199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.091 4.091 3 C -0.130 4.130 4 C -0.091 4.091 5 C -0.110 4.110 6 C -0.131 4.131 7 C -0.069 4.069 8 C -0.088 4.088 9 C 0.527 3.473 10 O -0.588 6.588 11 N -0.636 5.636 12 C 0.120 3.880 13 C 0.198 3.802 14 O -0.577 6.577 15 C -0.634 4.634 16 H 0.060 0.940 17 C 0.001 3.999 18 N -0.914 5.914 19 Si 1.109 2.891 20 H -0.283 1.283 21 H -0.270 1.270 22 H -0.279 1.279 23 C 0.086 3.914 24 C -0.135 4.135 25 H 0.084 0.916 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.374 0.626 38 H 0.265 0.735 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.886 15.599 -5.587 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.091 4.091 5 C -0.166 4.166 6 C -0.149 4.149 7 C -0.070 4.070 8 C -0.127 4.127 9 C 0.318 3.682 10 O -0.469 6.469 11 N -0.370 5.370 12 C -0.003 4.003 13 C 0.158 3.842 14 O -0.384 6.384 15 C -0.672 4.672 16 H 0.079 0.921 17 C -0.201 4.201 18 N -0.551 5.551 19 Si 0.932 3.068 20 H -0.209 1.209 21 H -0.195 1.195 22 H -0.205 1.205 23 C -0.037 4.037 24 C -0.153 4.153 25 H 0.103 0.897 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.163 0.837 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.129 0.871 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.223 0.777 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.780 15.102 -5.074 16.633 hybrid contribution -0.394 0.753 0.154 0.864 sum -5.174 15.856 -4.919 17.389 Atomic orbital electron populations 1.20817 0.89253 1.03337 1.03278 1.20219 0.97574 0.92709 0.98644 1.21196 0.93561 0.98178 1.01834 1.20232 0.94442 0.95870 0.98541 1.20813 0.99735 0.92742 1.03310 1.21034 0.99978 0.91880 1.02045 1.19396 0.93977 0.93763 0.99854 1.20599 1.03292 0.96381 0.92468 1.20835 0.76976 0.78123 0.92232 1.90638 1.54002 1.54241 1.48066 1.50218 1.54306 1.21166 1.11288 1.23271 0.99432 0.88068 0.89484 1.20340 0.83056 0.88975 0.91847 1.86241 1.36937 1.50893 1.64366 1.22458 1.11266 1.12389 1.21070 0.92123 1.27064 0.99508 1.00838 0.92714 1.71015 1.28690 1.35547 1.19882 0.83008 0.74341 0.73741 0.75740 1.20876 1.19478 1.20472 1.24249 0.97945 0.84652 0.96834 1.21035 0.93531 0.98474 1.02262 0.89716 0.91898 0.90133 0.83703 0.89701 0.90254 0.91608 0.85905 0.86293 0.87146 0.92313 0.88205 0.77654 0.92317 0.88854 0.90593 0.86551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.98 10.01 71.24 0.71 -1.27 16 2 C -0.09 -2.26 5.88 -19.86 -0.12 -2.38 16 3 C -0.13 -2.94 9.36 22.27 0.21 -2.73 16 4 C -0.09 -2.17 5.88 -19.87 -0.12 -2.29 16 5 C -0.11 -1.83 10.01 71.24 0.71 -1.12 16 6 C -0.13 -3.67 9.36 22.27 0.21 -3.46 16 7 C -0.07 -2.12 4.37 -19.87 -0.09 -2.20 16 8 C -0.09 -2.70 5.58 29.11 0.16 -2.53 16 9 C 0.53 21.13 8.05 87.66 0.71 21.84 16 10 O -0.59 -27.66 16.76 -3.03 -0.05 -27.71 16 11 N -0.64 -26.27 3.61 -840.07 -3.03 -29.29 16 12 C 0.12 5.28 8.22 86.48 0.71 5.99 16 13 C 0.20 9.30 1.08 -10.87 -0.01 9.29 16 14 O -0.58 -28.52 13.45 -148.98 -2.00 -30.53 16 15 C -0.63 -31.79 8.56 25.60 0.22 -31.57 16 16 H 0.06 3.02 7.85 -2.91 -0.02 3.00 16 17 C 0.00 0.04 5.26 84.65 0.45 0.48 16 18 N -0.91 -47.07 12.80 21.45 0.27 -46.79 16 19 Si 1.11 44.73 29.93 68.60 2.05 46.79 16 20 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 21 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 22 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 23 C 0.09 3.49 7.05 86.49 0.61 4.10 16 24 C -0.13 -3.94 9.36 22.27 0.21 -3.73 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.17 8.09 -2.38 -0.02 1.15 16 27 H 0.08 1.18 8.09 -2.38 -0.02 1.16 16 28 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.09 8.08 -2.39 -0.02 1.07 16 31 H 0.06 1.10 8.09 -2.39 -0.02 1.08 16 32 H 0.12 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.12 3.09 8.08 -2.39 -0.02 3.07 16 34 H 0.11 3.09 8.08 -2.39 -0.02 3.07 16 35 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.10 4.08 8.09 -2.39 -0.02 4.06 16 37 H 0.37 18.05 6.95 -74.06 -0.52 17.54 16 38 H 0.27 13.29 5.53 -92.70 -0.51 12.77 16 39 H 0.09 3.67 8.09 -2.39 -0.02 3.65 16 40 H 0.08 2.91 7.80 -2.38 -0.02 2.89 16 41 H 0.12 3.29 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -63.85 347.34 2.58 -61.27 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: 0.77 Total: 37.86 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 4.57 Total: -11.59 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -2.76 Total: -76.09 kcal Atomic # 8 Polarization: -56.18 SS G_CDS: -2.06 Total: -58.24 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.05 Total: 46.79 kcal Total: -63.85 2.58 -61.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331166753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.644 kcal (2) G-P(sol) polarization free energy of solvation -63.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds