Wall clock time and date at job start Tue Mar 31 2020 06:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38263 * 120.00423 * 2 1 4 4 C 1.38207 * 120.00545 * 180.23168 * 3 2 1 5 5 C 1.38257 * 119.99627 * 359.81481 * 4 3 2 6 6 C 1.38209 * 120.00397 * 359.97438 * 5 4 3 7 7 C 1.38223 * 120.00193 * 179.79378 * 2 1 3 8 8 C 1.50696 * 119.99559 * 359.97438 * 7 2 1 9 9 H 1.08998 * 109.47383 * 4.95187 * 8 7 2 10 10 C 1.53002 * 109.47019 * 124.94918 * 8 7 2 11 11 C 1.50703 * 109.47100 * 244.94418 * 8 7 2 12 12 O 1.21281 * 119.99982 * 0.02562 * 11 8 7 13 13 N 1.34776 * 119.99674 * 180.02562 * 11 8 7 14 14 C 1.47582 * 134.48653 * 180.02562 * 13 11 8 15 15 C 1.53946 * 86.11742 * 155.35616 * 14 13 11 16 16 O 1.42894 * 113.74267 * 269.15157 * 15 14 13 17 17 C 1.50704 * 113.74142 * 137.94649 * 15 14 13 18 18 H 1.07994 * 120.00241 * 1.92969 * 17 15 14 19 19 C 1.37874 * 119.99747 * 182.20211 * 17 15 14 20 20 N 1.31516 * 119.99951 * 359.72642 * 19 17 15 21 21 Si 1.86801 * 119.99895 * 179.72866 * 19 17 15 22 22 H 1.48496 * 109.47303 * 90.00239 * 21 19 17 23 23 H 1.48508 * 109.47098 * 209.99980 * 21 19 17 24 24 H 1.48497 * 109.47242 * 329.99478 * 21 19 17 25 25 C 1.47813 * 134.46088 * 359.86784 * 13 11 8 26 26 H 1.09004 * 109.47256 * 264.35079 * 1 2 3 27 27 H 1.09002 * 109.47545 * 24.35140 * 1 2 3 28 28 H 1.09005 * 109.47198 * 144.35433 * 1 2 3 29 29 H 1.08005 * 119.99314 * 0.06710 * 3 2 1 30 30 H 1.07995 * 120.00147 * 179.83401 * 4 3 2 31 31 H 1.08004 * 120.00101 * 179.97438 * 5 4 3 32 32 H 1.08007 * 120.00442 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47186 * 179.97438 * 10 8 7 34 34 H 1.08998 * 109.46911 * 300.00122 * 10 8 7 35 35 H 1.08999 * 109.47174 * 59.99517 * 10 8 7 36 36 H 1.09002 * 113.77477 * 41.05561 * 14 13 11 37 37 H 1.09001 * 113.77018 * 269.65341 * 14 13 11 38 38 H 0.96700 * 114.00329 * 178.07324 * 16 15 14 39 39 H 0.97000 * 119.99796 * 179.97438 * 20 19 17 40 40 H 1.08997 * 113.76733 * 90.38184 * 25 13 11 41 41 H 1.08997 * 113.83255 * 318.91731 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0048 5 6 4.2716 0.0000 -0.0058 6 6 3.5806 -1.1969 -0.0014 7 6 2.1981 -1.1970 0.0043 8 6 1.4445 -2.5020 0.0096 9 1 0.3762 -2.3051 -0.0795 10 6 1.9047 -3.3614 -1.1697 11 6 1.7149 -3.2330 1.2994 12 8 2.4471 -2.7423 2.1325 13 7 1.1431 -4.4321 1.5270 14 6 1.1800 -5.4009 2.6398 15 6 -0.1897 -5.8822 2.1278 16 8 -1.2975 -5.2068 2.7265 17 6 -0.3452 -7.3812 2.1288 18 1 0.4538 -8.0068 2.4983 19 6 -1.5053 -7.9542 1.6526 20 7 -2.4783 -7.1924 1.2026 21 14 -1.6951 -9.8126 1.6468 22 1 -2.2987 -10.2526 2.9302 23 1 -2.5757 -10.2167 0.5214 24 1 -0.3618 -10.4458 1.4840 25 6 0.2250 -5.3030 0.7632 26 1 -0.3634 -0.1012 1.0227 27 1 -0.3634 0.9362 -0.4237 28 1 -0.3634 -0.8352 -0.5989 29 1 1.6582 2.1327 0.0011 30 1 4.1203 2.1326 -0.0075 31 1 5.3516 -0.0001 -0.0100 32 1 4.1206 -2.1323 -0.0026 33 1 1.3600 -4.3055 -1.1656 34 1 1.7092 -2.8327 -2.1026 35 1 2.9730 -3.5583 -1.0807 36 1 1.1426 -4.9387 3.6262 37 1 1.9701 -6.1461 2.5475 38 1 -2.1587 -5.4856 2.3863 39 1 -3.2944 -7.5956 0.8673 40 1 0.7339 -6.0193 0.1182 41 1 -0.5733 -4.7627 0.2544 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333467439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:08 Heat of formation + Delta-G solvation = -33.022148 kcal Electronic energy + Delta-G solvation = -23251.669959 eV Core-core repulsion = 19904.393529 eV Total energy + Delta-G solvation = -3347.276430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16101 -38.99258 -37.22207 -34.11078 -33.86166 -32.53105 -32.23799 -29.72947 -28.23358 -26.75495 -25.49785 -25.28275 -24.25066 -21.87928 -20.93651 -19.64886 -18.23319 -17.33714 -16.65239 -16.26532 -15.58281 -15.29501 -15.05084 -14.53558 -14.42830 -14.08846 -13.63900 -13.51028 -13.15782 -12.97296 -12.80179 -12.54583 -12.37461 -12.21076 -11.98458 -11.80717 -11.69016 -11.55972 -11.39581 -11.08194 -11.06759 -10.76084 -10.54245 -10.52779 -10.30068 -9.56851 -9.15077 -8.77902 -8.62932 -8.47621 -8.36413 -7.81999 -6.40849 -4.51047 1.46676 1.55074 3.13689 3.21761 3.23062 3.25040 3.53840 3.96107 4.17663 4.73333 4.81699 4.85539 5.01267 5.03702 5.15606 5.32597 5.34898 5.37720 5.56392 5.64163 5.67883 5.76735 5.83775 5.89312 5.92774 6.04498 6.14886 6.18767 6.25169 6.26101 6.38590 6.50242 6.58324 6.62012 6.65381 6.69204 6.81729 7.08602 7.14962 7.61401 7.81051 8.50723 8.52347 8.80284 9.20226 9.40990 10.65808 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032395 B = 0.003820 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.132006 B = 7329.030569 C = 7518.293142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.079 4.079 3 C -0.125 4.125 4 C -0.122 4.122 5 C -0.129 4.129 6 C -0.084 4.084 7 C -0.056 4.056 8 C -0.074 4.074 9 H 0.105 0.895 10 C -0.141 4.141 11 C 0.534 3.466 12 O -0.557 6.557 13 N -0.632 5.632 14 C 0.112 3.888 15 C 0.238 3.762 16 O -0.572 6.572 17 C -0.537 4.537 18 H 0.071 0.929 19 C 0.073 3.927 20 N -0.898 5.898 21 Si 0.906 3.094 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.271 1.271 25 C 0.080 3.920 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.391 0.609 39 H 0.273 0.727 40 H 0.082 0.918 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.798 10.120 -6.792 13.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.079 4.079 3 C -0.143 4.143 4 C -0.140 4.140 5 C -0.147 4.147 6 C -0.102 4.102 7 C -0.056 4.056 8 C -0.095 4.095 9 H 0.123 0.877 10 C -0.198 4.198 11 C 0.323 3.677 12 O -0.436 6.436 13 N -0.365 5.365 14 C -0.010 4.010 15 C 0.197 3.803 16 O -0.384 6.384 17 C -0.576 4.576 18 H 0.089 0.911 19 C -0.130 4.130 20 N -0.538 5.538 21 Si 0.733 3.267 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.043 4.043 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.246 0.754 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.542 10.847 -6.143 14.078 hybrid contribution -0.575 -1.237 -0.408 1.424 sum 5.967 9.610 -6.550 13.072 Atomic orbital electron populations 1.20875 0.91392 1.02535 1.02787 1.19747 0.95951 0.92584 0.99641 1.20913 0.94239 0.97052 1.02084 1.21040 0.94282 0.97779 1.00919 1.21040 0.99573 0.92506 1.01612 1.20886 0.93542 0.97977 0.97788 1.19225 0.93597 0.92946 0.99841 1.20291 1.01810 0.92861 0.94497 0.87703 1.21811 1.01914 0.99831 0.96284 1.19956 0.79307 0.80650 0.87789 1.90648 1.38342 1.67268 1.47392 1.50195 1.47038 1.16722 1.22553 1.23431 0.98218 0.88353 0.91002 1.19855 0.83618 0.90209 0.86659 1.86065 1.18680 1.66644 1.67013 1.21509 1.02541 0.90732 1.42783 0.91099 1.25056 0.95250 0.99365 0.93304 1.69405 1.06653 1.35873 1.41868 0.86354 0.78370 0.83997 0.77936 1.20272 1.20934 1.19579 1.24315 0.90171 0.90086 0.99729 0.90917 0.91624 0.91100 0.86347 0.86476 0.86419 0.86459 0.91040 0.91690 0.92234 0.91260 0.89754 0.75425 0.91713 0.90035 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.27 36.00 0.33 -1.13 16 2 C -0.08 -1.13 5.88 -104.62 -0.62 -1.74 16 3 C -0.12 -1.59 9.68 -39.58 -0.38 -1.97 16 4 C -0.12 -1.50 10.05 -39.59 -0.40 -1.89 16 5 C -0.13 -1.71 10.05 -39.58 -0.40 -2.10 16 6 C -0.08 -1.28 8.21 -39.59 -0.32 -1.60 16 7 C -0.06 -0.88 4.32 -104.62 -0.45 -1.33 16 8 C -0.07 -1.19 2.54 -92.92 -0.24 -1.43 16 9 H 0.11 1.63 5.55 -51.93 -0.29 1.34 16 10 C -0.14 -1.94 8.82 37.16 0.33 -1.61 16 11 C 0.53 10.86 7.28 -10.98 -0.08 10.78 16 12 O -0.56 -12.98 16.11 5.56 0.09 -12.89 16 13 N -0.63 -13.17 3.57 -178.10 -0.64 -13.80 16 14 C 0.11 2.44 8.23 -2.97 -0.02 2.41 16 15 C 0.24 5.60 1.40 -90.85 -0.13 5.47 16 16 O -0.57 -14.47 13.48 -35.23 -0.48 -14.95 16 17 C -0.54 -13.24 8.61 -34.44 -0.30 -13.53 16 18 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 19 C 0.07 1.78 5.40 -17.82 -0.10 1.68 16 20 N -0.90 -22.19 11.21 55.43 0.62 -21.57 16 21 Si 0.91 19.12 29.54 -169.99 -5.02 14.10 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 C 0.08 1.65 6.29 -2.84 -0.02 1.63 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 28 H 0.07 0.84 6.35 -51.93 -0.33 0.51 16 29 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 30 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.12 1.77 7.27 -52.48 -0.38 1.38 16 33 H 0.07 1.01 6.13 -51.93 -0.32 0.69 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.80 7.12 -51.93 -0.37 0.43 16 36 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.08 1.69 8.09 -51.93 -0.42 1.27 16 38 H 0.39 9.92 6.61 45.56 0.30 10.23 16 39 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 40 H 0.08 1.61 7.91 -51.93 -0.41 1.20 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 337.19 15.07 5.08 5.08 Total: -1.00 -28.49 337.19 -8.27 -36.76 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -5.14 Total: 13.63 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.79 Total: -6.37 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.01 Total: -35.37 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.39 Total: -27.83 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.49 -8.27 -36.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333467439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.736 kcal (2) G-P(sol) polarization free energy of solvation -28.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds