Wall clock time and date at job start Tue Mar 31 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38263 * 120.00423 * 2 1 4 4 C 1.38207 * 120.00545 * 180.23168 * 3 2 1 5 5 C 1.38257 * 119.99627 * 359.81481 * 4 3 2 6 6 C 1.38209 * 120.00397 * 359.97438 * 5 4 3 7 7 C 1.38223 * 120.00193 * 179.79378 * 2 1 3 8 8 C 1.50696 * 119.99559 * 359.97438 * 7 2 1 9 9 H 1.08998 * 109.47383 * 4.95187 * 8 7 2 10 10 C 1.53002 * 109.47019 * 124.94918 * 8 7 2 11 11 C 1.50703 * 109.47100 * 244.94418 * 8 7 2 12 12 O 1.21281 * 119.99982 * 0.02562 * 11 8 7 13 13 N 1.34776 * 119.99674 * 180.02562 * 11 8 7 14 14 C 1.47582 * 134.48653 * 180.02562 * 13 11 8 15 15 C 1.53946 * 86.11742 * 155.35616 * 14 13 11 16 16 O 1.42894 * 113.74267 * 269.15157 * 15 14 13 17 17 C 1.50704 * 113.74142 * 137.94649 * 15 14 13 18 18 H 1.07994 * 120.00241 * 1.92969 * 17 15 14 19 19 C 1.37874 * 119.99747 * 182.20211 * 17 15 14 20 20 N 1.31516 * 119.99951 * 359.72642 * 19 17 15 21 21 Si 1.86801 * 119.99895 * 179.72866 * 19 17 15 22 22 H 1.48496 * 109.47303 * 90.00239 * 21 19 17 23 23 H 1.48508 * 109.47098 * 209.99980 * 21 19 17 24 24 H 1.48497 * 109.47242 * 329.99478 * 21 19 17 25 25 C 1.47813 * 134.46088 * 359.86784 * 13 11 8 26 26 H 1.09004 * 109.47256 * 264.35079 * 1 2 3 27 27 H 1.09002 * 109.47545 * 24.35140 * 1 2 3 28 28 H 1.09005 * 109.47198 * 144.35433 * 1 2 3 29 29 H 1.08005 * 119.99314 * 0.06710 * 3 2 1 30 30 H 1.07995 * 120.00147 * 179.83401 * 4 3 2 31 31 H 1.08004 * 120.00101 * 179.97438 * 5 4 3 32 32 H 1.08007 * 120.00442 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.47186 * 179.97438 * 10 8 7 34 34 H 1.08998 * 109.46911 * 300.00122 * 10 8 7 35 35 H 1.08999 * 109.47174 * 59.99517 * 10 8 7 36 36 H 1.09002 * 113.77477 * 41.05561 * 14 13 11 37 37 H 1.09001 * 113.77018 * 269.65341 * 14 13 11 38 38 H 0.96700 * 114.00329 * 178.07324 * 16 15 14 39 39 H 0.97000 * 119.99796 * 179.97438 * 20 19 17 40 40 H 1.08997 * 113.76733 * 90.38184 * 25 13 11 41 41 H 1.08997 * 113.83255 * 318.91731 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0048 5 6 4.2716 0.0000 -0.0058 6 6 3.5806 -1.1969 -0.0014 7 6 2.1981 -1.1970 0.0043 8 6 1.4445 -2.5020 0.0096 9 1 0.3762 -2.3051 -0.0795 10 6 1.9047 -3.3614 -1.1697 11 6 1.7149 -3.2330 1.2994 12 8 2.4471 -2.7423 2.1325 13 7 1.1431 -4.4321 1.5270 14 6 1.1800 -5.4009 2.6398 15 6 -0.1897 -5.8822 2.1278 16 8 -1.2975 -5.2068 2.7265 17 6 -0.3452 -7.3812 2.1288 18 1 0.4538 -8.0068 2.4983 19 6 -1.5053 -7.9542 1.6526 20 7 -2.4783 -7.1924 1.2026 21 14 -1.6951 -9.8126 1.6468 22 1 -2.2987 -10.2526 2.9302 23 1 -2.5757 -10.2167 0.5214 24 1 -0.3618 -10.4458 1.4840 25 6 0.2250 -5.3030 0.7632 26 1 -0.3634 -0.1012 1.0227 27 1 -0.3634 0.9362 -0.4237 28 1 -0.3634 -0.8352 -0.5989 29 1 1.6582 2.1327 0.0011 30 1 4.1203 2.1326 -0.0075 31 1 5.3516 -0.0001 -0.0100 32 1 4.1206 -2.1323 -0.0026 33 1 1.3600 -4.3055 -1.1656 34 1 1.7092 -2.8327 -2.1026 35 1 2.9730 -3.5583 -1.0807 36 1 1.1426 -4.9387 3.6262 37 1 1.9701 -6.1461 2.5475 38 1 -2.1587 -5.4856 2.3863 39 1 -3.2944 -7.5956 0.8673 40 1 0.7339 -6.0193 0.1182 41 1 -0.5733 -4.7627 0.2544 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333467439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:07 Heat of formation + Delta-G solvation = -49.980091 kcal Electronic energy + Delta-G solvation = -23252.405311 eV Core-core repulsion = 19904.393529 eV Total energy + Delta-G solvation = -3348.011781 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.58230 -40.37310 -38.84632 -35.82583 -35.22758 -34.14509 -33.55045 -30.99310 -29.78229 -27.74933 -27.23121 -26.99526 -25.49874 -23.08297 -22.13461 -21.20479 -19.87268 -19.13599 -18.05709 -17.56782 -17.15675 -16.86273 -16.35298 -16.12396 -15.89717 -15.49737 -15.00545 -14.66911 -14.50466 -14.44812 -14.05198 -13.95858 -13.87298 -13.43561 -13.41187 -13.23897 -13.00596 -12.81896 -12.78614 -12.73326 -12.53063 -12.22713 -12.20219 -11.81664 -11.61361 -11.32518 -10.86705 -10.61941 -10.21725 -9.67283 -9.55733 -9.47994 -8.25715 -6.42530 0.41924 0.51840 1.47000 1.50908 1.59193 1.64292 1.97411 2.41608 2.86314 2.97469 3.47766 3.58954 3.77093 3.94782 4.04078 4.13035 4.17427 4.18864 4.27189 4.44817 4.47240 4.58819 4.61107 4.70238 4.74116 4.78268 4.80713 4.87472 4.90660 4.94328 5.02512 5.11280 5.20192 5.25528 5.29500 5.59440 5.62574 5.73366 5.74982 5.94031 6.14860 6.62729 6.85766 7.16307 7.31167 7.45100 8.80250 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032395 B = 0.003820 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.132006 B = 7329.030569 C = 7518.293142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.120 4.120 5 C -0.137 4.137 6 C -0.105 4.105 7 C -0.080 4.080 8 C -0.065 4.065 9 H 0.110 0.890 10 C -0.135 4.135 11 C 0.528 3.472 12 O -0.591 6.591 13 N -0.633 5.633 14 C 0.110 3.890 15 C 0.219 3.781 16 O -0.587 6.587 17 C -0.558 4.558 18 H 0.070 0.930 19 C 0.036 3.964 20 N -0.914 5.914 21 Si 0.966 3.034 22 H -0.280 1.280 23 H -0.280 1.280 24 H -0.267 1.267 25 C 0.098 3.902 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.139 0.861 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.388 0.612 39 H 0.276 0.724 40 H 0.093 0.907 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 10.917 -8.106 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.138 4.138 5 C -0.154 4.154 6 C -0.123 4.123 7 C -0.081 4.081 8 C -0.086 4.086 9 H 0.128 0.872 10 C -0.192 4.192 11 C 0.319 3.681 12 O -0.473 6.473 13 N -0.366 5.366 14 C -0.013 4.013 15 C 0.178 3.822 16 O -0.398 6.398 17 C -0.596 4.596 18 H 0.088 0.912 19 C -0.165 4.165 20 N -0.554 5.554 21 Si 0.791 3.209 22 H -0.206 1.206 23 H -0.205 1.205 24 H -0.191 1.191 25 C -0.025 4.025 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.157 0.843 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.242 0.758 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.859 11.647 -7.470 15.443 hybrid contribution -0.648 -1.415 0.054 1.557 sum 6.212 10.232 -7.416 14.081 Atomic orbital electron populations 1.20894 0.90374 1.04019 1.02185 1.20053 0.96970 0.92740 0.99722 1.21304 0.94765 0.97563 1.00946 1.21458 0.94417 0.98676 0.99251 1.21356 1.00823 0.92239 1.01019 1.20983 0.93669 0.98581 0.99040 1.19315 0.93968 0.93104 1.01679 1.20273 1.02306 0.93263 0.92756 0.87247 1.21791 1.01716 0.99411 0.96295 1.20769 0.78337 0.80128 0.88841 1.90616 1.39836 1.67894 1.48927 1.50232 1.47195 1.17030 1.22142 1.23436 0.98059 0.89012 0.90776 1.20124 0.83526 0.90138 0.88413 1.86052 1.19026 1.67045 1.67692 1.21712 1.03042 0.91361 1.43455 0.91170 1.25695 0.94907 1.02998 0.92882 1.69462 1.06882 1.37190 1.41876 0.85428 0.78310 0.79502 0.77617 1.20626 1.20495 1.19149 1.24102 0.90039 0.89885 0.98436 0.92217 0.89049 0.91030 0.83634 0.83314 0.84343 0.87422 0.91496 0.89345 0.92274 0.92687 0.88163 0.75839 0.91449 0.88864 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 9.27 71.23 0.66 -2.07 16 2 C -0.09 -2.57 5.88 -19.87 -0.12 -2.69 16 3 C -0.13 -2.92 9.68 22.27 0.22 -2.71 16 4 C -0.12 -2.61 10.05 22.27 0.22 -2.39 16 5 C -0.14 -3.38 10.05 22.27 0.22 -3.16 16 6 C -0.10 -3.14 8.21 22.27 0.18 -2.96 16 7 C -0.08 -2.48 4.32 -19.86 -0.09 -2.56 16 8 C -0.07 -2.09 2.54 -12.29 -0.03 -2.12 16 9 H 0.11 3.37 5.55 -2.39 -0.01 3.36 16 10 C -0.13 -3.59 8.82 71.98 0.64 -2.96 16 11 C 0.53 21.71 7.28 87.66 0.64 22.35 16 12 O -0.59 -28.11 16.11 -3.03 -0.05 -28.16 16 13 N -0.63 -26.59 3.57 -839.61 -3.00 -29.58 16 14 C 0.11 4.84 8.23 86.49 0.71 5.55 16 15 C 0.22 10.38 1.40 -10.88 -0.02 10.36 16 16 O -0.59 -30.20 13.48 -148.98 -2.01 -32.21 16 17 C -0.56 -27.41 8.61 25.60 0.22 -27.19 16 18 H 0.07 3.37 7.81 -2.91 -0.02 3.35 16 19 C 0.04 1.74 5.40 84.65 0.46 2.20 16 20 N -0.91 -44.85 11.21 21.45 0.24 -44.61 16 21 Si 0.97 38.65 29.54 68.60 2.03 40.68 16 22 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 23 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 24 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 25 C 0.10 4.03 6.29 86.44 0.54 4.58 16 26 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.09 1.58 8.05 -2.39 -0.02 1.56 16 28 H 0.07 1.61 6.35 -2.38 -0.02 1.59 16 29 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 30 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 32 H 0.11 3.30 7.27 -2.91 -0.02 3.28 16 33 H 0.07 1.82 6.13 -2.39 -0.01 1.81 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 1.56 7.12 -2.39 -0.02 1.55 16 36 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.10 4.04 8.09 -2.39 -0.02 4.02 16 38 H 0.39 20.03 6.61 -74.06 -0.49 19.54 16 39 H 0.28 12.83 8.31 -92.71 -0.77 12.06 16 40 H 0.09 3.62 7.91 -2.39 -0.02 3.60 16 41 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -60.65 337.19 2.22 -58.42 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: 0.55 Total: 41.23 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 4.46 Total: -5.77 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -2.76 Total: -74.20 kcal Atomic # 8 Polarization: -58.30 SS G_CDS: -2.06 Total: -60.36 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -60.65 2.22 -58.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333467439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.441 kcal (2) G-P(sol) polarization free energy of solvation -60.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds