Wall clock time and date at job start Tue Mar 31 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38254 * 119.99729 * 2 1 4 4 C 1.38217 * 119.99677 * 179.97438 * 3 2 1 5 5 C 1.38247 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.38218 * 120.00312 * 359.74336 * 5 4 3 7 7 C 1.38211 * 119.99812 * 179.97438 * 2 1 3 8 8 C 1.50691 * 120.00059 * 0.02562 * 7 2 1 9 9 H 1.08996 * 109.47870 * 354.45046 * 8 7 2 10 10 C 1.53003 * 109.47215 * 234.45285 * 8 7 2 11 11 C 1.50706 * 109.47343 * 114.45605 * 8 7 2 12 12 O 1.21280 * 119.99668 * 359.97438 * 11 8 7 13 13 N 1.34776 * 119.99867 * 180.27153 * 11 8 7 14 14 C 1.47060 * 136.05834 * 359.35273 * 13 11 8 15 15 C 1.53764 * 87.88803 * 152.96009 * 14 13 11 16 16 O 1.42895 * 114.39526 * 272.67557 * 15 14 13 17 17 C 1.50700 * 114.26564 * 139.78789 * 15 14 13 18 18 H 1.07993 * 120.00166 * 266.47994 * 17 15 14 19 19 C 1.37880 * 119.99829 * 86.47875 * 17 15 14 20 20 N 1.31516 * 119.99905 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00017 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46843 * 60.00573 * 21 19 17 23 23 H 1.48502 * 109.46939 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47369 * 300.00148 * 21 19 17 25 25 C 1.47070 * 136.05468 * 179.72054 * 13 11 8 26 26 H 1.08997 * 109.47567 * 264.29252 * 1 2 3 27 27 H 1.08996 * 109.47157 * 24.29468 * 1 2 3 28 28 H 1.09002 * 109.47106 * 144.29434 * 1 2 3 29 29 H 1.08004 * 120.00232 * 0.02562 * 3 2 1 30 30 H 1.08005 * 119.99781 * 180.02562 * 4 3 2 31 31 H 1.08005 * 120.00060 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.99807 * 180.27663 * 6 5 4 33 33 H 1.09005 * 109.46856 * 59.99502 * 10 8 7 34 34 H 1.08998 * 109.47855 * 180.02562 * 10 8 7 35 35 H 1.09005 * 109.46795 * 300.00535 * 10 8 7 36 36 H 1.08994 * 113.47101 * 267.69223 * 14 13 11 37 37 H 1.09007 * 113.47113 * 38.13929 * 14 13 11 38 38 H 0.96695 * 114.00651 * 273.57787 * 16 15 14 39 39 H 0.97005 * 119.99852 * 179.97438 * 20 19 17 40 40 H 1.08996 * 113.46791 * 321.87145 * 25 13 11 41 41 H 1.08996 * 113.46519 * 92.25208 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0001 0.0005 6 6 3.5806 -1.1970 0.0054 7 6 2.1981 -1.1970 0.0005 8 6 1.4446 -2.5020 0.0005 9 1 0.3771 -2.3053 0.0995 10 6 1.9154 -3.3627 1.1746 11 6 1.7033 -3.2315 -1.2926 12 8 2.4278 -2.7397 -2.1317 13 7 1.1247 -4.4275 -1.5189 14 6 0.2240 -5.3249 -0.7799 15 6 -0.2702 -5.8533 -2.1367 16 8 -1.3471 -5.1051 -2.7046 17 6 -0.4936 -7.3431 -2.1771 18 1 0.2938 -7.9980 -2.5197 19 6 -1.7032 -7.8699 -1.7766 20 7 -2.6618 -7.0723 -1.3588 21 14 -1.9803 -9.7166 -1.8273 22 1 -0.9880 -10.3902 -0.9515 23 1 -3.3523 -10.0245 -1.3497 24 1 -1.8211 -10.2030 -3.2213 25 6 1.1215 -5.4125 -2.6111 26 1 -0.3634 -0.1022 1.0225 27 1 -0.3633 0.9366 -0.4228 28 1 -0.3633 -0.8345 -0.5998 29 1 1.6582 2.1327 0.0004 30 1 4.1204 2.1327 0.0010 31 1 5.3517 0.0000 0.0014 32 1 4.1207 -2.1322 0.0099 33 1 1.7283 -2.8351 2.1099 34 1 1.3707 -4.3069 1.1744 35 1 2.9829 -3.5595 1.0757 36 1 0.7484 -6.0744 -0.1872 37 1 -0.5432 -4.7986 -0.2119 38 1 -2.2223 -5.3852 -2.4039 39 1 -3.5129 -7.4430 -1.0774 40 1 1.1191 -4.9608 -3.6030 41 1 1.8831 -6.1845 -2.5015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333467442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:10 Heat of formation + Delta-G solvation = -29.084038 kcal Electronic energy + Delta-G solvation = -23234.680517 eV Core-core repulsion = 19887.574857 eV Total energy + Delta-G solvation = -3347.105661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19257 -39.07507 -37.27969 -34.12841 -33.92621 -32.53900 -32.20902 -29.75744 -28.30997 -26.74525 -25.55490 -25.08055 -24.28440 -21.89576 -20.96406 -19.72230 -18.23380 -17.36556 -16.62376 -16.24658 -15.55247 -15.31604 -15.06604 -14.54400 -14.43800 -14.11755 -13.63009 -13.56433 -13.17516 -12.96754 -12.87074 -12.54138 -12.34375 -12.20789 -12.02235 -11.80808 -11.66787 -11.56003 -11.41121 -11.06414 -11.03416 -10.76843 -10.55347 -10.51066 -10.28149 -9.57822 -9.15552 -8.79513 -8.63576 -8.45970 -8.35806 -7.83305 -6.42371 -4.52736 1.46249 1.54624 3.14432 3.20563 3.21476 3.23820 3.54064 3.95897 4.16578 4.72887 4.79779 4.85225 5.02164 5.03571 5.15944 5.33791 5.36641 5.38097 5.55430 5.60923 5.69146 5.73575 5.82548 5.88550 5.92002 6.02902 6.14284 6.18031 6.24866 6.26366 6.41321 6.48832 6.58193 6.62104 6.66491 6.67302 6.81174 7.09251 7.14536 7.60789 7.78860 8.49440 8.54457 8.80001 9.18710 9.47316 10.64180 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032798 B = 0.003794 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.511327 B = 7377.561241 C = 7589.747342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.079 4.079 3 C -0.125 4.125 4 C -0.122 4.122 5 C -0.129 4.129 6 C -0.085 4.085 7 C -0.056 4.056 8 C -0.072 4.072 9 H 0.105 0.895 10 C -0.140 4.140 11 C 0.540 3.460 12 O -0.556 6.556 13 N -0.633 5.633 14 C 0.072 3.928 15 C 0.241 3.759 16 O -0.571 6.571 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.898 5.898 21 Si 0.909 3.091 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.106 3.894 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.394 0.606 39 H 0.274 0.726 40 H 0.065 0.935 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.108 9.723 7.059 13.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.079 4.079 3 C -0.143 4.143 4 C -0.140 4.140 5 C -0.147 4.147 6 C -0.103 4.103 7 C -0.056 4.056 8 C -0.093 4.093 9 H 0.123 0.877 10 C -0.197 4.197 11 C 0.329 3.671 12 O -0.435 6.435 13 N -0.367 5.367 14 C -0.051 4.051 15 C 0.199 3.801 16 O -0.384 6.384 17 C -0.573 4.573 18 H 0.090 0.910 19 C -0.130 4.130 20 N -0.539 5.539 21 Si 0.736 3.264 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.016 4.016 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.250 0.750 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.857 10.493 6.430 14.087 hybrid contribution -0.597 -1.225 0.359 1.409 sum 6.260 9.267 6.789 13.083 Atomic orbital electron populations 1.20869 0.91364 1.03043 1.02345 1.19749 0.95970 0.92569 0.99588 1.20920 0.94237 0.97065 1.02034 1.21045 0.94283 0.97784 1.00905 1.21039 0.99575 0.92502 1.01586 1.20889 0.93538 0.97978 0.97862 1.19221 0.93590 0.92925 0.99871 1.20282 1.01823 0.92836 0.94363 0.87673 1.21799 1.01825 0.99764 0.96351 1.19829 0.79130 0.80164 0.87945 1.90653 1.38704 1.66953 1.47192 1.49693 1.47607 1.16775 1.22583 1.24246 0.90637 0.89942 1.00284 1.19576 0.83917 0.89584 0.87069 1.86046 1.19453 1.61749 1.71153 1.21407 1.00172 0.90822 1.44867 0.91003 1.25071 0.95432 0.99370 0.93108 1.69256 1.05357 1.35668 1.43608 0.86370 0.77472 0.83729 0.78850 1.19864 1.20977 1.19832 1.23314 0.98420 0.88450 0.91415 0.91069 0.91552 0.91009 0.86329 0.86466 0.86410 0.86460 0.91656 0.91109 0.92236 0.90122 0.91794 0.75002 0.91517 0.91668 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 9.14 36.01 0.33 -1.15 16 2 C -0.08 -1.13 5.88 -104.62 -0.62 -1.74 16 3 C -0.12 -1.58 9.68 -39.58 -0.38 -1.97 16 4 C -0.12 -1.49 10.05 -39.59 -0.40 -1.89 16 5 C -0.13 -1.70 10.05 -39.59 -0.40 -2.10 16 6 C -0.08 -1.28 8.24 -39.58 -0.33 -1.61 16 7 C -0.06 -0.88 4.31 -104.63 -0.45 -1.33 16 8 C -0.07 -1.17 2.51 -92.92 -0.23 -1.40 16 9 H 0.11 1.65 5.71 -51.93 -0.30 1.35 16 10 C -0.14 -1.92 8.82 37.16 0.33 -1.59 16 11 C 0.54 11.03 7.30 -10.98 -0.08 10.95 16 12 O -0.56 -13.01 16.18 5.56 0.09 -12.92 16 13 N -0.63 -13.27 3.64 -185.04 -0.67 -13.95 16 14 C 0.07 1.50 6.16 -8.37 -0.05 1.45 16 15 C 0.24 5.69 1.58 -91.12 -0.14 5.54 16 16 O -0.57 -14.61 13.55 -35.23 -0.48 -15.08 16 17 C -0.53 -13.15 8.70 -34.44 -0.30 -13.45 16 18 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 19 C 0.07 1.77 5.39 -17.82 -0.10 1.68 16 20 N -0.90 -22.28 11.01 55.43 0.61 -21.67 16 21 Si 0.91 19.06 29.54 -169.99 -5.02 14.04 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 C 0.11 2.32 8.02 -8.50 -0.07 2.26 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 28 H 0.07 1.00 6.54 -51.93 -0.34 0.66 16 29 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 30 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 32 H 0.12 1.75 7.24 -52.49 -0.38 1.37 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.00 6.34 -51.93 -0.33 0.67 16 35 H 0.06 0.80 7.09 -51.93 -0.37 0.43 16 36 H 0.08 1.58 8.07 -51.93 -0.42 1.16 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.39 10.12 6.33 45.56 0.29 10.41 16 39 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 40 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 41 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 LS Contribution 337.40 15.07 5.08 5.08 Total: -1.00 -28.57 337.40 -8.46 -37.03 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -5.19 Total: 13.82 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -2.89 Total: -6.36 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.06 Total: -35.61 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.39 Total: -28.01 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.57 -8.46 -37.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333467442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.947 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds