Wall clock time and date at job start Tue Mar 31 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38254 * 119.99729 * 2 1 4 4 C 1.38217 * 119.99677 * 179.97438 * 3 2 1 5 5 C 1.38247 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.38218 * 120.00312 * 359.74336 * 5 4 3 7 7 C 1.38211 * 119.99812 * 179.97438 * 2 1 3 8 8 C 1.50691 * 120.00059 * 0.02562 * 7 2 1 9 9 H 1.08996 * 109.47870 * 354.45046 * 8 7 2 10 10 C 1.53003 * 109.47215 * 234.45285 * 8 7 2 11 11 C 1.50706 * 109.47343 * 114.45605 * 8 7 2 12 12 O 1.21280 * 119.99668 * 359.97438 * 11 8 7 13 13 N 1.34776 * 119.99867 * 180.27153 * 11 8 7 14 14 C 1.47060 * 136.05834 * 359.35273 * 13 11 8 15 15 C 1.53764 * 87.88803 * 152.96009 * 14 13 11 16 16 O 1.42895 * 114.39526 * 272.67557 * 15 14 13 17 17 C 1.50700 * 114.26564 * 139.78789 * 15 14 13 18 18 H 1.07993 * 120.00166 * 266.47994 * 17 15 14 19 19 C 1.37880 * 119.99829 * 86.47875 * 17 15 14 20 20 N 1.31516 * 119.99905 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00017 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46843 * 60.00573 * 21 19 17 23 23 H 1.48502 * 109.46939 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47369 * 300.00148 * 21 19 17 25 25 C 1.47070 * 136.05468 * 179.72054 * 13 11 8 26 26 H 1.08997 * 109.47567 * 264.29252 * 1 2 3 27 27 H 1.08996 * 109.47157 * 24.29468 * 1 2 3 28 28 H 1.09002 * 109.47106 * 144.29434 * 1 2 3 29 29 H 1.08004 * 120.00232 * 0.02562 * 3 2 1 30 30 H 1.08005 * 119.99781 * 180.02562 * 4 3 2 31 31 H 1.08005 * 120.00060 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.99807 * 180.27663 * 6 5 4 33 33 H 1.09005 * 109.46856 * 59.99502 * 10 8 7 34 34 H 1.08998 * 109.47855 * 180.02562 * 10 8 7 35 35 H 1.09005 * 109.46795 * 300.00535 * 10 8 7 36 36 H 1.08994 * 113.47101 * 267.69223 * 14 13 11 37 37 H 1.09007 * 113.47113 * 38.13929 * 14 13 11 38 38 H 0.96695 * 114.00651 * 273.57787 * 16 15 14 39 39 H 0.97005 * 119.99852 * 179.97438 * 20 19 17 40 40 H 1.08996 * 113.46791 * 321.87145 * 25 13 11 41 41 H 1.08996 * 113.46519 * 92.25208 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0001 0.0005 6 6 3.5806 -1.1970 0.0054 7 6 2.1981 -1.1970 0.0005 8 6 1.4446 -2.5020 0.0005 9 1 0.3771 -2.3053 0.0995 10 6 1.9154 -3.3627 1.1746 11 6 1.7033 -3.2315 -1.2926 12 8 2.4278 -2.7397 -2.1317 13 7 1.1247 -4.4275 -1.5189 14 6 0.2240 -5.3249 -0.7799 15 6 -0.2702 -5.8533 -2.1367 16 8 -1.3471 -5.1051 -2.7046 17 6 -0.4936 -7.3431 -2.1771 18 1 0.2938 -7.9980 -2.5197 19 6 -1.7032 -7.8699 -1.7766 20 7 -2.6618 -7.0723 -1.3588 21 14 -1.9803 -9.7166 -1.8273 22 1 -0.9880 -10.3902 -0.9515 23 1 -3.3523 -10.0245 -1.3497 24 1 -1.8211 -10.2030 -3.2213 25 6 1.1215 -5.4125 -2.6111 26 1 -0.3634 -0.1022 1.0225 27 1 -0.3633 0.9366 -0.4228 28 1 -0.3633 -0.8345 -0.5998 29 1 1.6582 2.1327 0.0004 30 1 4.1204 2.1327 0.0010 31 1 5.3517 0.0000 0.0014 32 1 4.1207 -2.1322 0.0099 33 1 1.7283 -2.8351 2.1099 34 1 1.3707 -4.3069 1.1744 35 1 2.9829 -3.5595 1.0757 36 1 0.7484 -6.0744 -0.1872 37 1 -0.5432 -4.7986 -0.2119 38 1 -2.2223 -5.3852 -2.4039 39 1 -3.5129 -7.4430 -1.0774 40 1 1.1191 -4.9608 -3.6030 41 1 1.8831 -6.1845 -2.5015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333467442.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:10 Heat of formation + Delta-G solvation = -46.197069 kcal Electronic energy + Delta-G solvation = -23235.422594 eV Core-core repulsion = 19887.574857 eV Total energy + Delta-G solvation = -3347.847737 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.64415 -40.44748 -38.89465 -35.91490 -35.24008 -34.12067 -33.56140 -31.04158 -29.83956 -27.74603 -27.29228 -26.80069 -25.53229 -23.11321 -22.17785 -21.25139 -19.89660 -19.15415 -18.02057 -17.56225 -17.14366 -16.88447 -16.38079 -16.12216 -15.92364 -15.51071 -15.01037 -14.75436 -14.52213 -14.48786 -14.06905 -13.95652 -13.86361 -13.41661 -13.37935 -13.28033 -13.01664 -12.78183 -12.76271 -12.72107 -12.54337 -12.22034 -12.17810 -11.82429 -11.63572 -11.33686 -10.88046 -10.62518 -10.20749 -9.67684 -9.57923 -9.47885 -8.26965 -6.44076 0.41518 0.51523 1.49125 1.51369 1.58358 1.62451 1.98103 2.41402 2.86293 2.95499 3.48678 3.58805 3.75206 3.92276 4.03073 4.12743 4.15007 4.19259 4.26560 4.43268 4.46012 4.59590 4.61760 4.70142 4.73255 4.78440 4.79977 4.87474 4.90701 4.92416 5.00543 5.10622 5.20031 5.24705 5.28646 5.59124 5.62255 5.73062 5.74274 5.91409 6.14509 6.61363 6.88046 7.14824 7.30009 7.49419 8.79001 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032798 B = 0.003794 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.511327 B = 7377.561241 C = 7589.747342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.120 4.120 5 C -0.136 4.136 6 C -0.105 4.105 7 C -0.081 4.081 8 C -0.063 4.063 9 H 0.109 0.891 10 C -0.134 4.134 11 C 0.534 3.466 12 O -0.590 6.590 13 N -0.635 5.635 14 C 0.090 3.910 15 C 0.220 3.780 16 O -0.587 6.587 17 C -0.555 4.555 18 H 0.074 0.926 19 C 0.034 3.966 20 N -0.916 5.916 21 Si 0.970 3.030 22 H -0.266 1.266 23 H -0.282 1.282 24 H -0.276 1.276 25 C 0.104 3.896 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.139 0.861 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.390 0.610 39 H 0.277 0.723 40 H 0.048 0.952 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 10.437 8.379 14.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.138 4.138 5 C -0.154 4.154 6 C -0.123 4.123 7 C -0.081 4.081 8 C -0.084 4.084 9 H 0.126 0.874 10 C -0.191 4.191 11 C 0.325 3.675 12 O -0.472 6.472 13 N -0.368 5.368 14 C -0.033 4.033 15 C 0.178 3.822 16 O -0.400 6.400 17 C -0.593 4.593 18 H 0.092 0.908 19 C -0.166 4.166 20 N -0.557 5.557 21 Si 0.795 3.205 22 H -0.191 1.191 23 H -0.208 1.208 24 H -0.201 1.201 25 C -0.018 4.018 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.157 0.843 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.245 0.755 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.263 11.209 7.763 15.448 hybrid contribution -0.695 -1.370 -0.107 1.540 sum 6.568 9.839 7.656 14.091 Atomic orbital electron populations 1.20879 0.90404 1.02978 1.03130 1.20053 0.96950 0.92768 0.99688 1.21299 0.94773 0.97532 1.00964 1.21463 0.94397 0.98700 0.99204 1.21359 1.00842 0.92223 1.00996 1.20991 0.93625 0.98622 0.99044 1.19306 0.93987 0.93043 1.01787 1.20267 1.02256 0.93279 0.92620 0.87363 1.21783 1.01669 0.99331 0.96330 1.20675 0.78142 0.79620 0.89024 1.90619 1.40231 1.67580 1.48749 1.49757 1.47769 1.17087 1.22177 1.24027 0.90457 0.89887 0.98910 1.19855 0.83857 0.89531 0.88945 1.86031 1.19784 1.62308 1.71849 1.21631 1.00759 0.91346 1.45516 0.90805 1.25746 0.95112 1.03105 0.92657 1.69317 1.05602 1.37048 1.43716 0.85421 0.77415 0.79129 0.78558 1.19088 1.20756 1.20130 1.23337 0.98234 0.89209 0.91058 0.89363 0.89863 0.93230 0.83636 0.83287 0.84294 0.87336 0.89299 0.91549 0.92184 0.88667 0.91774 0.75453 0.91299 0.93312 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.76 9.14 71.24 0.65 -2.10 16 2 C -0.09 -2.58 5.88 -19.87 -0.12 -2.70 16 3 C -0.13 -2.93 9.68 22.27 0.22 -2.71 16 4 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 5 C -0.14 -3.36 10.05 22.27 0.22 -3.14 16 6 C -0.10 -3.13 8.24 22.27 0.18 -2.95 16 7 C -0.08 -2.51 4.31 -19.87 -0.09 -2.59 16 8 C -0.06 -2.05 2.51 -12.29 -0.03 -2.08 16 9 H 0.11 3.40 5.71 -2.39 -0.01 3.38 16 10 C -0.13 -3.56 8.82 71.98 0.64 -2.92 16 11 C 0.53 22.13 7.30 87.66 0.64 22.77 16 12 O -0.59 -28.27 16.18 -3.03 -0.05 -28.32 16 13 N -0.64 -26.87 3.64 -858.20 -3.12 -29.99 16 14 C 0.09 3.73 6.16 83.27 0.51 4.24 16 15 C 0.22 10.48 1.58 -11.12 -0.02 10.46 16 16 O -0.59 -30.68 13.55 -148.98 -2.02 -32.70 16 17 C -0.55 -27.23 8.70 25.60 0.22 -27.01 16 18 H 0.07 3.50 7.81 -2.91 -0.02 3.48 16 19 C 0.03 1.66 5.39 84.66 0.46 2.12 16 20 N -0.92 -45.28 11.01 21.45 0.24 -45.04 16 21 Si 0.97 38.50 29.54 68.60 2.03 40.53 16 22 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 23 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 25 C 0.10 4.63 8.02 83.18 0.67 5.30 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.08 1.62 8.05 -2.39 -0.02 1.60 16 28 H 0.05 1.37 6.54 -2.39 -0.02 1.36 16 29 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 31 H 0.14 2.71 8.06 -2.91 -0.02 2.68 16 32 H 0.11 3.30 7.24 -2.91 -0.02 3.28 16 33 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.07 1.80 6.34 -2.39 -0.02 1.79 16 35 H 0.06 1.57 7.09 -2.38 -0.02 1.56 16 36 H 0.10 3.65 8.07 -2.39 -0.02 3.64 16 37 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 38 H 0.39 20.50 6.33 -74.06 -0.47 20.03 16 39 H 0.28 12.98 8.31 -92.70 -0.77 12.21 16 40 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.10 4.08 8.10 -2.39 -0.02 4.06 16 Total: -1.00 -61.17 337.40 2.02 -59.15 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: 0.57 Total: 42.08 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 4.38 Total: -5.70 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -2.89 Total: -75.03 kcal Atomic # 8 Polarization: -58.96 SS G_CDS: -2.07 Total: -61.03 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -61.17 2.02 -59.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333467442.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.948 kcal (2) G-P(sol) polarization free energy of solvation -61.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds