Wall clock time and date at job start Tue Mar 31 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 115.55007 * 2 1 4 4 C 1.52997 * 109.47228 * 34.32613 * 3 2 1 5 5 C 1.50696 * 109.47480 * 180.02562 * 4 3 2 6 6 O 1.21294 * 119.99982 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00408 * 179.97438 * 5 4 3 8 8 C 1.39990 * 120.00278 * 175.48806 * 7 5 4 9 9 C 1.38915 * 120.00671 * 214.84948 * 8 7 5 10 10 C 1.38004 * 120.00422 * 179.79325 * 9 8 7 11 11 C 1.38906 * 119.99473 * 0.46686 * 10 9 8 12 12 O 1.35776 * 119.99765 * 179.77153 * 11 10 9 13 13 C 1.34812 * 117.00580 * 185.36353 * 12 11 10 14 14 H 1.08006 * 119.99773 * 354.95803 * 13 12 11 15 15 C 1.38632 * 120.00656 * 174.95893 * 13 12 11 16 16 N 1.31572 * 120.00316 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99644 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47084 * 89.99947 * 17 15 13 19 19 H 1.48496 * 109.47047 * 209.99750 * 17 15 13 20 20 H 1.48505 * 109.47496 * 330.00020 * 17 15 13 21 21 C 1.38908 * 120.00565 * 359.78257 * 11 10 9 22 22 C 1.38002 * 120.00052 * 359.97438 * 21 11 10 23 23 C 1.53004 * 117.52043 * 145.69873 * 2 1 3 24 24 C 1.53000 * 59.99987 * 107.48537 * 23 2 1 25 25 H 1.09000 * 109.46936 * 85.58760 * 1 2 3 26 26 H 1.09004 * 109.46659 * 205.58080 * 1 2 3 27 27 H 1.08994 * 109.47289 * 325.58352 * 1 2 3 28 28 H 1.09003 * 109.47524 * 154.32900 * 3 2 1 29 29 H 1.09005 * 109.47287 * 274.33017 * 3 2 1 30 30 H 1.09000 * 109.47356 * 300.00092 * 4 3 2 31 31 H 1.09002 * 109.46911 * 60.00470 * 4 3 2 32 32 H 0.97003 * 119.99754 * 355.50002 * 7 5 4 33 33 H 1.08005 * 119.99980 * 0.02848 * 9 8 7 34 34 H 1.08000 * 120.00291 * 180.23498 * 10 9 8 35 35 H 0.96999 * 120.00168 * 180.02562 * 16 15 13 36 36 H 1.08001 * 119.99781 * 179.97438 * 21 11 10 37 37 H 1.07999 * 119.99515 * 179.97438 * 22 21 11 38 38 H 1.09004 * 117.50126 * 214.97323 * 23 2 1 39 39 H 1.09003 * 117.49546 * 359.97438 * 23 2 1 40 40 H 1.09005 * 117.49467 * 252.51425 * 24 23 2 41 41 H 1.08997 * 117.50141 * 107.49252 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3803 0.0000 4 6 1.3351 2.3543 0.8134 5 6 1.9846 3.7140 0.8129 6 8 3.0284 3.8873 0.2199 7 7 1.4053 4.7380 1.4706 8 6 2.0545 5.9757 1.5500 9 6 1.9306 6.7530 2.6946 10 6 2.5740 7.9713 2.7744 11 6 3.3377 8.4246 1.7064 12 8 3.9670 9.6252 1.7831 13 6 4.5994 10.0569 0.6735 14 1 4.6596 9.4195 -0.1963 15 6 5.1725 11.3190 0.6488 16 7 5.7901 11.7401 -0.4340 17 14 5.0679 12.4218 2.1529 18 1 6.2421 12.1775 3.0284 19 1 5.0572 13.8436 1.7244 20 1 3.8211 12.1210 2.9016 21 6 3.4575 7.6497 0.5597 22 6 2.8181 6.4292 0.4818 23 6 2.2369 -1.1209 0.7647 24 6 2.2365 -1.1207 -0.7653 25 1 -0.3633 0.0791 -1.0246 26 1 -0.3633 -0.9270 0.4438 27 1 -0.3633 0.8477 0.5808 28 1 3.1822 1.3087 0.4452 29 1 2.2766 1.7417 -1.0248 30 1 0.3427 2.4260 0.3682 31 1 1.2484 1.9931 1.8382 32 1 0.5386 4.6172 1.8891 33 1 1.3337 6.4022 3.5236 34 1 2.4808 8.5739 3.6658 35 1 6.1914 12.6230 -0.4511 36 1 4.0510 8.0025 -0.2708 37 1 2.9110 5.8271 -0.4099 38 1 3.1721 -0.8749 1.2678 39 1 1.6120 -1.8584 1.2683 40 1 1.6113 -1.8583 -1.2685 41 1 3.1714 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334687069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:42 Heat of formation + Delta-G solvation = -17.849153 kcal Electronic energy + Delta-G solvation = -21733.058873 eV Core-core repulsion = 18386.440393 eV Total energy + Delta-G solvation = -3346.618479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.27080 -39.00334 -38.39529 -36.62849 -33.99779 -32.58789 -32.25583 -30.27942 -28.74224 -28.13889 -25.53146 -24.62309 -22.71359 -22.45787 -21.29954 -20.05816 -19.01379 -18.09649 -17.56584 -16.92599 -16.58868 -15.82458 -15.48171 -14.86202 -14.50252 -14.19606 -13.95889 -13.79401 -13.72384 -13.39820 -13.18192 -12.75310 -12.51724 -12.47141 -12.34151 -12.26455 -11.81311 -11.70389 -11.61861 -11.42015 -11.22047 -10.94869 -10.72759 -10.39579 -10.24156 -9.87057 -9.71351 -9.62319 -9.21716 -8.75625 -8.27950 -7.05538 -6.39730 -4.05655 2.00407 2.12655 2.82357 3.23554 3.24940 3.27123 3.40710 3.47452 4.24774 4.37811 4.41593 4.48559 4.62058 4.64929 4.85601 4.92456 5.01316 5.08051 5.12103 5.31636 5.36814 5.44278 5.50573 5.56158 5.62503 5.66351 5.73107 5.81623 5.86122 5.95568 6.08486 6.09767 6.14785 6.26309 6.60441 6.77191 6.91521 7.11752 7.31016 7.56810 7.68869 7.81262 8.04270 8.35916 8.95206 9.57053 10.67917 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.039359 B = 0.002624 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.233515 B =10669.635313 C =11105.593172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.129 4.129 3 C -0.066 4.066 4 C -0.137 4.137 5 C 0.503 3.497 6 O -0.526 6.526 7 N -0.664 5.664 8 C 0.043 3.957 9 C -0.097 4.097 10 C -0.178 4.178 11 C 0.151 3.849 12 O -0.217 6.217 13 C -0.388 4.388 14 H 0.107 0.893 15 C 0.063 3.937 16 N -0.879 5.879 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.259 1.259 21 C -0.207 4.207 22 C -0.067 4.067 23 C -0.177 4.177 24 C -0.176 4.176 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.402 0.598 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.279 0.721 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.407 -21.658 3.742 25.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.129 4.129 3 C -0.104 4.104 4 C -0.177 4.177 5 C 0.290 3.710 6 O -0.402 6.402 7 N -0.309 5.309 8 C -0.050 4.050 9 C -0.117 4.117 10 C -0.198 4.198 11 C 0.099 3.901 12 O -0.122 6.122 13 C -0.464 4.464 14 H 0.124 0.876 15 C -0.141 4.141 16 N -0.517 5.517 17 Si 0.732 3.268 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.184 1.184 21 C -0.227 4.227 22 C -0.087 4.087 23 C -0.214 4.214 24 C -0.213 4.213 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.236 0.764 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.089 0.911 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.499 -21.218 3.385 24.370 hybrid contribution -0.311 0.411 0.663 0.840 sum -11.810 -20.807 4.048 24.265 Atomic orbital electron populations 1.21488 0.92136 1.02198 1.02122 1.21539 0.94793 0.91136 1.05439 1.20856 0.98115 0.90483 1.00958 1.21743 1.00837 0.92060 1.03034 1.20829 0.85208 0.86056 0.78915 1.90721 1.23239 1.83970 1.42222 1.43287 1.22068 1.10030 1.55525 1.17344 1.04461 0.87245 0.95920 1.20355 1.01096 0.94761 0.95478 1.19985 1.02859 0.97832 0.99104 1.19148 0.91166 0.86304 0.93501 1.83560 1.60245 1.30389 1.37989 1.20781 1.32565 1.01503 0.91558 0.87583 1.24471 0.95400 0.96247 0.97945 1.69657 1.34794 1.20105 1.27177 0.86169 0.79824 0.78786 0.82040 1.19895 1.20837 1.18356 1.21238 1.05765 0.95594 1.00080 1.20917 0.95973 0.94600 0.97193 1.23183 1.02529 1.01212 0.94452 1.23027 1.02616 1.01193 0.94452 0.92153 0.92578 0.91383 0.90853 0.90662 0.88543 0.88794 0.76373 0.86594 0.86091 0.91058 0.84599 0.85472 0.88778 0.88995 0.88917 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 9.49 37.16 0.35 -0.41 16 2 C -0.13 -1.00 2.47 -154.51 -0.38 -1.38 16 3 C -0.07 -0.64 4.69 -26.73 -0.13 -0.76 16 4 C -0.14 -1.18 4.71 -27.89 -0.13 -1.31 16 5 C 0.50 6.72 7.67 -10.99 -0.08 6.64 16 6 O -0.53 -9.42 13.42 5.55 0.07 -9.35 16 7 N -0.66 -8.55 5.34 -9.82 -0.05 -8.60 16 8 C 0.04 0.74 6.30 -83.63 -0.53 0.21 16 9 C -0.10 -1.60 9.96 -39.42 -0.39 -1.99 16 10 C -0.18 -3.48 9.99 -39.42 -0.39 -3.87 16 11 C 0.15 3.53 6.65 -39.09 -0.26 3.28 16 12 O -0.22 -5.77 8.58 0.02 0.00 -5.77 16 13 C -0.39 -11.10 9.94 30.88 0.31 -10.79 16 14 H 0.11 3.11 5.43 -52.48 -0.28 2.83 16 15 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 16 N -0.88 -25.69 13.96 55.48 0.77 -24.92 16 17 Si 0.91 21.78 28.62 -169.99 -4.86 16.92 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.26 -6.22 7.11 56.52 0.40 -5.81 16 21 C -0.21 -4.69 9.16 -39.42 -0.36 -5.05 16 22 C -0.07 -1.35 8.69 -39.42 -0.34 -1.69 16 23 C -0.18 -1.30 9.82 -26.73 -0.26 -1.56 16 24 C -0.18 -1.32 9.97 -26.73 -0.27 -1.59 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.31 7.90 -51.93 -0.41 -0.10 16 27 H 0.07 0.36 5.59 -51.93 -0.29 0.07 16 28 H 0.07 0.80 7.86 -51.93 -0.41 0.40 16 29 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 30 H 0.10 0.63 6.45 -51.93 -0.33 0.30 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.40 3.54 8.82 -40.82 -0.36 3.18 16 33 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 34 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 35 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.14 3.25 5.63 -52.49 -0.30 2.95 16 37 H 0.13 2.57 6.22 -52.49 -0.33 2.24 16 38 H 0.09 0.71 8.05 -51.93 -0.42 0.30 16 39 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -32.28 341.33 -7.53 -39.81 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.64 Total: 5.37 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -2.96 Total: -18.60 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.72 Total: -33.52 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.07 Total: -15.11 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.86 Total: 16.92 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.28 -7.53 -39.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334687069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.962 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds