Wall clock time and date at job start Tue Mar 31 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 115.55007 * 2 1 4 4 C 1.52997 * 109.47228 * 34.32613 * 3 2 1 5 5 C 1.50696 * 109.47480 * 180.02562 * 4 3 2 6 6 O 1.21294 * 119.99982 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00408 * 179.97438 * 5 4 3 8 8 C 1.39990 * 120.00278 * 175.48806 * 7 5 4 9 9 C 1.38915 * 120.00671 * 214.84948 * 8 7 5 10 10 C 1.38004 * 120.00422 * 179.79325 * 9 8 7 11 11 C 1.38906 * 119.99473 * 0.46686 * 10 9 8 12 12 O 1.35776 * 119.99765 * 179.77153 * 11 10 9 13 13 C 1.34812 * 117.00580 * 185.36353 * 12 11 10 14 14 H 1.08006 * 119.99773 * 354.95803 * 13 12 11 15 15 C 1.38632 * 120.00656 * 174.95893 * 13 12 11 16 16 N 1.31572 * 120.00316 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99644 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47084 * 89.99947 * 17 15 13 19 19 H 1.48496 * 109.47047 * 209.99750 * 17 15 13 20 20 H 1.48505 * 109.47496 * 330.00020 * 17 15 13 21 21 C 1.38908 * 120.00565 * 359.78257 * 11 10 9 22 22 C 1.38002 * 120.00052 * 359.97438 * 21 11 10 23 23 C 1.53004 * 117.52043 * 145.69873 * 2 1 3 24 24 C 1.53000 * 59.99987 * 107.48537 * 23 2 1 25 25 H 1.09000 * 109.46936 * 85.58760 * 1 2 3 26 26 H 1.09004 * 109.46659 * 205.58080 * 1 2 3 27 27 H 1.08994 * 109.47289 * 325.58352 * 1 2 3 28 28 H 1.09003 * 109.47524 * 154.32900 * 3 2 1 29 29 H 1.09005 * 109.47287 * 274.33017 * 3 2 1 30 30 H 1.09000 * 109.47356 * 300.00092 * 4 3 2 31 31 H 1.09002 * 109.46911 * 60.00470 * 4 3 2 32 32 H 0.97003 * 119.99754 * 355.50002 * 7 5 4 33 33 H 1.08005 * 119.99980 * 0.02848 * 9 8 7 34 34 H 1.08000 * 120.00291 * 180.23498 * 10 9 8 35 35 H 0.96999 * 120.00168 * 180.02562 * 16 15 13 36 36 H 1.08001 * 119.99781 * 179.97438 * 21 11 10 37 37 H 1.07999 * 119.99515 * 179.97438 * 22 21 11 38 38 H 1.09004 * 117.50126 * 214.97323 * 23 2 1 39 39 H 1.09003 * 117.49546 * 359.97438 * 23 2 1 40 40 H 1.09005 * 117.49467 * 252.51425 * 24 23 2 41 41 H 1.08997 * 117.50141 * 107.49252 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3803 0.0000 4 6 1.3351 2.3543 0.8134 5 6 1.9846 3.7140 0.8129 6 8 3.0284 3.8873 0.2199 7 7 1.4053 4.7380 1.4706 8 6 2.0545 5.9757 1.5500 9 6 1.9306 6.7530 2.6946 10 6 2.5740 7.9713 2.7744 11 6 3.3377 8.4246 1.7064 12 8 3.9670 9.6252 1.7831 13 6 4.5994 10.0569 0.6735 14 1 4.6596 9.4195 -0.1963 15 6 5.1725 11.3190 0.6488 16 7 5.7901 11.7401 -0.4340 17 14 5.0679 12.4218 2.1529 18 1 6.2421 12.1775 3.0284 19 1 5.0572 13.8436 1.7244 20 1 3.8211 12.1210 2.9016 21 6 3.4575 7.6497 0.5597 22 6 2.8181 6.4292 0.4818 23 6 2.2369 -1.1209 0.7647 24 6 2.2365 -1.1207 -0.7653 25 1 -0.3633 0.0791 -1.0246 26 1 -0.3633 -0.9270 0.4438 27 1 -0.3633 0.8477 0.5808 28 1 3.1822 1.3087 0.4452 29 1 2.2766 1.7417 -1.0248 30 1 0.3427 2.4260 0.3682 31 1 1.2484 1.9931 1.8382 32 1 0.5386 4.6172 1.8891 33 1 1.3337 6.4022 3.5236 34 1 2.4808 8.5739 3.6658 35 1 6.1914 12.6230 -0.4511 36 1 4.0510 8.0025 -0.2708 37 1 2.9110 5.8271 -0.4099 38 1 3.1721 -0.8749 1.2678 39 1 1.6120 -1.8584 1.2683 40 1 1.6113 -1.8583 -1.2685 41 1 3.1714 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334687069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:39 Heat of formation + Delta-G solvation = -37.898483 kcal Electronic energy + Delta-G solvation = -21733.928277 eV Core-core repulsion = 18386.440393 eV Total energy + Delta-G solvation = -3347.487884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.55758 -40.52131 -39.22654 -38.18629 -35.39593 -34.39038 -33.34117 -31.89087 -29.92477 -28.99349 -27.28238 -25.81517 -24.02747 -23.28700 -22.80680 -21.28597 -19.96042 -19.63029 -19.26407 -18.22265 -17.97033 -16.86735 -16.43484 -16.14664 -15.81187 -15.70164 -15.58407 -15.40357 -14.89143 -14.46952 -14.30043 -14.19184 -14.07581 -13.73385 -13.41290 -13.28422 -13.06318 -12.99742 -12.73964 -12.47508 -12.37235 -12.06635 -12.01472 -11.90609 -11.49485 -11.15136 -10.98163 -10.80829 -10.59204 -10.45897 -9.87139 -8.67863 -8.50154 -6.22821 0.46765 0.51102 1.32177 1.37006 1.53117 1.67593 2.16606 2.28632 2.75844 2.86773 3.02399 3.16192 3.64609 3.75679 3.95097 4.04205 4.07747 4.09267 4.23820 4.35154 4.44928 4.45731 4.60907 4.65520 4.77438 4.80979 4.92452 4.99624 5.04662 5.05852 5.14828 5.19135 5.20533 5.28855 5.29811 5.37736 5.49447 5.51869 5.60218 5.74284 5.91007 6.19896 6.57594 6.83352 7.28994 7.56082 8.61812 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.039359 B = 0.002624 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.233515 B =10669.635313 C =11105.593172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.129 4.129 3 C -0.067 4.067 4 C -0.122 4.122 5 C 0.499 3.501 6 O -0.577 6.577 7 N -0.650 5.650 8 C 0.069 3.931 9 C -0.079 4.079 10 C -0.168 4.168 11 C 0.111 3.889 12 O -0.240 6.240 13 C -0.401 4.401 14 H 0.074 0.926 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.977 3.023 18 H -0.266 1.266 19 H -0.268 1.268 20 H -0.257 1.257 21 C -0.225 4.225 22 C -0.084 4.084 23 C -0.173 4.173 24 C -0.186 4.186 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.429 0.571 33 H 0.175 0.825 34 H 0.145 0.855 35 H 0.285 0.715 36 H 0.103 0.897 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.758 -23.813 6.957 29.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.129 4.129 3 C -0.105 4.105 4 C -0.161 4.161 5 C 0.289 3.711 6 O -0.455 6.455 7 N -0.298 5.298 8 C -0.025 4.025 9 C -0.098 4.098 10 C -0.187 4.187 11 C 0.062 3.938 12 O -0.148 6.148 13 C -0.477 4.477 14 H 0.092 0.908 15 C -0.191 4.191 16 N -0.567 5.567 17 Si 0.798 3.202 18 H -0.191 1.191 19 H -0.192 1.192 20 H -0.181 1.181 21 C -0.245 4.245 22 C -0.104 4.104 23 C -0.210 4.210 24 C -0.223 4.223 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.146 0.854 31 H 0.143 0.857 32 H 0.268 0.732 33 H 0.192 0.808 34 H 0.162 0.838 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.137 0.863 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.917 -23.440 6.618 28.561 hybrid contribution 0.593 0.696 -0.378 0.990 sum -14.324 -22.744 6.240 27.593 Atomic orbital electron populations 1.21525 0.90384 1.03418 1.02552 1.21528 0.95913 0.89831 1.05629 1.20790 0.97758 0.92142 0.99784 1.21786 1.01204 0.88225 1.04922 1.21789 0.84493 0.87570 0.77236 1.90729 1.25781 1.84864 1.44171 1.43246 1.22983 1.08100 1.55452 1.17510 1.01871 0.88402 0.94669 1.20883 0.99801 0.92843 0.96313 1.20426 1.01108 0.98896 0.98298 1.19692 0.93059 0.85865 0.95230 1.83498 1.62222 1.32191 1.36854 1.20676 1.33580 1.01738 0.91733 0.90810 1.25367 0.94982 0.97563 1.01215 1.69752 1.36566 1.21021 1.29356 0.85130 0.79887 0.77139 0.78013 1.19082 1.19237 1.18093 1.21124 1.06654 0.97092 0.99610 1.20917 0.97266 0.93715 0.98506 1.23231 1.02428 1.01211 0.94132 1.23090 1.02507 1.01722 0.94940 0.92188 0.91560 0.89942 0.92982 0.92772 0.85360 0.85669 0.73160 0.80776 0.83752 0.90539 0.87895 0.86276 0.89499 0.87445 0.87792 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.49 71.98 0.68 -0.37 16 2 C -0.13 -1.70 2.47 -52.18 -0.13 -1.82 16 3 C -0.07 -1.19 4.69 30.59 0.14 -1.04 16 4 C -0.12 -1.64 4.71 29.85 0.14 -1.50 16 5 C 0.50 12.06 7.67 87.66 0.67 12.74 16 6 O -0.58 -20.61 13.42 -3.07 -0.04 -20.65 16 7 N -0.65 -14.03 5.34 -303.38 -1.62 -15.65 16 8 C 0.07 2.19 6.30 38.16 0.24 2.43 16 9 C -0.08 -2.24 9.96 22.38 0.22 -2.01 16 10 C -0.17 -6.15 9.99 22.37 0.22 -5.92 16 11 C 0.11 5.31 6.65 22.59 0.15 5.46 16 12 O -0.24 -13.26 8.58 -22.85 -0.20 -13.46 16 13 C -0.40 -24.44 9.94 67.91 0.68 -23.76 16 14 H 0.07 4.81 5.43 -2.91 -0.02 4.79 16 15 C 0.01 0.40 5.49 84.83 0.47 0.86 16 16 N -0.93 -56.89 13.96 21.61 0.30 -56.59 16 17 Si 0.98 45.90 28.62 68.60 1.96 47.86 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 21 C -0.22 -10.85 9.16 22.37 0.20 -10.64 16 22 C -0.08 -3.43 8.69 22.38 0.19 -3.24 16 23 C -0.17 -2.17 9.82 30.60 0.30 -1.87 16 24 C -0.19 -2.57 9.97 30.59 0.31 -2.26 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.47 7.90 -2.39 -0.02 0.45 16 27 H 0.08 0.45 5.59 -2.39 -0.01 0.44 16 28 H 0.05 1.13 7.86 -2.39 -0.02 1.11 16 29 H 0.05 1.18 8.10 -2.38 -0.02 1.16 16 30 H 0.13 1.01 6.45 -2.39 -0.02 0.99 16 31 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.43 4.91 8.82 -92.71 -0.82 4.09 16 33 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 35 H 0.29 15.98 8.31 -92.71 -0.77 15.21 16 36 H 0.10 5.54 5.63 -2.91 -0.02 5.53 16 37 H 0.12 5.04 6.22 -2.91 -0.02 5.02 16 38 H 0.09 1.21 8.05 -2.38 -0.02 1.19 16 39 H 0.11 1.02 8.05 -2.39 -0.02 1.00 16 40 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -77.41 341.33 5.14 -72.27 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.23 Total: 19.17 kcal Atomic # 6 Polarization: -37.45 SS G_CDS: 4.49 Total: -32.96 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -1.32 Total: -72.24 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.24 Total: -34.11 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.96 Total: 47.86 kcal Total: -77.41 5.14 -72.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334687069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.372 kcal (2) G-P(sol) polarization free energy of solvation -77.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds