Wall clock time and date at job start Tue Mar 31 2020 06:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35716 * 117.00164 * 2 1 4 4 C 1.39009 * 119.91010 * 0.02562 * 3 2 1 5 5 C 1.37686 * 120.08649 * 179.76040 * 4 3 2 6 6 C 1.39748 * 119.90908 * 0.49280 * 5 4 3 7 7 C 1.47611 * 120.08698 * 179.76214 * 6 5 4 8 8 O 1.21575 * 120.00128 * 184.87553 * 7 6 5 9 9 N 1.34782 * 119.99520 * 4.87817 * 7 6 5 10 10 C 1.46495 * 119.99380 * 185.07214 * 9 7 6 11 11 C 1.53001 * 109.47050 * 184.99245 * 10 9 7 12 12 C 1.50702 * 115.54655 * 54.24335 * 11 10 9 13 13 H 1.08004 * 119.99848 * 215.59058 * 12 11 10 14 14 C 1.37875 * 120.00242 * 35.31524 * 12 11 10 15 15 N 1.31513 * 119.99839 * 355.78758 * 14 12 11 16 16 Si 1.86798 * 119.99964 * 175.78244 * 14 12 11 17 17 H 1.48503 * 109.46825 * 90.00334 * 16 14 12 18 18 H 1.48497 * 109.46933 * 210.00070 * 16 14 12 19 19 H 1.48499 * 109.47072 * 329.99964 * 16 14 12 20 20 C 1.53002 * 117.49882 * 199.90896 * 11 10 9 21 21 C 1.53001 * 117.50159 * 268.56997 * 11 10 9 22 22 C 1.39709 * 119.82562 * 359.48873 * 6 5 4 23 23 C 1.37723 * 119.91129 * 0.25191 * 22 6 5 24 24 C 1.50703 * 119.95435 * 180.02562 * 23 22 6 25 25 H 1.08993 * 109.46893 * 299.99872 * 1 2 3 26 26 H 1.09005 * 109.46988 * 59.99844 * 1 2 3 27 27 H 1.09003 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.95854 * 0.02562 * 4 3 2 29 29 H 1.08006 * 120.04479 * 180.23070 * 5 4 3 30 30 H 0.96997 * 120.00358 * 5.07124 * 9 7 6 31 31 H 1.09003 * 109.47423 * 64.99703 * 10 9 7 32 32 H 1.09000 * 109.47796 * 304.99364 * 10 9 7 33 33 H 0.97003 * 120.00063 * 185.00166 * 15 14 12 34 34 H 1.09004 * 117.49718 * 215.00346 * 20 11 10 35 35 H 1.08991 * 117.50272 * 0.02928 * 20 11 10 36 36 H 1.08999 * 117.49416 * 359.97438 * 21 11 10 37 37 H 1.08999 * 117.49478 * 144.96924 * 21 11 10 38 38 H 1.08002 * 120.04267 * 180.23344 * 22 6 5 39 39 H 1.08997 * 109.46962 * 90.00361 * 24 23 22 40 40 H 1.09004 * 109.46731 * 209.99921 * 24 23 22 41 41 H 1.09005 * 109.47024 * 329.99774 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2863 2.3739 0.0005 5 6 1.9076 3.6026 0.0055 6 6 3.3031 3.6778 -0.0004 7 6 3.9732 4.9930 -0.0004 8 8 5.1835 5.0585 -0.0950 9 7 3.2433 6.1212 0.1046 10 6 3.8953 7.4283 -0.0069 11 6 2.8738 8.5331 0.2706 12 6 2.1311 8.4182 1.5769 13 1 1.0953 8.7183 1.6373 14 6 2.7721 7.9247 2.6934 15 7 4.0052 7.4771 2.5996 16 14 1.8892 7.8921 4.3392 17 1 1.1684 6.6023 4.4887 18 1 2.8805 8.0351 5.4356 19 1 0.9169 9.0128 4.4016 20 6 3.1995 9.9397 -0.2356 21 6 2.1142 9.1097 -0.9257 22 6 4.0622 2.5049 -0.0005 23 6 3.4331 1.2797 -0.0001 24 6 4.2510 0.0139 0.0004 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2079 2.3149 0.0014 29 1 1.3173 4.5070 0.0097 30 1 2.2864 6.0676 0.2539 31 1 4.2970 7.5494 -1.0130 32 1 4.7064 7.4929 0.7184 33 1 4.4307 7.0636 3.3670 34 1 2.8764 10.7821 0.3762 35 1 4.1411 10.0780 -0.7667 36 1 2.3424 8.7022 -1.9106 37 1 1.0770 9.4055 -0.7681 38 1 5.1408 2.5590 -0.0012 39 1 4.4481 -0.2909 1.0281 40 1 3.7006 -0.7744 -0.5132 41 1 5.1957 0.1916 -0.5136 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338151989.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:35 Heat of formation + Delta-G solvation = -26.891899 kcal Electronic energy + Delta-G solvation = -22865.994512 eV Core-core repulsion = 19518.983910 eV Total energy + Delta-G solvation = -3347.010602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.32602 -38.81618 -37.12546 -36.40542 -33.35307 -32.52914 -32.11885 -30.19829 -27.79346 -26.96279 -25.84291 -25.18582 -22.61033 -21.74302 -21.24970 -19.38318 -19.20084 -18.02407 -17.08458 -16.44503 -15.90147 -15.86202 -14.84214 -14.71331 -14.48414 -14.13938 -13.85700 -13.80483 -13.46155 -13.18350 -12.97220 -12.74373 -12.25672 -12.12516 -12.05977 -11.74875 -11.61368 -11.47206 -11.08029 -10.98258 -10.76924 -10.70386 -10.52006 -10.24241 -9.73222 -9.11591 -8.92284 -8.84504 -8.77263 -8.29324 -8.11359 -7.73889 -5.98279 -4.19531 1.19643 1.43196 3.16583 3.20824 3.30773 3.32331 3.39296 4.13178 4.28918 4.35370 4.73483 4.81071 4.94758 4.97686 4.99153 5.26116 5.32409 5.36396 5.44419 5.50411 5.59088 5.70676 5.76250 5.95739 6.01933 6.20489 6.30324 6.34969 6.40707 6.54036 6.60559 6.62414 6.71947 6.79224 6.89746 7.11382 7.25335 7.31809 7.59006 7.68886 7.98834 8.30768 8.61375 8.83020 9.23524 9.44246 10.90168 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.004578 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.978349 B = 6115.030466 C = 6565.398007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.314 6.314 3 C 0.137 3.863 4 C -0.213 4.213 5 C -0.052 4.052 6 C -0.150 4.150 7 C 0.550 3.450 8 O -0.559 6.559 9 N -0.676 5.676 10 C 0.164 3.836 11 C 0.036 3.964 12 C -0.499 4.499 13 H 0.060 0.940 14 C 0.075 3.925 15 N -0.864 5.864 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.199 4.199 21 C -0.213 4.213 22 C -0.029 4.029 23 C -0.130 4.130 24 C -0.101 4.101 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.396 0.604 31 H 0.018 0.982 32 H 0.118 0.882 33 H 0.263 0.737 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.141 0.859 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.092 -13.179 -5.041 15.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.092 3.908 4 C -0.231 4.231 5 C -0.070 4.070 6 C -0.153 4.153 7 C 0.335 3.665 8 O -0.441 6.441 9 N -0.322 5.322 10 C 0.041 3.959 11 C 0.035 3.965 12 C -0.537 4.537 13 H 0.078 0.922 14 C -0.130 4.130 15 N -0.499 5.499 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.237 4.237 21 C -0.250 4.250 22 C -0.048 4.048 23 C -0.130 4.130 24 C -0.158 4.158 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.230 0.770 31 H 0.036 0.964 32 H 0.136 0.864 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.159 0.841 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.979 -13.303 -4.980 15.052 hybrid contribution -1.379 0.298 1.023 1.743 sum -6.358 -13.005 -3.957 15.007 Atomic orbital electron populations 1.23065 0.78521 1.03740 1.01584 1.85998 1.21241 1.27062 1.88462 1.19005 0.91781 0.84049 0.96007 1.21108 0.99975 0.92040 1.10027 1.21195 0.93735 0.97511 0.94599 1.20160 0.93515 0.94601 1.07056 1.17940 0.86857 0.83783 0.77877 1.90687 1.13728 1.87458 1.52185 1.45528 1.11386 1.05673 1.69594 1.21093 0.97220 0.79629 0.97948 1.19247 0.95396 0.89841 0.91991 1.20478 0.97035 1.44334 0.91818 0.92161 1.25002 0.94618 0.94586 0.98783 1.69853 1.11880 1.37603 1.30580 0.86583 0.79382 0.78400 0.83661 1.20644 1.21074 1.19849 1.22937 0.97698 0.98152 1.04934 1.22956 0.96351 1.08462 0.97246 1.21000 1.00610 0.89543 0.93636 1.19162 0.90443 0.96109 1.07324 1.20577 0.98806 0.94159 1.02240 0.92505 0.92572 0.88396 0.85163 0.84983 0.76963 0.96392 0.86412 0.92603 0.90231 0.91449 0.91356 0.90653 0.84145 0.91497 0.91377 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.73 9.52 -18.85 -0.18 -3.91 16 3 C 0.14 1.88 6.67 -39.02 -0.26 1.62 16 4 C -0.21 -2.84 9.01 -39.50 -0.36 -3.20 16 5 C -0.05 -0.80 9.51 -39.22 -0.37 -1.17 16 6 C -0.15 -2.71 5.87 -104.96 -0.62 -3.32 16 7 C 0.55 11.99 7.75 -12.43 -0.10 11.90 16 8 O -0.56 -13.96 16.33 5.30 0.09 -13.87 16 9 N -0.68 -14.75 4.96 -61.33 -0.30 -15.06 16 10 C 0.16 3.91 4.62 -4.04 -0.02 3.89 16 11 C 0.04 0.84 2.04 -155.66 -0.32 0.53 16 12 C -0.50 -12.62 8.43 -34.44 -0.29 -12.91 16 13 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 14 C 0.07 1.92 5.31 -17.82 -0.09 1.83 16 15 N -0.86 -23.24 10.11 55.43 0.56 -22.68 16 16 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 C -0.20 -4.32 9.96 -26.69 -0.27 -4.59 16 21 C -0.21 -4.38 9.92 -26.69 -0.26 -4.65 16 22 C -0.03 -0.47 9.23 -39.22 -0.36 -0.84 16 23 C -0.13 -1.85 5.89 -104.54 -0.62 -2.47 16 24 C -0.10 -1.16 9.78 36.01 0.35 -0.80 16 25 H 0.06 0.42 7.65 -51.93 -0.40 0.03 16 26 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.13 1.37 6.28 -52.49 -0.33 1.04 16 29 H 0.13 1.90 6.46 -52.48 -0.34 1.56 16 30 H 0.40 8.09 6.20 -40.82 -0.25 7.84 16 31 H 0.02 0.42 8.09 -51.93 -0.42 0.00 16 32 H 0.12 3.22 5.89 -51.93 -0.31 2.92 16 33 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 34 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.14 2.30 7.65 -52.49 -0.40 1.90 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.73 7.52 -51.93 -0.39 0.34 16 41 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -29.64 342.06 -8.03 -37.67 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -5.74 Total: 10.48 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -2.59 Total: -12.98 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.26 Total: -37.74 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.09 Total: -17.79 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.64 -8.03 -37.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338151989.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.773 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds