Wall clock time and date at job start Tue Mar 31 2020 06:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35716 * 117.00164 * 2 1 4 4 C 1.39009 * 119.91010 * 0.02562 * 3 2 1 5 5 C 1.37686 * 120.08649 * 179.76040 * 4 3 2 6 6 C 1.39748 * 119.90908 * 0.49280 * 5 4 3 7 7 C 1.47611 * 120.08698 * 179.76214 * 6 5 4 8 8 O 1.21575 * 120.00128 * 184.87553 * 7 6 5 9 9 N 1.34782 * 119.99520 * 4.87817 * 7 6 5 10 10 C 1.46495 * 119.99380 * 185.07214 * 9 7 6 11 11 C 1.53001 * 109.47050 * 184.99245 * 10 9 7 12 12 C 1.50702 * 115.54655 * 54.24335 * 11 10 9 13 13 H 1.08004 * 119.99848 * 215.59058 * 12 11 10 14 14 C 1.37875 * 120.00242 * 35.31524 * 12 11 10 15 15 N 1.31513 * 119.99839 * 355.78758 * 14 12 11 16 16 Si 1.86798 * 119.99964 * 175.78244 * 14 12 11 17 17 H 1.48503 * 109.46825 * 90.00334 * 16 14 12 18 18 H 1.48497 * 109.46933 * 210.00070 * 16 14 12 19 19 H 1.48499 * 109.47072 * 329.99964 * 16 14 12 20 20 C 1.53002 * 117.49882 * 199.90896 * 11 10 9 21 21 C 1.53001 * 117.50159 * 268.56997 * 11 10 9 22 22 C 1.39709 * 119.82562 * 359.48873 * 6 5 4 23 23 C 1.37723 * 119.91129 * 0.25191 * 22 6 5 24 24 C 1.50703 * 119.95435 * 180.02562 * 23 22 6 25 25 H 1.08993 * 109.46893 * 299.99872 * 1 2 3 26 26 H 1.09005 * 109.46988 * 59.99844 * 1 2 3 27 27 H 1.09003 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.95854 * 0.02562 * 4 3 2 29 29 H 1.08006 * 120.04479 * 180.23070 * 5 4 3 30 30 H 0.96997 * 120.00358 * 5.07124 * 9 7 6 31 31 H 1.09003 * 109.47423 * 64.99703 * 10 9 7 32 32 H 1.09000 * 109.47796 * 304.99364 * 10 9 7 33 33 H 0.97003 * 120.00063 * 185.00166 * 15 14 12 34 34 H 1.09004 * 117.49718 * 215.00346 * 20 11 10 35 35 H 1.08991 * 117.50272 * 0.02928 * 20 11 10 36 36 H 1.08999 * 117.49416 * 359.97438 * 21 11 10 37 37 H 1.08999 * 117.49478 * 144.96924 * 21 11 10 38 38 H 1.08002 * 120.04267 * 180.23344 * 22 6 5 39 39 H 1.08997 * 109.46962 * 90.00361 * 24 23 22 40 40 H 1.09004 * 109.46731 * 209.99921 * 24 23 22 41 41 H 1.09005 * 109.47024 * 329.99774 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2863 2.3739 0.0005 5 6 1.9076 3.6026 0.0055 6 6 3.3031 3.6778 -0.0004 7 6 3.9732 4.9930 -0.0004 8 8 5.1835 5.0585 -0.0950 9 7 3.2433 6.1212 0.1046 10 6 3.8953 7.4283 -0.0069 11 6 2.8738 8.5331 0.2706 12 6 2.1311 8.4182 1.5769 13 1 1.0953 8.7183 1.6373 14 6 2.7721 7.9247 2.6934 15 7 4.0052 7.4771 2.5996 16 14 1.8892 7.8921 4.3392 17 1 1.1684 6.6023 4.4887 18 1 2.8805 8.0351 5.4356 19 1 0.9169 9.0128 4.4016 20 6 3.1995 9.9397 -0.2356 21 6 2.1142 9.1097 -0.9257 22 6 4.0622 2.5049 -0.0005 23 6 3.4331 1.2797 -0.0001 24 6 4.2510 0.0139 0.0004 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2079 2.3149 0.0014 29 1 1.3173 4.5070 0.0097 30 1 2.2864 6.0676 0.2539 31 1 4.2970 7.5494 -1.0130 32 1 4.7064 7.4929 0.7184 33 1 4.4307 7.0636 3.3670 34 1 2.8764 10.7821 0.3762 35 1 4.1411 10.0780 -0.7667 36 1 2.3424 8.7022 -1.9106 37 1 1.0770 9.4055 -0.7681 38 1 5.1408 2.5590 -0.0012 39 1 4.4481 -0.2909 1.0281 40 1 3.7006 -0.7744 -0.5132 41 1 5.1957 0.1916 -0.5136 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338151989.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:35 Heat of formation + Delta-G solvation = -43.761497 kcal Electronic energy + Delta-G solvation = -22866.726033 eV Core-core repulsion = 19518.983910 eV Total energy + Delta-G solvation = -3347.742123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.46432 -40.32031 -38.59981 -37.89636 -34.94975 -34.16952 -33.68768 -31.40197 -28.57765 -28.26846 -27.58719 -26.79907 -23.96641 -22.94867 -22.83734 -21.14711 -20.83278 -19.09787 -18.67141 -17.79787 -17.35428 -16.77204 -16.71105 -16.29722 -15.85380 -15.72356 -15.40464 -14.91100 -14.72640 -14.45377 -14.36148 -14.07451 -13.61726 -13.53625 -13.38232 -12.96765 -12.93745 -12.89946 -12.61580 -12.58475 -12.28992 -12.04028 -11.96234 -11.79404 -11.55515 -10.94594 -10.77127 -10.63312 -10.15207 -9.92038 -9.68522 -9.12567 -7.92720 -6.19633 -0.05442 0.29156 1.40408 1.45405 1.53115 1.99369 2.29428 2.40782 2.53773 2.89971 3.09056 3.64419 3.70040 3.80899 3.98337 4.18224 4.24273 4.28835 4.43105 4.43985 4.52055 4.54561 4.68797 4.75992 4.77916 4.81655 4.83600 4.87225 4.96918 5.12626 5.20079 5.21873 5.29098 5.32100 5.45732 5.53821 5.61118 5.67047 5.90806 6.00206 6.35255 6.37512 6.79022 6.98623 7.45906 7.54341 8.92389 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.004578 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.978349 B = 6115.030466 C = 6565.398007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.147 3.853 4 C -0.206 4.206 5 C -0.052 4.052 6 C -0.180 4.180 7 C 0.545 3.455 8 O -0.603 6.603 9 N -0.672 5.672 10 C 0.175 3.825 11 C 0.006 3.994 12 C -0.503 4.503 13 H 0.060 0.940 14 C 0.034 3.966 15 N -0.889 5.889 16 Si 0.947 3.053 17 H -0.274 1.274 18 H -0.294 1.294 19 H -0.268 1.268 20 C -0.200 4.200 21 C -0.184 4.184 22 C -0.039 4.039 23 C -0.135 4.135 24 C -0.099 4.099 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.124 0.876 28 H 0.165 0.835 29 H 0.140 0.860 30 H 0.402 0.598 31 H 0.017 0.983 32 H 0.080 0.920 33 H 0.255 0.745 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.807 -14.671 -5.393 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.100 3.900 4 C -0.225 4.225 5 C -0.071 4.071 6 C -0.184 4.184 7 C 0.333 3.667 8 O -0.487 6.487 9 N -0.318 5.318 10 C 0.051 3.949 11 C 0.005 3.995 12 C -0.540 4.540 13 H 0.079 0.921 14 C -0.168 4.168 15 N -0.526 5.526 16 Si 0.774 3.226 17 H -0.200 1.200 18 H -0.220 1.220 19 H -0.192 1.192 20 C -0.239 4.239 21 C -0.221 4.221 22 C -0.058 4.058 23 C -0.136 4.136 24 C -0.155 4.155 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.142 0.858 28 H 0.182 0.818 29 H 0.157 0.843 30 H 0.238 0.762 31 H 0.035 0.965 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.147 0.853 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.745 -14.798 -5.341 17.535 hybrid contribution -0.614 0.672 1.090 1.420 sum -8.358 -14.125 -4.251 16.955 Atomic orbital electron populations 1.23445 0.76149 1.05929 1.02551 1.86012 1.23611 1.25843 1.87733 1.19124 0.91713 0.84992 0.94176 1.21406 1.01642 0.90869 1.08543 1.21284 0.92525 0.98921 0.94346 1.19932 0.94814 0.92796 1.10830 1.18570 0.86492 0.85073 0.76531 1.90642 1.15647 1.88241 1.54203 1.45436 1.11584 1.05188 1.69599 1.20763 0.96618 0.81017 0.96530 1.19282 0.96648 0.90592 0.92956 1.20688 0.97012 1.43702 0.92618 0.92134 1.25610 0.95085 0.94603 1.01458 1.70066 1.13176 1.38759 1.30627 0.85716 0.78216 0.78634 0.80068 1.19985 1.22030 1.19217 1.22961 0.98790 0.97080 1.05037 1.22952 0.96434 1.06047 0.96689 1.20978 1.00202 0.90169 0.94479 1.19407 0.91451 0.96146 1.06585 1.20623 0.98900 0.93023 1.02994 0.91707 0.91324 0.85818 0.81796 0.84256 0.76209 0.96537 0.90236 0.93541 0.90391 0.90680 0.89700 0.89534 0.85283 0.90725 0.90258 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -6.48 9.52 -90.37 -0.86 -7.34 16 3 C 0.15 3.64 6.67 22.63 0.15 3.80 16 4 C -0.21 -4.95 9.01 22.32 0.20 -4.75 16 5 C -0.05 -1.55 9.51 22.50 0.21 -1.34 16 6 C -0.18 -6.63 5.87 -20.08 -0.12 -6.75 16 7 C 0.54 24.77 7.75 86.72 0.67 25.45 16 8 O -0.60 -31.84 16.33 -3.95 -0.06 -31.91 16 9 N -0.67 -30.10 4.96 -466.20 -2.31 -32.41 16 10 C 0.17 8.56 4.62 86.38 0.40 8.96 16 11 C 0.01 0.27 2.04 -52.93 -0.11 0.17 16 12 C -0.50 -25.23 8.43 25.60 0.22 -25.02 16 13 H 0.06 2.98 7.82 -2.91 -0.02 2.96 16 14 C 0.03 1.76 5.31 84.65 0.45 2.21 16 15 N -0.89 -49.32 10.11 21.45 0.22 -49.10 16 16 Si 0.95 41.56 29.54 68.60 2.03 43.59 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 20 C -0.20 -8.55 9.96 30.62 0.30 -8.24 16 21 C -0.18 -7.23 9.92 30.62 0.30 -6.93 16 22 C -0.04 -1.31 9.23 22.50 0.21 -1.10 16 23 C -0.14 -3.71 5.89 -19.81 -0.12 -3.83 16 24 C -0.10 -2.10 9.78 71.24 0.70 -1.40 16 25 H 0.06 0.69 7.65 -2.39 -0.02 0.67 16 26 H 0.07 0.67 7.65 -2.38 -0.02 0.65 16 27 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.16 2.76 6.28 -2.91 -0.02 2.74 16 29 H 0.14 3.85 6.46 -2.91 -0.02 3.83 16 30 H 0.40 16.59 6.20 -92.71 -0.57 16.01 16 31 H 0.02 0.79 8.09 -2.39 -0.02 0.77 16 32 H 0.08 4.57 5.89 -2.39 -0.01 4.56 16 33 H 0.25 14.07 8.32 -92.71 -0.77 13.29 16 34 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 35 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.08 3.05 8.14 -2.39 -0.02 3.04 16 37 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.13 4.48 7.65 -2.91 -0.02 4.46 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 1.50 7.52 -2.38 -0.02 1.49 16 41 H 0.07 1.44 8.08 -2.38 -0.02 1.42 16 Total: -1.00 -65.20 342.06 4.06 -61.14 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.47 Total: 33.54 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 4.59 Total: -17.50 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -2.10 Total: -81.51 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -0.92 Total: -39.25 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -65.20 4.06 -61.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338151989.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.376 kcal (2) G-P(sol) polarization free energy of solvation -65.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds