Wall clock time and date at job start Tue Mar 31 2020 06:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38633 * 119.78536 * 2 1 4 4 C 1.37718 * 120.36112 * 179.97438 * 3 2 1 5 5 C 1.39798 * 119.92400 * 359.97436 * 4 3 2 6 6 C 1.47288 * 120.21265 * 180.02562 * 5 4 3 7 7 O 1.21529 * 119.99907 * 174.38045 * 6 5 4 8 8 O 1.34766 * 120.00406 * 354.38169 * 6 5 4 9 9 C 1.45200 * 117.00507 * 185.11883 * 8 6 5 10 10 C 1.52994 * 109.47589 * 184.86430 * 9 8 6 11 11 C 1.50700 * 115.54926 * 305.91995 * 10 9 8 12 12 H 1.08002 * 120.00149 * 144.08782 * 11 10 9 13 13 C 1.37872 * 120.00225 * 324.08828 * 11 10 9 14 14 N 1.31516 * 119.99929 * 3.13056 * 13 11 10 15 15 Si 1.86797 * 120.00223 * 183.12645 * 13 11 10 16 16 H 1.48498 * 109.47070 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47033 * 119.99971 * 15 13 11 18 18 H 1.48497 * 109.47458 * 239.99918 * 15 13 11 19 19 C 1.52998 * 117.49964 * 160.24886 * 10 9 8 20 20 C 1.53004 * 117.49955 * 91.59024 * 10 9 8 21 21 C 1.40396 * 119.57091 * 0.02562 * 5 4 3 22 22 N 1.38829 * 120.17979 * 179.97438 * 21 5 4 23 23 C 1.37946 * 119.78189 * 179.72461 * 2 1 3 24 24 C 1.50704 * 119.96351 * 359.97438 * 23 2 1 25 25 H 1.09009 * 109.46744 * 89.99750 * 1 2 3 26 26 H 1.09006 * 109.46990 * 330.00362 * 1 2 3 27 27 H 1.08994 * 109.47205 * 209.99683 * 1 2 3 28 28 H 1.07999 * 119.81658 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.03596 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47015 * 304.87009 * 9 8 6 31 31 H 1.09007 * 109.46678 * 64.86352 * 9 8 6 32 32 H 0.97004 * 120.00026 * 184.99994 * 14 13 11 33 33 H 1.09000 * 117.49991 * 0.02562 * 19 10 9 34 34 H 1.09006 * 117.49529 * 145.01853 * 19 10 9 35 35 H 1.08998 * 117.49697 * 214.98189 * 20 10 9 36 36 H 1.08998 * 117.49553 * 359.97438 * 20 10 9 37 37 H 0.97000 * 120.00100 * 7.14414 * 22 21 5 38 38 H 0.97011 * 120.00100 * 187.14243 * 22 21 5 39 39 H 1.09003 * 109.46764 * 90.00625 * 24 23 2 40 40 H 1.09000 * 109.46965 * 209.99682 * 24 23 2 41 41 H 1.09000 * 109.47328 * 330.00346 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2032 0.0000 4 6 3.5728 1.2170 0.0005 5 6 4.2823 0.0125 0.0016 6 6 5.7551 0.0199 0.0028 7 8 6.3679 -1.0245 0.1068 8 8 6.4233 1.1846 -0.1115 9 6 7.8693 1.1075 -0.2180 10 6 8.4570 2.5201 -0.2167 11 6 7.8934 3.4595 -1.2515 12 1 7.7635 4.5058 -1.0174 13 6 7.5435 2.9833 -2.4972 14 7 7.6436 1.6990 -2.7622 15 14 6.9271 4.1622 -3.8085 16 1 6.9078 5.5432 -3.2630 17 1 7.8298 4.1083 -4.9864 18 1 5.5542 3.7723 -4.2189 19 6 9.9370 2.6692 0.1414 20 6 8.8604 3.1161 1.1335 21 6 3.5818 -1.2043 0.0016 22 7 4.2737 -2.4079 0.0021 23 6 2.1922 -1.1973 0.0058 24 6 1.4328 -2.4990 0.0126 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 0.8901 0.5138 27 1 -0.3633 -0.8900 0.5138 28 1 1.6492 2.1347 -0.0004 29 1 4.1039 2.1574 0.0009 30 1 8.2667 0.5478 0.6288 31 1 8.1388 0.6027 -1.1458 32 1 7.4673 1.3736 -3.6588 33 1 10.4922 1.7609 0.3756 34 1 10.5029 3.4470 -0.3714 35 1 8.7185 4.1878 1.2731 36 1 8.7068 2.5020 2.0208 37 1 5.2380 -2.4130 0.1070 38 1 3.7927 -3.2439 -0.1023 39 1 1.2495 -2.8180 -1.0135 40 1 2.0188 -3.2587 0.5300 41 1 0.4812 -2.3619 0.5261 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346767053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:48 Heat of formation + Delta-G solvation = -36.839626 kcal Electronic energy + Delta-G solvation = -23195.984380 eV Core-core repulsion = 19848.542412 eV Total energy + Delta-G solvation = -3347.441968 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.12957 -38.69736 -36.71797 -35.29196 -34.28545 -33.26671 -32.15507 -29.80655 -27.83196 -26.72787 -25.97354 -25.23917 -22.21474 -21.24191 -21.19896 -19.97772 -19.14641 -17.16749 -16.69955 -16.43668 -16.05331 -15.64153 -15.26620 -14.61243 -14.30668 -14.20765 -13.96451 -13.62606 -13.28266 -12.98701 -12.90624 -12.57328 -12.25814 -11.97238 -11.89130 -11.77704 -11.43444 -11.23874 -11.04186 -10.86353 -10.76611 -10.48260 -10.33280 -10.28801 -9.87309 -9.41077 -9.36712 -8.94413 -8.74059 -8.41346 -8.22015 -7.29744 -5.98519 -4.10252 1.19048 1.84818 3.18306 3.27584 3.36624 3.39787 3.69786 4.14761 4.22260 4.37718 4.84927 4.96867 5.05164 5.13780 5.22480 5.41678 5.47412 5.53415 5.63991 5.71055 5.77185 5.82691 5.86736 6.04793 6.06644 6.23258 6.33979 6.41751 6.51449 6.64792 6.66705 6.68092 6.81007 6.84116 6.99078 7.10549 7.24593 7.48020 7.51677 7.72471 7.92330 8.21734 8.34206 8.74213 8.89264 9.52162 10.98023 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016939 B = 0.005119 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.597030 B = 5468.890250 C = 6229.793162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.012 4.012 3 C -0.199 4.199 4 C -0.007 4.007 5 C -0.208 4.208 6 C 0.517 3.483 7 O -0.547 6.547 8 O -0.310 6.310 9 C 0.120 3.880 10 C 0.045 3.955 11 C -0.478 4.478 12 H 0.062 0.938 13 C 0.074 3.926 14 N -0.883 5.883 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.282 1.282 19 C -0.195 4.195 20 C -0.209 4.209 21 C 0.285 3.715 22 N -0.857 5.857 23 C -0.194 4.194 24 C -0.102 4.102 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.122 0.878 29 H 0.141 0.859 30 H 0.021 0.979 31 H 0.116 0.884 32 H 0.261 0.739 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.417 0.583 38 H 0.389 0.611 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.202 -6.239 4.960 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.013 4.013 3 C -0.219 4.219 4 C -0.025 4.025 5 C -0.215 4.215 6 C 0.365 3.635 7 O -0.442 6.442 8 O -0.223 6.223 9 C 0.047 3.953 10 C 0.044 3.956 11 C -0.515 4.515 12 H 0.080 0.920 13 C -0.129 4.129 14 N -0.521 5.521 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.208 1.208 19 C -0.233 4.233 20 C -0.247 4.247 21 C 0.173 3.827 22 N -0.406 5.406 23 C -0.199 4.199 24 C -0.159 4.159 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.140 0.860 29 H 0.159 0.841 30 H 0.040 0.960 31 H 0.134 0.866 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.260 0.740 38 H 0.218 0.782 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.986 -6.606 4.863 14.524 hybrid contribution 0.168 0.215 -0.758 0.805 sum -11.818 -6.391 4.105 14.049 Atomic orbital electron populations 1.20924 0.91506 1.02762 1.02420 1.19650 0.95497 0.92212 0.93978 1.20683 0.93846 0.97220 1.10113 1.21340 0.93842 0.97459 0.89890 1.18659 0.90080 0.93139 1.19593 1.20837 0.88110 0.82524 0.72014 1.90345 1.69934 1.33480 1.50458 1.86539 1.24355 1.30761 1.80644 1.22896 0.73727 0.97436 1.01229 1.18947 0.91626 0.92652 0.92331 1.20493 1.41041 0.93826 0.96162 0.91958 1.24938 0.94328 0.94996 0.98615 1.69792 1.49449 1.12431 1.20423 0.86459 0.78601 0.81103 0.81418 1.19670 1.20998 1.20814 1.22983 0.94021 1.01410 1.04901 1.22951 1.07359 1.00020 0.94321 1.17483 0.90376 0.85785 0.89020 1.43495 1.13063 1.04527 1.79495 1.19031 0.90913 0.95623 1.14309 1.20603 0.99655 0.93949 1.01700 0.90903 0.91413 0.91200 0.85955 0.84150 0.96039 0.86617 0.92886 0.91464 0.89797 0.90308 0.91332 0.74014 0.78244 0.91897 0.92410 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.59 36.00 0.35 -0.77 16 2 C -0.01 -0.16 5.88 -104.58 -0.62 -0.78 16 3 C -0.20 -2.90 9.67 -39.63 -0.38 -3.28 16 4 C -0.01 -0.12 9.61 -39.19 -0.38 -0.49 16 5 C -0.21 -4.03 5.89 -104.82 -0.62 -4.65 16 6 C 0.52 11.66 7.87 34.41 0.27 11.93 16 7 O -0.55 -12.55 13.35 -19.29 -0.26 -12.81 16 8 O -0.31 -7.65 9.06 -40.67 -0.37 -8.02 16 9 C 0.12 3.03 4.46 37.15 0.17 3.19 16 10 C 0.04 1.13 2.19 -155.66 -0.34 0.78 16 11 C -0.48 -12.92 8.78 -34.44 -0.30 -13.22 16 12 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 13 C 0.07 1.99 5.35 -17.82 -0.10 1.89 16 14 N -0.88 -24.53 10.26 55.43 0.57 -23.96 16 15 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.20 -4.36 9.96 -26.69 -0.27 -4.62 16 20 C -0.21 -4.59 9.92 -26.69 -0.26 -4.85 16 21 C 0.28 4.74 6.74 -83.61 -0.56 4.18 16 22 N -0.86 -12.94 8.78 32.55 0.29 -12.65 16 23 C -0.19 -2.68 5.89 -104.46 -0.62 -3.30 16 24 C -0.10 -1.03 9.09 36.01 0.33 -0.70 16 25 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 26 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.07 0.55 5.90 -51.93 -0.31 0.25 16 28 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.14 2.56 7.62 -52.48 -0.40 2.16 16 30 H 0.02 0.51 7.92 -51.93 -0.41 0.10 16 31 H 0.12 3.19 5.93 -51.93 -0.31 2.89 16 32 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 35 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.42 7.15 5.36 -40.92 -0.22 6.93 16 38 H 0.39 4.52 6.94 -40.82 -0.28 4.24 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.53 6.68 -51.93 -0.35 0.18 16 41 H 0.07 0.58 5.91 -51.93 -0.31 0.27 16 LS Contribution 336.60 15.07 5.07 5.07 Total: -1.00 -29.68 336.60 -8.56 -38.24 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -5.51 Total: 12.82 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -3.33 Total: -14.69 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.85 Total: -36.61 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.63 Total: -20.83 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.68 -8.56 -38.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346767053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.399 kcal (2) G-P(sol) polarization free energy of solvation -29.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds