Wall clock time and date at job start Tue Mar 31 2020 06:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38633 * 119.78536 * 2 1 4 4 C 1.37718 * 120.36112 * 179.97438 * 3 2 1 5 5 C 1.39798 * 119.92400 * 359.97436 * 4 3 2 6 6 C 1.47288 * 120.21265 * 180.02562 * 5 4 3 7 7 O 1.21529 * 119.99907 * 174.38045 * 6 5 4 8 8 O 1.34766 * 120.00406 * 354.38169 * 6 5 4 9 9 C 1.45200 * 117.00507 * 185.11883 * 8 6 5 10 10 C 1.52994 * 109.47589 * 184.86430 * 9 8 6 11 11 C 1.50700 * 115.54926 * 305.91995 * 10 9 8 12 12 H 1.08002 * 120.00149 * 144.08782 * 11 10 9 13 13 C 1.37872 * 120.00225 * 324.08828 * 11 10 9 14 14 N 1.31516 * 119.99929 * 3.13056 * 13 11 10 15 15 Si 1.86797 * 120.00223 * 183.12645 * 13 11 10 16 16 H 1.48498 * 109.47070 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47033 * 119.99971 * 15 13 11 18 18 H 1.48497 * 109.47458 * 239.99918 * 15 13 11 19 19 C 1.52998 * 117.49964 * 160.24886 * 10 9 8 20 20 C 1.53004 * 117.49955 * 91.59024 * 10 9 8 21 21 C 1.40396 * 119.57091 * 0.02562 * 5 4 3 22 22 N 1.38829 * 120.17979 * 179.97438 * 21 5 4 23 23 C 1.37946 * 119.78189 * 179.72461 * 2 1 3 24 24 C 1.50704 * 119.96351 * 359.97438 * 23 2 1 25 25 H 1.09009 * 109.46744 * 89.99750 * 1 2 3 26 26 H 1.09006 * 109.46990 * 330.00362 * 1 2 3 27 27 H 1.08994 * 109.47205 * 209.99683 * 1 2 3 28 28 H 1.07999 * 119.81658 * 359.97438 * 3 2 1 29 29 H 1.08003 * 120.03596 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47015 * 304.87009 * 9 8 6 31 31 H 1.09007 * 109.46678 * 64.86352 * 9 8 6 32 32 H 0.97004 * 120.00026 * 184.99994 * 14 13 11 33 33 H 1.09000 * 117.49991 * 0.02562 * 19 10 9 34 34 H 1.09006 * 117.49529 * 145.01853 * 19 10 9 35 35 H 1.08998 * 117.49697 * 214.98189 * 20 10 9 36 36 H 1.08998 * 117.49553 * 359.97438 * 20 10 9 37 37 H 0.97000 * 120.00100 * 7.14414 * 22 21 5 38 38 H 0.97011 * 120.00100 * 187.14243 * 22 21 5 39 39 H 1.09003 * 109.46764 * 90.00625 * 24 23 2 40 40 H 1.09000 * 109.46965 * 209.99682 * 24 23 2 41 41 H 1.09000 * 109.47328 * 330.00346 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2032 0.0000 4 6 3.5728 1.2170 0.0005 5 6 4.2823 0.0125 0.0016 6 6 5.7551 0.0199 0.0028 7 8 6.3679 -1.0245 0.1068 8 8 6.4233 1.1846 -0.1115 9 6 7.8693 1.1075 -0.2180 10 6 8.4570 2.5201 -0.2167 11 6 7.8934 3.4595 -1.2515 12 1 7.7635 4.5058 -1.0174 13 6 7.5435 2.9833 -2.4972 14 7 7.6436 1.6990 -2.7622 15 14 6.9271 4.1622 -3.8085 16 1 6.9078 5.5432 -3.2630 17 1 7.8298 4.1083 -4.9864 18 1 5.5542 3.7723 -4.2189 19 6 9.9370 2.6692 0.1414 20 6 8.8604 3.1161 1.1335 21 6 3.5818 -1.2043 0.0016 22 7 4.2737 -2.4079 0.0021 23 6 2.1922 -1.1973 0.0058 24 6 1.4328 -2.4990 0.0126 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3633 0.8901 0.5138 27 1 -0.3633 -0.8900 0.5138 28 1 1.6492 2.1347 -0.0004 29 1 4.1039 2.1574 0.0009 30 1 8.2667 0.5478 0.6288 31 1 8.1388 0.6027 -1.1458 32 1 7.4673 1.3736 -3.6588 33 1 10.4922 1.7609 0.3756 34 1 10.5029 3.4470 -0.3714 35 1 8.7185 4.1878 1.2731 36 1 8.7068 2.5020 2.0208 37 1 5.2380 -2.4130 0.1070 38 1 3.7927 -3.2439 -0.1023 39 1 1.2495 -2.8180 -1.0135 40 1 2.0188 -3.2587 0.5300 41 1 0.4812 -2.3619 0.5261 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346767053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:48 Heat of formation + Delta-G solvation = -52.399260 kcal Electronic energy + Delta-G solvation = -23196.659097 eV Core-core repulsion = 19848.542412 eV Total energy + Delta-G solvation = -3348.116685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.58981 -40.18053 -38.52402 -36.94431 -35.64299 -34.40683 -34.19090 -30.84636 -29.15314 -28.12323 -27.56160 -26.99859 -23.60096 -23.00789 -22.37275 -21.44113 -21.09980 -18.58007 -18.51274 -17.91014 -17.49119 -17.18259 -17.03250 -16.48330 -15.72075 -15.33952 -15.24360 -15.05958 -14.76822 -14.45057 -13.99842 -13.70164 -13.63407 -13.49161 -13.28718 -12.99441 -12.93966 -12.81736 -12.70995 -12.32465 -12.26504 -12.15163 -11.93909 -11.69252 -11.47151 -11.29319 -11.13445 -10.88732 -10.68957 -10.17555 -9.58489 -8.51448 -8.01652 -6.19891 -0.11826 0.64012 1.40191 1.43313 1.54044 1.64112 2.06667 2.42100 2.87108 2.97601 3.04619 3.55228 3.79651 3.91148 4.04826 4.20969 4.25441 4.31082 4.36989 4.52178 4.56870 4.68557 4.78580 4.79286 4.88459 4.88688 4.93219 4.99289 5.00323 5.16521 5.19220 5.26386 5.39721 5.42137 5.48281 5.49888 5.68787 5.76776 5.83342 6.01150 6.31777 6.49556 6.77953 6.94231 7.04543 7.44242 8.92751 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016939 B = 0.005119 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.597030 B = 5468.890250 C = 6229.793162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.005 4.005 3 C -0.196 4.196 4 C -0.028 4.028 5 C -0.247 4.247 6 C 0.505 3.495 7 O -0.564 6.564 8 O -0.327 6.327 9 C 0.130 3.870 10 C 0.004 3.996 11 C -0.493 4.493 12 H 0.057 0.943 13 C 0.029 3.971 14 N -0.906 5.906 15 Si 0.955 3.045 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.284 1.284 19 C -0.184 4.184 20 C -0.189 4.189 21 C 0.274 3.726 22 N -0.853 5.853 23 C -0.191 4.191 24 C -0.102 4.102 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.147 0.853 29 H 0.120 0.880 30 H 0.024 0.976 31 H 0.087 0.913 32 H 0.257 0.743 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.408 0.592 38 H 0.406 0.594 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.922 -6.462 5.284 17.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.006 4.006 3 C -0.216 4.216 4 C -0.047 4.047 5 C -0.253 4.253 6 C 0.355 3.645 7 O -0.460 6.460 8 O -0.241 6.241 9 C 0.057 3.943 10 C 0.004 3.996 11 C -0.530 4.530 12 H 0.075 0.925 13 C -0.170 4.170 14 N -0.545 5.545 15 Si 0.780 3.220 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.210 1.210 19 C -0.222 4.222 20 C -0.226 4.226 21 C 0.162 3.838 22 N -0.401 5.401 23 C -0.196 4.196 24 C -0.159 4.159 25 H 0.106 0.894 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.165 0.835 29 H 0.138 0.862 30 H 0.042 0.958 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.248 0.752 38 H 0.237 0.763 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.722 -6.839 5.197 17.045 hybrid contribution 0.918 0.228 -0.805 1.242 sum -13.804 -6.611 4.392 15.923 Atomic orbital electron populations 1.21037 0.87956 1.04589 1.03799 1.20184 0.97925 0.91201 0.91314 1.20992 0.92523 0.99201 1.08839 1.21279 0.95347 0.96189 0.91857 1.18709 0.88153 0.95138 1.23326 1.21558 0.89586 0.81798 0.71525 1.90317 1.70658 1.33566 1.51417 1.86540 1.23986 1.32241 1.81312 1.22610 0.74557 0.97480 0.99680 1.19092 0.93641 0.92641 0.94229 1.20711 1.41397 0.93866 0.97041 0.92513 1.25628 0.94634 0.96316 1.00456 1.69968 1.50411 1.13747 1.20380 0.85553 0.77799 0.79535 0.79079 1.18871 1.20501 1.21028 1.22994 0.92833 1.02021 1.04329 1.22962 1.05641 1.00538 0.93488 1.17747 0.91701 0.85201 0.89189 1.43418 1.12604 1.05054 1.79029 1.19528 0.89747 0.97903 1.12408 1.20724 1.00309 0.91833 1.02998 0.89445 0.89972 0.89123 0.83545 0.86170 0.95792 0.89566 0.93322 0.90059 0.89522 0.89525 0.89871 0.75220 0.76286 0.90626 0.91652 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 9.59 71.24 0.68 -0.95 16 2 C -0.01 -0.12 5.88 -19.84 -0.12 -0.24 16 3 C -0.20 -5.46 9.67 22.24 0.22 -5.24 16 4 C -0.03 -1.02 9.61 22.52 0.22 -0.80 16 5 C -0.25 -9.91 5.89 -19.99 -0.12 -10.03 16 6 C 0.50 24.08 7.87 70.20 0.55 24.63 16 7 O -0.56 -27.26 13.35 19.74 0.26 -27.00 16 8 O -0.33 -17.05 9.06 -56.77 -0.51 -17.57 16 9 C 0.13 6.85 4.46 71.98 0.32 7.17 16 10 C 0.00 0.22 2.19 -52.93 -0.12 0.11 16 11 C -0.49 -27.22 8.78 25.60 0.22 -26.99 16 12 H 0.06 3.10 7.82 -2.91 -0.02 3.08 16 13 C 0.03 1.61 5.35 84.65 0.45 2.06 16 14 N -0.91 -52.21 10.26 21.45 0.22 -51.99 16 15 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 16 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 C -0.18 -8.16 9.96 30.62 0.30 -7.86 16 20 C -0.19 -8.20 9.92 30.62 0.30 -7.90 16 21 C 0.27 9.05 6.74 38.73 0.26 9.32 16 22 N -0.85 -25.67 8.78 -50.93 -0.45 -26.12 16 23 C -0.19 -4.83 5.89 -19.76 -0.12 -4.95 16 24 C -0.10 -1.65 9.09 71.24 0.65 -1.00 16 25 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.08 0.96 8.08 -2.38 -0.02 0.94 16 27 H 0.09 0.93 5.90 -2.39 -0.01 0.91 16 28 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.12 4.71 7.62 -2.91 -0.02 4.69 16 30 H 0.02 1.20 7.92 -2.38 -0.02 1.18 16 31 H 0.09 5.03 5.93 -2.38 -0.01 5.02 16 32 H 0.26 14.32 8.32 -92.71 -0.77 13.55 16 33 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 34 H 0.09 3.76 8.14 -2.38 -0.02 3.74 16 35 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 36 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.41 14.40 5.36 -94.32 -0.51 13.89 16 38 H 0.41 8.95 6.94 -92.70 -0.64 8.31 16 39 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 0.97 6.68 -2.39 -0.02 0.96 16 41 H 0.09 1.09 5.91 -2.39 -0.01 1.07 16 Total: -1.00 -66.87 336.60 5.18 -61.69 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: -0.08 Total: 37.76 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 3.72 Total: -22.67 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -0.23 Total: -78.11 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -0.25 Total: -44.56 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -66.87 5.18 -61.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346767053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.287 kcal (2) G-P(sol) polarization free energy of solvation -66.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds