Wall clock time and date at job start Tue Mar 31 2020 07:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47713 * 38.38930 * 3 2 1 5 5 C 1.37095 * 119.99437 * 278.99813 * 4 3 2 6 6 H 1.08001 * 120.00385 * 40.51489 * 5 4 3 7 7 C 1.38950 * 120.00091 * 220.50665 * 5 4 3 8 8 N 1.31413 * 119.99538 * 1.80476 * 7 5 4 9 9 Si 1.86801 * 120.00339 * 181.80227 * 7 5 4 10 10 H 1.48501 * 109.46797 * 90.00226 * 9 7 5 11 11 H 1.48501 * 109.46997 * 209.99976 * 9 7 5 12 12 H 1.48494 * 109.46884 * 330.00285 * 9 7 5 13 13 C 1.34769 * 120.00075 * 98.99205 * 4 3 2 14 14 O 1.21298 * 119.99703 * 184.85583 * 13 4 3 15 15 C 1.50698 * 120.00491 * 4.86361 * 13 4 3 16 16 C 1.55929 * 115.85090 * 56.74774 * 15 13 4 17 17 C 1.54605 * 104.58442 * 159.96112 * 16 15 13 18 18 C 1.56177 * 104.49971 * 0.31128 * 17 16 15 19 19 H 1.09007 * 116.19844 * 199.17195 * 18 17 16 20 20 C 1.55963 * 104.25437 * 69.21305 * 18 17 16 21 21 C 1.53409 * 104.96982 * 289.04475 * 20 18 17 22 22 O 1.20766 * 127.85216 * 180.38719 * 21 20 18 23 23 C 1.56925 * 116.14697 * 174.62663 * 15 13 4 24 24 C 1.52999 * 112.08827 * 296.86029 * 23 15 13 25 25 C 1.53001 * 112.08435 * 63.46528 * 23 15 13 26 26 H 4.40645 * 5.51440 * 180.02562 * 4 1 2 27 27 H 1.08999 * 109.47418 * 278.37971 * 3 2 1 28 28 H 1.09006 * 109.46850 * 158.39008 * 3 2 1 29 29 H 0.97002 * 119.99646 * 184.67224 * 8 7 5 30 30 H 1.09001 * 110.41228 * 278.74462 * 16 15 13 31 31 H 1.09006 * 110.40984 * 41.06753 * 16 15 13 32 32 H 1.09006 * 110.43230 * 119.08130 * 17 16 15 33 33 H 1.08998 * 110.43961 * 241.46077 * 17 16 15 34 34 H 1.08999 * 110.35516 * 48.57347 * 20 18 17 35 35 H 1.09000 * 110.36151 * 170.77312 * 20 18 17 36 36 H 1.08999 * 109.47275 * 186.08231 * 24 23 15 37 37 H 1.09006 * 109.47244 * 66.08156 * 24 23 15 38 38 H 1.09002 * 109.47191 * 306.08779 * 24 23 15 39 39 H 1.09003 * 109.47285 * 293.91503 * 25 23 15 40 40 H 1.09001 * 109.47466 * 53.91243 * 25 23 15 41 41 H 1.09003 * 109.47137 * 173.91756 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.0817 -0.8577 5 6 3.1889 -2.3649 -0.3782 6 1 2.3866 -2.7461 0.2361 7 6 4.2758 -3.1752 -0.6828 8 7 5.2687 -2.7002 -1.4008 9 14 4.3258 -4.9397 -0.0715 10 1 3.6959 -5.8305 -1.0790 11 1 5.7371 -5.3508 0.1391 12 1 3.5841 -5.0404 1.2109 13 6 3.5314 -0.8159 -2.1180 14 8 3.8527 -1.7229 -2.8567 15 6 3.5760 0.6079 -2.6096 16 6 4.4579 1.5875 -1.7766 17 6 4.7434 2.7659 -2.7358 18 6 3.9978 2.3861 -4.0545 19 1 4.3218 2.9045 -4.9570 20 6 2.4862 2.4966 -3.6865 21 6 2.2178 1.3090 -2.7531 22 8 1.1746 0.9990 -2.2296 23 6 4.1738 0.8259 -4.0440 24 6 5.6447 0.4123 -4.1233 25 6 3.3342 0.1449 -5.1267 26 1 -1.0498 -0.0002 -0.0004 27 1 3.0094 -0.1489 1.0167 28 1 3.0088 0.9563 -0.3785 29 1 5.9947 -3.2841 -1.6707 30 1 3.9142 1.9353 -0.8982 31 1 5.3880 1.1027 -1.4796 32 1 4.3448 3.6945 -2.3270 33 1 5.8143 2.8592 -2.9160 34 1 2.2873 3.4413 -3.1805 35 1 1.8706 2.4096 -4.5818 36 1 6.0454 0.6803 -5.1009 37 1 5.7275 -0.6651 -3.9796 38 1 6.2092 0.9269 -3.3457 39 1 3.3829 -0.9364 -4.9979 40 1 2.2984 0.4743 -5.0442 41 1 3.7231 0.4115 -6.1095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347033146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:14 Heat of formation + Delta-G solvation = 31.392726 kcal Electronic energy + Delta-G solvation = -25313.967124 eV Core-core repulsion = 21969.483933 eV Total energy + Delta-G solvation = -3344.483191 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25227 -37.59787 -37.39740 -34.50649 -32.37496 -31.58773 -30.97033 -30.19384 -28.62891 -26.26362 -26.00547 -24.47960 -23.49164 -21.11185 -20.50359 -18.72777 -17.85473 -17.57696 -16.52386 -15.82892 -15.44770 -15.21932 -14.74525 -14.22485 -14.03257 -13.66847 -13.50662 -13.22256 -12.98344 -12.63802 -12.51309 -12.15735 -12.00299 -11.78224 -11.64358 -11.34838 -11.19105 -11.12279 -10.95355 -10.89394 -10.71414 -10.48094 -10.18994 -10.16310 -10.05830 -9.73537 -9.57391 -9.11006 -8.83413 -8.69266 -7.82016 -7.06156 -5.89414 -3.82319 2.39262 3.34300 3.39314 3.40589 3.63512 3.80709 4.07670 4.37114 4.51928 4.60489 4.81688 4.86847 5.10466 5.23537 5.28834 5.35762 5.40644 5.47417 5.57630 5.65330 5.74150 5.80811 5.88578 5.91883 6.00154 6.07943 6.15617 6.16579 6.29339 6.36870 6.42322 6.43315 6.46116 6.58247 6.60113 6.78593 6.91510 7.08638 7.68839 7.97739 8.32594 8.57183 9.13894 9.24916 9.73393 10.43470 11.05930 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.008197 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.574667 B = 3415.018506 C = 4309.803363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.153 4.153 3 C 0.194 3.806 4 N -0.449 5.449 5 C -0.328 4.328 6 H 0.077 0.923 7 C 0.047 3.953 8 N -0.817 5.817 9 Si 0.913 3.087 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.502 3.498 14 O -0.494 6.494 15 C -0.131 4.131 16 C -0.111 4.111 17 C -0.121 4.121 18 C -0.095 4.095 19 H 0.107 0.893 20 C -0.172 4.172 21 C 0.364 3.636 22 O -0.414 6.414 23 C -0.030 4.030 24 C -0.133 4.133 25 C -0.141 4.141 26 H 0.202 0.798 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.259 0.741 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.043 0.957 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.228 12.390 -3.660 12.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.155 4.155 3 C 0.071 3.929 4 N -0.171 5.171 5 C -0.455 4.455 6 H 0.095 0.905 7 C -0.162 4.162 8 N -0.452 5.452 9 Si 0.741 3.259 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.288 3.712 14 O -0.368 6.368 15 C -0.135 4.135 16 C -0.148 4.148 17 C -0.159 4.159 18 C -0.113 4.113 19 H 0.125 0.875 20 C -0.210 4.210 21 C 0.237 3.763 22 O -0.284 6.284 23 C -0.031 4.031 24 C -0.189 4.189 25 C -0.198 4.198 26 H 0.219 0.781 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.378 11.693 -3.795 12.299 hybrid contribution -0.206 -0.755 0.302 0.839 sum -0.584 10.938 -3.493 11.497 Atomic orbital electron populations 1.24388 0.95452 1.02166 1.03240 1.23777 0.95042 0.98752 0.97896 1.18854 0.83809 0.93230 0.97024 1.43114 1.59097 1.05992 1.08869 1.19080 1.03929 0.88396 1.34117 0.90519 1.25235 0.94608 0.99449 0.96897 1.70028 1.08462 1.35252 1.31503 0.86158 0.77029 0.83813 0.78900 1.20779 1.21238 1.19905 1.18589 0.83984 0.86483 0.82189 1.90494 1.47357 1.45560 1.53388 1.23819 0.95321 0.96582 0.97818 1.22709 1.00355 0.94786 0.96985 1.22753 1.00686 0.97499 0.94953 1.23670 0.93220 0.96690 0.97712 0.87529 1.23357 0.98168 0.98885 1.00581 1.25728 0.88878 0.84492 0.77243 1.90550 1.30880 1.65955 1.41022 1.22130 0.96429 0.92445 0.92068 1.21682 0.93042 1.04200 1.00022 1.21779 0.97984 1.03136 0.96878 0.78072 0.90073 0.89591 0.93023 0.91107 0.89436 0.91741 0.91036 0.89067 0.89101 0.93657 0.89908 0.92646 0.90126 0.93774 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.65 18.21 29.55 0.54 -4.12 16 2 C -0.15 -3.32 10.77 -37.12 -0.40 -3.72 16 3 C 0.19 4.21 5.27 -6.83 -0.04 4.17 16 4 N -0.45 -11.57 2.56 -117.93 -0.30 -11.87 16 5 C -0.33 -9.23 9.26 -14.93 -0.14 -9.36 16 6 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 7 C 0.05 1.33 4.91 -17.47 -0.09 1.24 16 8 N -0.82 -23.46 10.33 55.50 0.57 -22.88 16 9 Si 0.91 21.92 29.56 -169.99 -5.02 16.89 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.50 12.60 5.94 -10.99 -0.07 12.53 16 14 O -0.49 -14.06 10.88 5.54 0.06 -14.00 16 15 C -0.13 -2.51 0.31 -151.70 -0.05 -2.55 16 16 C -0.11 -1.78 4.41 -24.32 -0.11 -1.89 16 17 C -0.12 -1.47 5.56 -24.18 -0.13 -1.61 16 18 C -0.09 -1.18 4.58 -85.16 -0.39 -1.57 16 19 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 20 C -0.17 -2.27 5.50 -24.93 -0.14 -2.41 16 21 C 0.36 6.61 5.07 -26.25 -0.13 6.47 16 22 O -0.41 -8.70 13.08 5.99 0.08 -8.63 16 23 C -0.03 -0.49 0.57 -150.21 -0.09 -0.58 16 24 C -0.13 -2.22 8.43 37.16 0.31 -1.90 16 25 C -0.14 -2.37 8.43 37.16 0.31 -2.06 16 26 H 0.20 3.22 7.80 -54.10 -0.42 2.80 16 27 H 0.08 1.66 8.11 -51.93 -0.42 1.24 16 28 H 0.09 1.66 2.90 -51.93 -0.15 1.51 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.07 1.08 5.60 -51.93 -0.29 0.79 16 31 H 0.09 1.53 7.43 -51.93 -0.39 1.15 16 32 H 0.06 0.66 7.85 -51.93 -0.41 0.26 16 33 H 0.07 0.79 7.35 -51.93 -0.38 0.41 16 34 H 0.09 1.03 7.84 -51.93 -0.41 0.62 16 35 H 0.09 1.11 7.39 -51.93 -0.38 0.73 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.74 7.05 -51.93 -0.37 1.37 16 38 H 0.05 0.88 5.36 -51.93 -0.28 0.60 16 39 H 0.08 1.65 6.72 -51.93 -0.35 1.30 16 40 H 0.04 0.72 5.83 -51.93 -0.30 0.42 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -33.11 312.74 -5.86 -38.97 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.36 Total: 4.14 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -0.59 Total: -7.34 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.27 Total: -34.76 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: 0.14 Total: -22.62 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.11 -5.86 -38.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347033146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.360 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds