Wall clock time and date at job start Tue Mar 31 2020 07:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99837 * 2 1 4 4 C 1.52998 * 115.55264 * 325.66376 * 3 2 1 5 5 C 1.53005 * 117.51936 * 111.37348 * 3 2 1 6 6 C 1.53001 * 117.49669 * 180.02562 * 3 2 1 7 7 H 1.08999 * 117.50393 * 144.97380 * 6 3 2 8 8 N 1.46494 * 117.50173 * 359.97052 * 6 3 2 9 9 C 1.34778 * 120.00360 * 155.00441 * 8 6 3 10 10 O 1.21280 * 119.99814 * 359.97438 * 9 8 6 11 11 C 1.50701 * 120.00025 * 180.02562 * 9 8 6 12 12 H 1.08992 * 109.47532 * 299.99950 * 11 9 8 13 13 C 1.50700 * 109.47082 * 60.00313 * 11 9 8 14 14 H 1.07998 * 120.00103 * 26.76569 * 13 11 9 15 15 C 1.37875 * 119.99716 * 206.77044 * 13 11 9 16 16 N 1.31514 * 120.00256 * 353.46210 * 15 13 11 17 17 Si 1.86802 * 119.99918 * 173.45833 * 15 13 11 18 18 H 1.48503 * 109.47289 * 180.02562 * 17 15 13 19 19 H 1.48498 * 109.47015 * 60.00090 * 17 15 13 20 20 H 1.48502 * 109.47341 * 300.00220 * 17 15 13 21 21 C 1.50708 * 109.46974 * 179.97438 * 11 9 8 22 22 C 1.38229 * 119.99869 * 292.97174 * 21 11 9 23 23 C 1.38237 * 119.99741 * 179.76205 * 22 21 11 24 24 C 1.38241 * 119.99940 * 0.51034 * 23 22 21 25 25 C 1.38233 * 119.99750 * 359.74457 * 24 23 22 26 26 C 1.38232 * 119.99758 * 113.24387 * 21 11 9 27 27 H 1.09002 * 109.46829 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47111 * 299.99887 * 1 2 3 29 29 H 1.09002 * 109.46995 * 60.00695 * 1 2 3 30 30 H 1.09000 * 109.47937 * 274.33573 * 4 3 2 31 31 H 1.09001 * 109.46682 * 34.33231 * 4 3 2 32 32 H 1.09001 * 109.47461 * 154.32781 * 4 3 2 33 33 H 1.08999 * 117.49908 * 359.97438 * 5 3 2 34 34 H 1.09004 * 117.49302 * 214.97080 * 5 3 2 35 35 H 0.97001 * 120.00144 * 335.00239 * 8 6 3 36 36 H 0.96997 * 120.00335 * 354.54714 * 16 15 13 37 37 H 1.07994 * 120.00577 * 359.97438 * 22 21 11 38 38 H 1.07999 * 120.00598 * 180.22872 * 23 22 21 39 39 H 1.07994 * 120.00165 * 179.71810 * 24 23 22 40 40 H 1.08004 * 119.99789 * 179.97438 * 25 24 23 41 41 H 1.08004 * 119.99912 * 0.02562 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.2373 2.3719 -0.7786 5 6 2.7495 1.7501 1.2636 6 6 3.5373 1.3988 -0.0006 7 1 3.9912 2.2198 -0.5555 8 7 4.2918 0.1431 -0.0005 9 6 5.5455 0.1101 -0.4941 10 8 6.0489 1.1199 -0.9389 11 6 6.3214 -1.1819 -0.4945 12 1 6.4320 -1.5396 0.5291 13 6 5.5821 -2.2116 -1.3094 14 1 4.9233 -1.8986 -2.1059 15 6 5.7466 -3.5533 -1.0380 16 7 6.6430 -3.9410 -0.1571 17 14 4.6963 -4.8206 -1.9213 18 1 5.0650 -6.1813 -1.4545 19 1 4.9255 -4.7199 -3.3851 20 1 3.2630 -4.5680 -1.6263 21 6 7.6836 -0.9496 -1.0959 22 6 7.8025 -0.6327 -2.4361 23 6 9.0516 -0.4148 -2.9867 24 6 10.1826 -0.5241 -2.1993 25 6 10.0640 -0.8462 -0.8603 26 6 8.8145 -1.0589 -0.3086 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.5279 2.3374 -1.8286 31 1 0.1676 2.1815 -0.6913 32 1 1.4656 3.3565 -0.3705 33 1 2.7923 1.0470 2.0954 34 1 2.6851 2.8025 1.5402 35 1 3.8892 -0.6647 0.3549 36 1 7.2421 -3.2916 0.2431 37 1 6.9193 -0.5520 -3.0524 38 1 9.1444 -0.1636 -4.0329 39 1 11.1588 -0.3584 -2.6304 40 1 10.9477 -0.9320 -0.2452 41 1 8.7219 -1.3112 0.7375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001453888045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:42 Heat of formation + Delta-G solvation = -33.984233 kcal Electronic energy + Delta-G solvation = -23108.236465 eV Core-core repulsion = 19760.918316 eV Total energy + Delta-G solvation = -3347.318149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.64511 -38.76246 -37.59673 -35.30773 -33.93489 -32.20445 -30.81183 -30.01259 -28.67379 -27.14126 -26.51566 -23.75266 -22.23269 -21.60983 -20.71978 -20.25657 -19.47246 -17.35300 -16.95196 -16.11618 -15.80520 -15.23153 -15.17970 -14.56350 -14.46912 -13.89582 -13.78244 -13.67030 -13.43804 -13.27106 -12.85406 -12.54694 -12.22175 -12.20561 -12.16410 -11.88803 -11.56858 -11.35392 -11.13878 -10.91862 -10.81813 -10.62788 -10.28273 -10.17767 -10.12888 -9.16679 -8.95552 -8.81884 -8.58670 -8.15699 -8.01182 -7.63856 -6.51506 -4.28267 2.29521 2.34388 3.32336 3.40130 3.41368 3.57408 3.59694 3.90295 4.01196 4.44299 4.73166 4.80009 4.86585 5.00683 5.20385 5.26892 5.33376 5.48129 5.56101 5.64894 5.67271 5.70525 5.71212 5.74703 5.82921 5.91112 5.97689 6.10808 6.32000 6.42367 6.48373 6.64525 6.89075 6.98987 7.07866 7.29819 7.30754 7.37212 7.61188 7.84535 7.97283 8.24731 8.32973 8.65079 9.13221 9.43482 10.86215 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.005828 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.662246 B = 4802.861609 C = 6243.529436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.342 6.342 3 C 0.024 3.976 4 C -0.142 4.142 5 C -0.213 4.213 6 C 0.117 3.883 7 H 0.138 0.862 8 N -0.693 5.693 9 C 0.538 3.462 10 O -0.565 6.565 11 C 0.045 3.955 12 H 0.065 0.935 13 C -0.591 4.591 14 H 0.058 0.942 15 C 0.032 3.968 16 N -0.895 5.895 17 Si 1.066 2.934 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.284 1.284 21 C -0.020 4.020 22 C -0.078 4.078 23 C -0.133 4.133 24 C -0.146 4.146 25 C -0.129 4.129 26 C -0.127 4.127 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.413 0.587 36 H 0.274 0.726 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.890 8.696 1.018 11.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.259 6.259 3 C -0.018 4.018 4 C -0.199 4.199 5 C -0.252 4.252 6 C 0.009 3.991 7 H 0.155 0.845 8 N -0.343 5.343 9 C 0.328 3.672 10 O -0.444 6.444 11 C 0.023 3.977 12 H 0.083 0.917 13 C -0.628 4.628 14 H 0.076 0.924 15 C -0.175 4.175 16 N -0.529 5.529 17 Si 0.894 3.106 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.211 1.211 21 C -0.021 4.021 22 C -0.096 4.096 23 C -0.151 4.151 24 C -0.164 4.164 25 C -0.147 4.147 26 C -0.146 4.146 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.249 0.751 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.724 7.585 0.627 10.843 hybrid contribution -0.086 1.364 0.287 1.396 sum -7.810 8.948 0.914 11.912 Atomic orbital electron populations 1.22793 0.81427 1.02716 0.99837 1.87978 1.19517 1.24179 1.94272 1.22505 0.93712 0.85654 0.99956 1.21788 1.00202 0.97238 1.00712 1.24254 1.04931 1.02312 0.93689 1.21913 0.86958 0.90922 0.99303 0.84469 1.45255 1.15045 1.10309 1.63664 1.21357 0.80649 0.90906 0.74336 1.90572 1.69714 1.36762 1.47311 1.18155 0.89441 0.90870 0.99192 0.91723 1.21556 1.29198 0.91591 1.20471 0.92351 1.25845 0.97619 0.97995 0.96006 1.70773 1.17625 1.38732 1.25745 0.83575 0.75501 0.75852 0.75687 1.20698 1.21286 1.21051 1.20119 0.95271 0.92930 0.93754 1.20798 0.96422 0.97335 0.95055 1.20985 0.93073 1.02080 0.98931 1.20823 0.97610 1.03609 0.94387 1.20880 0.96813 1.01719 0.95263 1.20970 0.92530 1.01834 0.99235 0.89496 0.94148 0.93623 0.91159 0.91233 0.91026 0.88042 0.88032 0.75119 0.91455 0.86964 0.87410 0.87520 0.87393 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.05 101.05 1.02 1.33 16 2 O -0.34 -5.20 10.39 -35.23 -0.37 -5.56 16 3 C 0.02 0.32 3.03 -90.62 -0.27 0.05 16 4 C -0.14 -1.49 9.49 37.16 0.35 -1.14 16 5 C -0.21 -2.79 10.05 -26.70 -0.27 -3.05 16 6 C 0.12 1.92 6.15 -67.91 -0.42 1.50 16 7 H 0.14 2.30 7.40 -51.93 -0.38 1.92 16 8 N -0.69 -13.69 5.37 -53.78 -0.29 -13.98 16 9 C 0.54 12.34 7.04 -10.98 -0.08 12.26 16 10 O -0.56 -13.93 15.03 5.56 0.08 -13.85 16 11 C 0.04 1.09 1.92 -94.07 -0.18 0.91 16 12 H 0.06 1.63 6.82 -51.93 -0.35 1.27 16 13 C -0.59 -15.37 7.42 -34.44 -0.26 -15.63 16 14 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 15 C 0.03 0.86 5.45 -17.82 -0.10 0.77 16 16 N -0.90 -25.27 13.56 55.43 0.75 -24.52 16 17 Si 1.07 24.07 29.91 -169.99 -5.08 18.99 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 C -0.02 -0.47 4.03 -104.62 -0.42 -0.89 16 22 C -0.08 -1.81 8.36 -39.58 -0.33 -2.14 16 23 C -0.13 -2.68 10.05 -39.58 -0.40 -3.08 16 24 C -0.15 -2.77 10.05 -39.58 -0.40 -3.17 16 25 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 26 C -0.13 -2.81 9.25 -39.58 -0.37 -3.18 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.44 6.47 -51.93 -0.34 0.10 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.62 5.78 -51.93 -0.30 0.32 16 32 H 0.07 0.63 7.90 -51.93 -0.41 0.22 16 33 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.10 1.09 8.05 -51.93 -0.42 0.67 16 35 H 0.41 8.20 8.28 -40.82 -0.34 7.86 16 36 H 0.27 7.67 6.30 -40.82 -0.26 7.41 16 37 H 0.11 2.67 7.86 -52.49 -0.41 2.25 16 38 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 41 H 0.11 2.27 7.96 -52.48 -0.42 1.85 16 LS Contribution 345.32 15.07 5.20 5.20 Total: -1.00 -30.99 345.32 -8.01 -39.00 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -5.79 Total: 13.11 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -2.51 Total: -18.39 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.46 Total: -38.50 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.28 Total: -19.41 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.08 Total: 18.99 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.99 -8.01 -39.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001453888045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.018 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds