Wall clock time and date at job start Tue Mar 31 2020 07:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99837 * 2 1 4 4 C 1.52998 * 115.55264 * 325.66376 * 3 2 1 5 5 C 1.53005 * 117.51936 * 111.37348 * 3 2 1 6 6 C 1.53001 * 117.49669 * 180.02562 * 3 2 1 7 7 H 1.08999 * 117.50393 * 144.97380 * 6 3 2 8 8 N 1.46494 * 117.50173 * 359.97052 * 6 3 2 9 9 C 1.34778 * 120.00360 * 155.00441 * 8 6 3 10 10 O 1.21280 * 119.99814 * 359.97438 * 9 8 6 11 11 C 1.50701 * 120.00025 * 180.02562 * 9 8 6 12 12 H 1.08992 * 109.47532 * 299.99950 * 11 9 8 13 13 C 1.50700 * 109.47082 * 60.00313 * 11 9 8 14 14 H 1.07998 * 120.00103 * 26.76569 * 13 11 9 15 15 C 1.37875 * 119.99716 * 206.77044 * 13 11 9 16 16 N 1.31514 * 120.00256 * 353.46210 * 15 13 11 17 17 Si 1.86802 * 119.99918 * 173.45833 * 15 13 11 18 18 H 1.48503 * 109.47289 * 180.02562 * 17 15 13 19 19 H 1.48498 * 109.47015 * 60.00090 * 17 15 13 20 20 H 1.48502 * 109.47341 * 300.00220 * 17 15 13 21 21 C 1.50708 * 109.46974 * 179.97438 * 11 9 8 22 22 C 1.38229 * 119.99869 * 292.97174 * 21 11 9 23 23 C 1.38237 * 119.99741 * 179.76205 * 22 21 11 24 24 C 1.38241 * 119.99940 * 0.51034 * 23 22 21 25 25 C 1.38233 * 119.99750 * 359.74457 * 24 23 22 26 26 C 1.38232 * 119.99758 * 113.24387 * 21 11 9 27 27 H 1.09002 * 109.46829 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47111 * 299.99887 * 1 2 3 29 29 H 1.09002 * 109.46995 * 60.00695 * 1 2 3 30 30 H 1.09000 * 109.47937 * 274.33573 * 4 3 2 31 31 H 1.09001 * 109.46682 * 34.33231 * 4 3 2 32 32 H 1.09001 * 109.47461 * 154.32781 * 4 3 2 33 33 H 1.08999 * 117.49908 * 359.97438 * 5 3 2 34 34 H 1.09004 * 117.49302 * 214.97080 * 5 3 2 35 35 H 0.97001 * 120.00144 * 335.00239 * 8 6 3 36 36 H 0.96997 * 120.00335 * 354.54714 * 16 15 13 37 37 H 1.07994 * 120.00577 * 359.97438 * 22 21 11 38 38 H 1.07999 * 120.00598 * 180.22872 * 23 22 21 39 39 H 1.07994 * 120.00165 * 179.71810 * 24 23 22 40 40 H 1.08004 * 119.99789 * 179.97438 * 25 24 23 41 41 H 1.08004 * 119.99912 * 0.02562 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.2373 2.3719 -0.7786 5 6 2.7495 1.7501 1.2636 6 6 3.5373 1.3988 -0.0006 7 1 3.9912 2.2198 -0.5555 8 7 4.2918 0.1431 -0.0005 9 6 5.5455 0.1101 -0.4941 10 8 6.0489 1.1199 -0.9389 11 6 6.3214 -1.1819 -0.4945 12 1 6.4320 -1.5396 0.5291 13 6 5.5821 -2.2116 -1.3094 14 1 4.9233 -1.8986 -2.1059 15 6 5.7466 -3.5533 -1.0380 16 7 6.6430 -3.9410 -0.1571 17 14 4.6963 -4.8206 -1.9213 18 1 5.0650 -6.1813 -1.4545 19 1 4.9255 -4.7199 -3.3851 20 1 3.2630 -4.5680 -1.6263 21 6 7.6836 -0.9496 -1.0959 22 6 7.8025 -0.6327 -2.4361 23 6 9.0516 -0.4148 -2.9867 24 6 10.1826 -0.5241 -2.1993 25 6 10.0640 -0.8462 -0.8603 26 6 8.8145 -1.0589 -0.3086 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.5279 2.3374 -1.8286 31 1 0.1676 2.1815 -0.6913 32 1 1.4656 3.3565 -0.3705 33 1 2.7923 1.0470 2.0954 34 1 2.6851 2.8025 1.5402 35 1 3.8892 -0.6647 0.3549 36 1 7.2421 -3.2916 0.2431 37 1 6.9193 -0.5520 -3.0524 38 1 9.1444 -0.1636 -4.0329 39 1 11.1588 -0.3584 -2.6304 40 1 10.9477 -0.9320 -0.2452 41 1 8.7219 -1.3112 0.7375 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001453888045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:40 Heat of formation + Delta-G solvation = -53.192718 kcal Electronic energy + Delta-G solvation = -23109.069408 eV Core-core repulsion = 19760.918316 eV Total energy + Delta-G solvation = -3348.151091 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.18141 -40.15362 -39.18150 -36.54766 -35.88058 -33.71835 -32.63239 -31.65278 -29.71553 -28.80471 -27.45270 -25.72947 -23.66102 -23.25620 -22.21482 -21.43456 -21.13145 -19.25921 -18.27403 -17.71949 -17.45001 -16.41767 -16.38523 -16.16626 -15.90502 -15.65882 -15.39365 -15.19072 -14.74635 -14.44926 -14.25330 -14.12130 -14.03731 -13.82643 -13.25326 -13.06112 -12.95237 -12.87208 -12.61505 -12.41256 -12.23277 -11.97863 -11.93651 -11.81448 -11.68148 -10.93383 -10.68804 -10.60210 -10.21879 -9.67252 -9.60711 -9.35493 -8.63613 -6.40022 0.64048 0.69563 1.53653 1.60437 1.70733 1.80476 2.22675 2.54905 2.62843 2.84696 3.07319 3.18678 3.70175 3.73317 3.98839 4.07728 4.16906 4.20617 4.32539 4.37696 4.46223 4.54718 4.54857 4.63772 4.70593 4.76556 4.79942 4.82375 4.86373 4.89099 4.94290 5.13532 5.24349 5.30863 5.57431 5.68044 5.71468 5.72566 6.03655 6.13414 6.27110 6.29849 6.51425 6.63719 7.36137 7.38727 8.74323 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.005828 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.662246 B = 4802.861609 C = 6243.529436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.378 6.378 3 C 0.036 3.964 4 C -0.140 4.140 5 C -0.188 4.188 6 C 0.071 3.929 7 H 0.128 0.872 8 N -0.686 5.686 9 C 0.535 3.465 10 O -0.588 6.588 11 C 0.044 3.956 12 H 0.046 0.954 13 C -0.587 4.587 14 H 0.044 0.956 15 C -0.010 4.010 16 N -0.920 5.920 17 Si 1.107 2.893 18 H -0.283 1.283 19 H -0.278 1.278 20 H -0.267 1.267 21 C -0.047 4.047 22 C -0.107 4.107 23 C -0.133 4.133 24 C -0.139 4.139 25 C -0.126 4.126 26 C -0.150 4.150 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.133 0.867 35 H 0.410 0.590 36 H 0.265 0.735 37 H 0.092 0.908 38 H 0.138 0.862 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.336 9.616 0.635 12.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.297 6.297 3 C -0.005 4.005 4 C -0.197 4.197 5 C -0.227 4.227 6 C -0.035 4.035 7 H 0.146 0.854 8 N -0.334 5.334 9 C 0.324 3.676 10 O -0.470 6.470 11 C 0.023 3.977 12 H 0.064 0.936 13 C -0.624 4.624 14 H 0.063 0.937 15 C -0.211 4.211 16 N -0.555 5.555 17 Si 0.930 3.070 18 H -0.208 1.208 19 H -0.204 1.204 20 H -0.192 1.192 21 C -0.048 4.048 22 C -0.126 4.126 23 C -0.151 4.151 24 C -0.157 4.157 25 C -0.143 4.143 26 C -0.168 4.168 27 H 0.110 0.890 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.151 0.849 35 H 0.245 0.755 36 H 0.076 0.924 37 H 0.110 0.890 38 H 0.156 0.844 39 H 0.169 0.831 40 H 0.162 0.838 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.215 8.535 0.258 11.849 hybrid contribution 0.053 1.148 0.418 1.223 sum -8.162 9.683 0.676 12.682 Atomic orbital electron populations 1.23024 0.79174 1.03735 1.01431 1.87921 1.22064 1.25217 1.94479 1.22640 0.91658 0.86110 1.00119 1.21846 1.00927 0.97052 0.99828 1.24289 1.02041 1.03966 0.92400 1.22190 0.88910 0.89400 1.03004 0.85399 1.45146 1.14197 1.11632 1.62431 1.21109 0.81638 0.90133 0.74737 1.90531 1.70511 1.37155 1.48769 1.18078 0.90526 0.91269 0.97815 0.93622 1.21610 1.28712 0.92216 1.19906 0.93744 1.27036 0.98033 0.99971 0.96059 1.70859 1.18786 1.38546 1.27355 0.83049 0.75131 0.73721 0.75137 1.20838 1.20375 1.19211 1.20147 0.95356 0.94790 0.94528 1.20813 0.97336 0.99591 0.94832 1.21360 0.92232 1.00801 1.00669 1.21328 0.99040 1.01465 0.93880 1.21325 0.96832 0.99946 0.96231 1.21157 0.93402 1.02845 0.99399 0.88951 0.92330 0.92129 0.91850 0.89113 0.88925 0.88508 0.84885 0.75471 0.92431 0.89005 0.84402 0.83084 0.83814 0.87377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.05 113.37 1.14 1.57 16 2 O -0.38 -11.18 10.39 -148.98 -1.55 -12.73 16 3 C 0.04 0.95 3.03 -10.79 -0.03 0.92 16 4 C -0.14 -2.59 9.49 71.98 0.68 -1.91 16 5 C -0.19 -4.67 10.05 30.61 0.31 -4.36 16 6 C 0.07 2.37 6.15 45.01 0.28 2.65 16 7 H 0.13 4.43 7.40 -2.39 -0.02 4.41 16 8 N -0.69 -28.35 5.37 -442.47 -2.37 -30.72 16 9 C 0.53 25.88 7.04 87.66 0.62 26.50 16 10 O -0.59 -30.43 15.03 -3.03 -0.05 -30.47 16 11 C 0.04 2.29 1.92 -13.03 -0.03 2.26 16 12 H 0.05 2.47 6.82 -2.39 -0.02 2.45 16 13 C -0.59 -31.89 7.42 25.60 0.19 -31.70 16 14 H 0.04 2.48 7.82 -2.91 -0.02 2.46 16 15 C -0.01 -0.53 5.45 84.65 0.46 -0.07 16 16 N -0.92 -53.57 13.56 21.45 0.29 -53.28 16 17 Si 1.11 49.12 29.91 68.60 2.05 51.18 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 21 C -0.05 -2.35 4.03 -19.87 -0.08 -2.43 16 22 C -0.11 -5.13 8.36 22.27 0.19 -4.94 16 23 C -0.13 -5.21 10.05 22.27 0.22 -4.99 16 24 C -0.14 -4.89 10.05 22.27 0.22 -4.66 16 25 C -0.13 -4.70 10.05 22.27 0.22 -4.48 16 26 C -0.15 -6.74 9.25 22.27 0.21 -6.53 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 1.00 6.47 -2.39 -0.02 0.99 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.31 5.78 -2.39 -0.01 1.29 16 32 H 0.09 1.34 7.90 -2.39 -0.02 1.32 16 33 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.13 2.45 8.05 -2.39 -0.02 2.44 16 35 H 0.41 17.12 8.28 -92.71 -0.77 16.35 16 36 H 0.27 15.51 6.30 -92.71 -0.58 14.92 16 37 H 0.09 4.61 7.86 -2.91 -0.02 4.59 16 38 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 39 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 40 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 41 H 0.11 4.71 7.96 -2.91 -0.02 4.68 16 Total: -1.00 -70.04 345.32 3.43 -66.61 By element: Atomic # 1 Polarization: 41.14 SS G_CDS: 0.45 Total: 41.59 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 4.60 Total: -32.17 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -2.08 Total: -84.00 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -1.59 Total: -43.20 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 2.05 Total: 51.18 kcal Total: -70.04 3.43 -66.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001453888045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.421 kcal (2) G-P(sol) polarization free energy of solvation -70.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds