Wall clock time and date at job start Tue Mar 31 2020 06:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99894 * 2 1 4 4 N 1.46500 * 109.47206 * 126.19552 * 3 2 1 5 5 C 1.46495 * 120.00173 * 277.38366 * 4 3 2 6 6 C 1.50703 * 109.47094 * 269.99746 * 5 4 3 7 7 H 1.08001 * 119.99780 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99871 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99501 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00197 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46896 * 90.00479 * 10 8 6 12 12 H 1.48499 * 109.46955 * 210.00171 * 10 8 6 13 13 H 1.48495 * 109.47119 * 330.00412 * 10 8 6 14 14 C 1.34780 * 119.99665 * 97.37711 * 4 3 2 15 15 O 1.21591 * 119.99736 * 185.64668 * 14 4 3 16 16 C 1.47600 * 120.00231 * 5.65075 * 14 4 3 17 17 C 1.39752 * 120.08661 * 131.38274 * 16 14 4 18 18 C 1.37687 * 119.90738 * 180.27665 * 17 16 14 19 19 C 1.39016 * 120.08434 * 359.49308 * 18 17 16 20 20 O 1.35713 * 119.90591 * 180.25448 * 19 18 17 21 21 C 1.42897 * 117.00231 * 0.02562 * 20 19 18 22 22 C 1.38971 * 120.18346 * 0.23284 * 19 18 17 23 23 C 1.50701 * 119.95932 * 180.02562 * 22 19 18 24 24 C 1.37720 * 120.08532 * 0.02562 * 22 19 18 25 25 H 1.07997 * 119.99959 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00080 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00080 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47316 * 6.19877 * 3 2 1 29 29 H 1.09003 * 109.47698 * 246.20139 * 3 2 1 30 30 H 1.09000 * 109.47526 * 29.99532 * 5 4 3 31 31 H 1.09001 * 109.47366 * 149.99699 * 5 4 3 32 32 H 0.97003 * 119.99741 * 179.97438 * 9 8 6 33 33 H 1.07997 * 120.04966 * 0.02562 * 17 16 14 34 34 H 1.08000 * 119.95301 * 179.77272 * 18 17 16 35 35 H 1.09003 * 109.47253 * 299.99875 * 21 20 19 36 36 H 1.08993 * 109.47122 * 59.99702 * 21 20 19 37 37 H 1.09000 * 109.47308 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.47170 * 89.99716 * 23 22 19 39 39 H 1.09004 * 109.46962 * 210.00166 * 23 22 19 40 40 H 1.08994 * 109.46814 * 329.99906 * 23 22 19 41 41 H 1.07998 * 120.04731 * 179.97438 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0140 1.3202 1.1146 5 6 2.5609 1.6862 2.4588 6 6 2.7020 3.1746 2.6485 7 1 3.0907 3.7866 1.8480 8 6 2.3358 3.7549 3.8445 9 7 2.4594 5.0537 4.0101 10 14 1.6642 2.6963 5.2293 11 1 2.7853 2.2301 6.0843 12 1 0.7165 3.4948 6.0476 13 1 0.9569 1.5228 4.6569 14 6 4.3054 0.9972 0.9034 15 8 5.0717 0.9096 1.8433 16 6 4.7893 0.7499 -0.4689 17 6 5.9581 1.3681 -0.9216 18 6 6.4031 1.1393 -2.2044 19 6 5.6972 0.2864 -3.0451 20 8 6.1419 0.0594 -4.3071 21 6 7.3406 0.7291 -4.7028 22 6 4.5377 -0.3347 -2.5968 23 6 3.7767 -1.2588 -3.5123 24 6 4.0830 -0.1069 -1.3169 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3603 2.1306 0.1110 29 1 2.6043 1.4125 -0.9403 30 1 1.5156 1.4021 2.5799 31 1 3.1671 1.1663 3.2007 32 1 2.2015 5.4621 4.8514 33 1 6.5093 2.0275 -0.2677 34 1 7.3042 1.6195 -2.5562 35 1 7.1946 1.8070 -4.6332 36 1 8.1576 0.4301 -4.0461 37 1 7.5839 0.4614 -5.7310 38 1 4.1499 -2.2760 -3.3939 39 1 2.7168 -1.2288 -3.2596 40 1 3.9130 -0.9397 -4.5456 41 1 3.1816 -0.5896 -0.9693 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521618910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:56 Heat of formation + Delta-G solvation = -16.274085 kcal Electronic energy + Delta-G solvation = -22999.660084 eV Core-core repulsion = 19653.109905 eV Total energy + Delta-G solvation = -3346.550179 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52292 -39.20173 -37.03758 -35.84882 -33.20268 -32.86930 -32.13682 -30.59464 -28.18696 -27.68863 -26.77231 -25.59545 -23.47794 -22.18702 -21.34692 -20.07100 -18.57039 -18.07258 -16.90440 -16.79846 -16.42209 -15.97484 -15.69202 -14.91524 -14.56467 -14.21746 -14.03380 -13.92717 -13.55955 -13.37011 -13.08045 -12.88805 -12.54557 -12.30556 -12.16351 -12.06484 -11.76347 -11.69136 -11.57618 -11.24372 -11.06363 -10.97097 -10.74379 -10.51301 -10.14149 -9.57732 -9.29213 -9.13829 -8.79959 -8.58228 -8.11266 -7.74275 -6.08347 -4.07200 1.17947 1.33308 2.35571 3.10772 3.25860 3.30455 3.36488 3.38704 3.70852 4.02444 4.40612 4.69057 4.71686 4.85451 4.94445 4.98351 5.14158 5.21602 5.24086 5.24773 5.31752 5.36352 5.50944 5.54055 5.61696 5.65705 5.85069 5.95817 6.10728 6.17302 6.27453 6.29739 6.50566 6.64534 6.71802 6.75190 6.84165 6.97027 7.25053 7.35189 7.61404 8.21410 8.46927 8.89922 8.96684 9.52004 11.04925 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021171 B = 0.004468 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.230776 B = 6265.529172 C = 7086.771130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.174 4.174 3 C 0.128 3.872 4 N -0.581 5.581 5 C 0.216 3.784 6 C -0.530 4.530 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.555 3.445 15 O -0.536 6.536 16 C -0.147 4.147 17 C -0.035 4.035 18 C -0.210 4.210 19 C 0.135 3.865 20 O -0.314 6.314 21 C 0.026 3.974 22 C -0.125 4.125 23 C -0.102 4.102 24 C -0.065 4.065 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.032 0.968 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.703 -11.389 -17.901 21.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.193 4.193 3 C 0.004 3.996 4 N -0.311 5.311 5 C 0.096 3.904 6 C -0.569 4.569 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.536 5.536 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.342 3.658 15 O -0.414 6.414 16 C -0.150 4.150 17 C -0.054 4.054 18 C -0.229 4.229 19 C 0.090 3.910 20 O -0.227 6.227 21 C -0.069 4.069 22 C -0.126 4.126 23 C -0.159 4.159 24 C -0.083 4.083 25 H 0.114 0.886 26 H 0.119 0.881 27 H 0.126 0.874 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.988 -11.381 -17.389 20.996 hybrid contribution -0.093 -0.101 0.899 0.910 sum 2.895 -11.482 -16.490 20.301 Atomic orbital electron populations 1.23856 0.95752 1.01955 0.99940 1.23460 0.96421 0.98905 1.00508 1.20790 0.92808 0.95304 0.90658 1.47806 1.07114 1.65525 1.10651 1.19680 0.94925 0.96843 0.78963 1.21335 1.43615 0.90609 1.01291 0.90693 1.24837 0.95115 0.94865 0.98067 1.69899 1.48125 1.09821 1.25724 0.86865 0.79442 0.80759 0.82771 1.19869 1.21055 1.18967 1.18137 0.82411 0.77471 0.87797 1.90759 1.54988 1.52023 1.43652 1.20027 0.97628 1.01995 0.95346 1.20973 0.93496 0.96436 0.94474 1.21128 1.02701 1.03685 0.95339 1.18996 0.93519 0.94721 0.83778 1.85996 1.42111 1.67036 1.27572 1.23068 0.85409 0.97311 1.01129 1.19117 0.95542 1.02293 0.95625 1.20583 0.99054 0.97729 0.98500 1.21454 0.98983 0.96238 0.91611 0.88598 0.88080 0.87435 0.89396 0.89516 0.95004 0.94367 0.92560 0.84866 0.85074 0.92504 0.92562 0.88348 0.91544 0.91506 0.91233 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 14.32 29.01 0.42 -1.75 16 2 C -0.17 -2.39 8.56 -36.03 -0.31 -2.70 16 3 C 0.13 2.12 5.34 -5.19 -0.03 2.09 16 4 N -0.58 -12.34 2.45 -177.64 -0.43 -12.78 16 5 C 0.22 5.38 4.28 -5.19 -0.02 5.36 16 6 C -0.53 -15.33 9.94 -34.44 -0.34 -15.67 16 7 H 0.07 2.37 8.06 -52.49 -0.42 1.94 16 8 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 9 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 10 Si 0.87 21.73 27.47 -169.99 -4.67 17.07 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 14 C 0.55 11.99 7.22 -12.44 -0.09 11.90 16 15 O -0.54 -13.74 16.58 5.29 0.09 -13.66 16 16 C -0.15 -2.52 4.96 -104.96 -0.52 -3.05 16 17 C -0.03 -0.55 9.71 -39.22 -0.38 -0.93 16 18 C -0.21 -2.70 9.01 -39.49 -0.36 -3.06 16 19 C 0.14 1.72 6.67 -39.02 -0.26 1.46 16 20 O -0.31 -3.45 9.52 -18.84 -0.18 -3.63 16 21 C 0.03 0.19 9.81 101.05 0.99 1.18 16 22 C -0.13 -1.59 5.89 -104.54 -0.62 -2.21 16 23 C -0.10 -1.01 9.78 36.01 0.35 -0.66 16 24 C -0.06 -0.92 7.12 -39.22 -0.28 -1.20 16 25 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 26 H 0.10 1.22 7.85 -52.49 -0.41 0.81 16 27 H 0.11 1.37 6.51 -52.49 -0.34 1.03 16 28 H 0.09 1.51 7.78 -51.93 -0.40 1.11 16 29 H 0.09 1.31 5.26 -51.93 -0.27 1.03 16 30 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 31 H 0.04 1.02 6.78 -51.93 -0.35 0.67 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 34 H 0.13 1.33 6.28 -52.49 -0.33 1.00 16 35 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 36 H 0.06 0.37 7.65 -51.93 -0.40 -0.02 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 40 H 0.07 0.67 7.52 -51.93 -0.39 0.27 16 41 H 0.14 1.84 4.15 -52.49 -0.22 1.62 16 LS Contribution 340.21 15.07 5.13 5.13 Total: -1.00 -34.56 340.21 -6.42 -40.98 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.59 Total: 1.01 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.54 Total: -7.17 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.34 Total: -39.73 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.09 Total: -17.29 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.56 -6.42 -40.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521618910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.706 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds