Wall clock time and date at job start Tue Mar 31 2020 06:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99894 * 2 1 4 4 N 1.46500 * 109.47206 * 126.19552 * 3 2 1 5 5 C 1.46495 * 120.00173 * 277.38366 * 4 3 2 6 6 C 1.50703 * 109.47094 * 269.99746 * 5 4 3 7 7 H 1.08001 * 119.99780 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99871 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99501 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00197 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46896 * 90.00479 * 10 8 6 12 12 H 1.48499 * 109.46955 * 210.00171 * 10 8 6 13 13 H 1.48495 * 109.47119 * 330.00412 * 10 8 6 14 14 C 1.34780 * 119.99665 * 97.37711 * 4 3 2 15 15 O 1.21591 * 119.99736 * 185.64668 * 14 4 3 16 16 C 1.47600 * 120.00231 * 5.65075 * 14 4 3 17 17 C 1.39752 * 120.08661 * 131.38274 * 16 14 4 18 18 C 1.37687 * 119.90738 * 180.27665 * 17 16 14 19 19 C 1.39016 * 120.08434 * 359.49308 * 18 17 16 20 20 O 1.35713 * 119.90591 * 180.25448 * 19 18 17 21 21 C 1.42897 * 117.00231 * 0.02562 * 20 19 18 22 22 C 1.38971 * 120.18346 * 0.23284 * 19 18 17 23 23 C 1.50701 * 119.95932 * 180.02562 * 22 19 18 24 24 C 1.37720 * 120.08532 * 0.02562 * 22 19 18 25 25 H 1.07997 * 119.99959 * 179.97438 * 1 2 3 26 26 H 1.07999 * 120.00080 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00080 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47316 * 6.19877 * 3 2 1 29 29 H 1.09003 * 109.47698 * 246.20139 * 3 2 1 30 30 H 1.09000 * 109.47526 * 29.99532 * 5 4 3 31 31 H 1.09001 * 109.47366 * 149.99699 * 5 4 3 32 32 H 0.97003 * 119.99741 * 179.97438 * 9 8 6 33 33 H 1.07997 * 120.04966 * 0.02562 * 17 16 14 34 34 H 1.08000 * 119.95301 * 179.77272 * 18 17 16 35 35 H 1.09003 * 109.47253 * 299.99875 * 21 20 19 36 36 H 1.08993 * 109.47122 * 59.99702 * 21 20 19 37 37 H 1.09000 * 109.47308 * 180.02562 * 21 20 19 38 38 H 1.08997 * 109.47170 * 89.99716 * 23 22 19 39 39 H 1.09004 * 109.46962 * 210.00166 * 23 22 19 40 40 H 1.08994 * 109.46814 * 329.99906 * 23 22 19 41 41 H 1.07998 * 120.04731 * 179.97438 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0140 1.3202 1.1146 5 6 2.5609 1.6862 2.4588 6 6 2.7020 3.1746 2.6485 7 1 3.0907 3.7866 1.8480 8 6 2.3358 3.7549 3.8445 9 7 2.4594 5.0537 4.0101 10 14 1.6642 2.6963 5.2293 11 1 2.7853 2.2301 6.0843 12 1 0.7165 3.4948 6.0476 13 1 0.9569 1.5228 4.6569 14 6 4.3054 0.9972 0.9034 15 8 5.0717 0.9096 1.8433 16 6 4.7893 0.7499 -0.4689 17 6 5.9581 1.3681 -0.9216 18 6 6.4031 1.1393 -2.2044 19 6 5.6972 0.2864 -3.0451 20 8 6.1419 0.0594 -4.3071 21 6 7.3406 0.7291 -4.7028 22 6 4.5377 -0.3347 -2.5968 23 6 3.7767 -1.2588 -3.5123 24 6 4.0830 -0.1069 -1.3169 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3603 2.1306 0.1110 29 1 2.6043 1.4125 -0.9403 30 1 1.5156 1.4021 2.5799 31 1 3.1671 1.1663 3.2007 32 1 2.2015 5.4621 4.8514 33 1 6.5093 2.0275 -0.2677 34 1 7.3042 1.6195 -2.5562 35 1 7.1946 1.8070 -4.6332 36 1 8.1576 0.4301 -4.0461 37 1 7.5839 0.4614 -5.7310 38 1 4.1499 -2.2760 -3.3939 39 1 2.7168 -1.2288 -3.2596 40 1 3.9130 -0.9397 -4.5456 41 1 3.1816 -0.5896 -0.9693 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521618910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:55 Heat of formation + Delta-G solvation = -38.505183 kcal Electronic energy + Delta-G solvation = -23000.624097 eV Core-core repulsion = 19653.109905 eV Total energy + Delta-G solvation = -3347.514192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.69007 -40.54349 -38.15783 -37.39797 -35.09059 -33.92369 -33.75685 -31.91219 -29.89254 -28.49347 -27.74772 -26.95181 -25.18939 -23.36108 -22.75848 -21.20973 -20.01601 -19.12203 -18.99776 -18.21155 -17.68302 -17.17566 -16.71943 -16.23513 -16.08961 -15.93288 -15.26826 -15.03401 -14.71295 -14.45652 -14.41391 -14.23387 -14.13208 -13.63045 -13.50779 -13.05616 -13.04551 -12.97879 -12.85469 -12.62355 -12.49661 -12.30187 -12.03099 -11.93450 -11.77387 -11.73974 -10.86174 -10.83486 -10.37905 -9.86626 -9.55216 -9.14265 -8.35943 -6.41619 0.01227 0.25673 1.28687 1.33008 1.35869 1.44685 1.71640 2.28642 2.29739 2.31863 2.69681 2.98254 3.55033 3.70485 3.79054 4.05120 4.13189 4.18368 4.20622 4.37955 4.41921 4.42379 4.53954 4.64457 4.73983 4.77367 4.82700 4.85830 4.89532 4.91462 5.06995 5.15655 5.22849 5.35312 5.40271 5.42483 5.48618 5.64488 5.70925 5.89444 6.21121 6.33973 6.57047 6.59468 7.15719 7.29930 8.80973 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021171 B = 0.004468 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.230776 B = 6265.529172 C = 7086.771130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.191 4.191 3 C 0.126 3.874 4 N -0.586 5.586 5 C 0.227 3.773 6 C -0.540 4.540 7 H 0.028 0.972 8 C 0.015 3.985 9 N -0.943 5.943 10 Si 0.946 3.054 11 H -0.276 1.276 12 H -0.272 1.272 13 H -0.238 1.238 14 C 0.548 3.452 15 O -0.593 6.593 16 C -0.174 4.174 17 C -0.053 4.053 18 C -0.204 4.204 19 C 0.143 3.857 20 O -0.316 6.316 21 C 0.014 3.986 22 C -0.125 4.125 23 C -0.100 4.100 24 C -0.058 4.058 25 H 0.125 0.875 26 H 0.100 0.900 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.020 0.980 32 H 0.269 0.731 33 H 0.116 0.884 34 H 0.158 0.842 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.125 0.875 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.446 -13.921 -19.923 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.210 4.210 3 C 0.004 3.996 4 N -0.315 5.315 5 C 0.105 3.895 6 C -0.578 4.578 7 H 0.047 0.953 8 C -0.184 4.184 9 N -0.583 5.583 10 Si 0.769 3.231 11 H -0.201 1.201 12 H -0.197 1.197 13 H -0.161 1.161 14 C 0.338 3.662 15 O -0.475 6.475 16 C -0.177 4.177 17 C -0.073 4.073 18 C -0.222 4.222 19 C 0.096 3.904 20 O -0.229 6.229 21 C -0.080 4.080 22 C -0.125 4.125 23 C -0.156 4.156 24 C -0.076 4.076 25 H 0.143 0.857 26 H 0.118 0.882 27 H 0.139 0.861 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.176 0.824 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.143 0.857 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.706 -13.920 -19.479 24.003 hybrid contribution 0.374 0.764 1.324 1.573 sum 2.080 -13.156 -18.156 22.517 Atomic orbital electron populations 1.24115 0.95143 1.03303 0.96744 1.23263 0.96864 0.97564 1.03318 1.20983 0.92048 0.96975 0.89547 1.47880 1.08132 1.64935 1.10550 1.19325 0.95484 0.93707 0.80961 1.21533 1.43367 0.92546 1.00386 0.95347 1.25817 0.95313 0.96242 1.00982 1.70046 1.49443 1.11954 1.26854 0.85738 0.78930 0.79656 0.78821 1.20142 1.19679 1.16129 1.18879 0.81926 0.76199 0.89210 1.90699 1.56284 1.54665 1.45808 1.19752 0.99322 1.04998 0.93629 1.20958 0.93472 0.97036 0.95790 1.21301 1.03461 1.03518 0.93941 1.19147 0.93184 0.93617 0.84424 1.86013 1.43490 1.67244 1.26151 1.23418 0.84171 0.97638 1.02800 1.19461 0.95629 1.02155 0.95293 1.20654 0.99582 0.97442 0.97937 1.21507 0.99011 0.95345 0.91740 0.85711 0.88191 0.86096 0.90667 0.88281 0.93082 0.96201 0.92156 0.86600 0.82422 0.91818 0.91757 0.85667 0.90365 0.89989 0.90621 0.82711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 14.32 67.78 0.97 -2.33 16 2 C -0.19 -4.85 8.56 25.65 0.22 -4.63 16 3 C 0.13 4.19 5.34 85.63 0.46 4.64 16 4 N -0.59 -25.70 2.45 -834.18 -2.04 -27.74 16 5 C 0.23 11.56 4.28 85.64 0.37 11.93 16 6 C -0.54 -32.68 9.94 25.60 0.25 -32.42 16 7 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 8 C 0.01 0.89 5.47 84.65 0.46 1.35 16 9 N -0.94 -60.30 13.96 21.45 0.30 -60.00 16 10 Si 0.95 45.16 27.47 68.60 1.88 47.04 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 13 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 14 C 0.55 24.90 7.22 86.71 0.63 25.53 16 15 O -0.59 -32.35 16.58 -4.00 -0.07 -32.42 16 16 C -0.17 -6.16 4.96 -20.08 -0.10 -6.26 16 17 C -0.05 -1.75 9.71 22.51 0.22 -1.53 16 18 C -0.20 -5.04 9.01 22.33 0.20 -4.84 16 19 C 0.14 3.31 6.67 22.63 0.15 3.46 16 20 O -0.32 -5.95 9.52 -90.35 -0.86 -6.81 16 21 C 0.01 0.16 9.81 113.37 1.11 1.27 16 22 C -0.12 -2.89 5.89 -19.81 -0.12 -3.00 16 23 C -0.10 -1.63 9.78 71.24 0.70 -0.93 16 24 C -0.06 -1.58 7.12 22.51 0.16 -1.42 16 25 H 0.12 1.98 8.06 -2.91 -0.02 1.96 16 26 H 0.10 2.15 7.85 -2.91 -0.02 2.13 16 27 H 0.12 2.76 6.51 -2.91 -0.02 2.74 16 28 H 0.07 2.64 7.78 -2.38 -0.02 2.62 16 29 H 0.10 2.98 5.26 -2.39 -0.01 2.97 16 30 H 0.05 2.39 7.13 -2.39 -0.02 2.37 16 31 H 0.02 1.09 6.78 -2.39 -0.02 1.07 16 32 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 33 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 34 H 0.16 2.92 6.28 -2.91 -0.02 2.90 16 35 H 0.06 0.66 7.65 -2.39 -0.02 0.65 16 36 H 0.06 0.66 7.65 -2.39 -0.02 0.64 16 37 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.11 8.08 -2.38 -0.02 1.09 16 40 H 0.07 1.17 7.52 -2.39 -0.02 1.15 16 41 H 0.16 3.74 4.15 -2.91 -0.01 3.72 16 Total: -1.00 -79.76 340.21 5.87 -73.88 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.97 Total: 15.24 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 5.68 Total: -9.19 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -1.74 Total: -87.75 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.93 Total: -39.23 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.04 kcal Total: -79.76 5.87 -73.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521618910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.377 kcal (2) G-P(sol) polarization free energy of solvation -79.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds