Wall clock time and date at job start Tue Mar 31 2020 07:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00043 * 2 1 4 4 C 1.52997 * 113.41839 * 46.79575 * 3 2 1 5 5 C 1.53499 * 114.20626 * 179.97438 * 3 2 1 6 6 N 1.47069 * 87.98722 * 87.51763 * 5 3 2 7 7 C 1.34780 * 136.05969 * 207.09124 * 6 5 3 8 8 O 1.21289 * 119.99603 * 359.97438 * 7 6 5 9 9 C 1.50693 * 120.00214 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.47017 * 59.99660 * 9 7 6 11 11 C 1.50696 * 109.47115 * 299.99973 * 9 7 6 12 12 H 1.07998 * 120.00476 * 125.77241 * 11 9 7 13 13 C 1.37888 * 119.99740 * 305.76909 * 11 9 7 14 14 N 1.31509 * 120.00234 * 5.09699 * 13 11 9 15 15 Si 1.86803 * 119.99653 * 185.09657 * 13 11 9 16 16 H 1.48499 * 109.47471 * 60.00206 * 15 13 11 17 17 H 1.48506 * 109.46667 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47149 * 299.99715 * 15 13 11 19 19 C 1.50699 * 109.47227 * 179.97438 * 9 7 6 20 20 C 1.38233 * 120.00471 * 115.07767 * 19 9 7 21 21 C 1.38227 * 120.00524 * 179.97438 * 20 19 9 22 22 C 1.38236 * 119.99604 * 359.97438 * 21 20 19 23 23 C 1.38232 * 120.00166 * 0.06831 * 22 21 20 24 24 C 1.38234 * 119.99659 * 295.05433 * 19 9 7 25 25 C 1.47066 * 87.88214 * 27.34103 * 6 5 3 26 26 H 1.09008 * 109.46948 * 60.00379 * 1 2 3 27 27 H 1.09004 * 109.47448 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47195 * 300.00855 * 1 2 3 29 29 H 1.08999 * 109.47121 * 193.20547 * 4 3 2 30 30 H 1.09003 * 109.46803 * 313.19896 * 4 3 2 31 31 H 1.08996 * 109.47347 * 73.19715 * 4 3 2 32 32 H 1.09004 * 113.46505 * 332.73731 * 5 3 2 33 33 H 1.09001 * 113.46988 * 202.29477 * 5 3 2 34 34 H 0.96991 * 120.00153 * 180.02562 * 14 13 11 35 35 H 1.08007 * 119.99387 * 359.97438 * 20 19 9 36 36 H 1.07998 * 120.00111 * 179.72642 * 21 20 19 37 37 H 1.08006 * 119.99940 * 179.97438 * 22 21 20 38 38 H 1.08007 * 120.00262 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.00435 * 359.97438 * 24 19 9 40 40 H 1.09001 * 113.46857 * 87.44497 * 25 6 5 41 41 H 1.09003 * 113.46810 * 217.87616 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.3795 2.2518 1.0234 5 6 3.5452 1.3109 0.0006 6 7 3.4944 1.2468 -1.4678 7 6 4.2945 0.7807 -2.4471 8 8 5.3541 0.2605 -2.1684 9 6 3.8726 0.9059 -3.8884 10 1 3.7376 1.9585 -4.1373 11 6 2.5745 0.1697 -4.0976 12 1 1.7281 0.6803 -4.5327 13 6 2.4674 -1.1559 -3.7336 14 7 3.4630 -1.7500 -3.1130 15 14 0.9078 -2.1079 -4.1221 16 1 0.6882 -2.1203 -5.5907 17 1 1.0435 -3.5024 -3.6296 18 1 -0.2483 -1.4579 -3.4541 19 6 4.9359 0.3127 -4.7764 20 6 4.6571 -0.8098 -5.5334 21 6 5.6322 -1.3537 -6.3484 22 6 6.8861 -0.7746 -6.4067 23 6 7.1652 0.3474 -5.6490 24 6 6.1900 0.8914 -4.8343 25 6 2.1892 1.9208 -1.3976 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 1.6955 3.2742 0.8158 30 1 0.2934 2.1868 0.9573 31 1 1.7001 1.9688 2.0259 32 1 3.9823 0.4237 0.4590 33 1 3.9758 2.2376 0.3799 34 1 3.3878 -2.6825 -2.8573 35 1 3.6773 -1.2619 -5.4881 36 1 5.4157 -2.2332 -6.9364 37 1 7.6482 -1.1997 -7.0431 38 1 8.1450 0.7996 -5.6943 39 1 6.4076 1.7689 -4.2435 40 1 2.2622 3.0083 -1.3869 41 1 1.4709 1.5534 -2.1305 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567180044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:29 Heat of formation + Delta-G solvation = 0.912436 kcal Electronic energy + Delta-G solvation = -24218.110574 eV Core-core repulsion = 20872.305658 eV Total energy + Delta-G solvation = -3345.804916 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.98087 -38.45555 -36.94631 -35.39806 -33.61720 -30.83534 -30.39902 -29.61828 -27.78764 -26.76942 -25.61815 -25.15814 -23.60031 -21.22561 -20.50022 -19.70144 -18.23203 -16.83819 -15.94897 -15.81312 -15.45021 -15.09867 -14.88432 -14.67179 -14.26052 -14.02032 -13.67507 -13.64496 -12.97010 -12.61831 -12.34528 -12.23440 -12.10313 -11.98272 -11.69917 -11.54905 -11.52078 -11.26628 -10.96540 -10.85652 -10.74168 -10.30232 -10.03258 -9.99908 -9.67161 -9.34669 -9.14054 -8.55429 -8.21541 -7.74180 -7.57144 -7.37638 -6.08095 -4.21305 2.51510 2.61834 3.22650 3.30433 3.31866 3.88249 3.97142 4.23209 4.40321 4.64324 5.00757 5.14883 5.17801 5.27155 5.49624 5.67086 5.70499 5.80580 5.82788 5.85166 5.95164 5.97209 6.04914 6.05999 6.07433 6.22190 6.23826 6.41389 6.52866 6.64350 6.73116 6.88050 7.11028 7.17003 7.25354 7.52410 7.62082 7.65679 7.76352 7.85747 8.17608 8.30588 8.74402 9.01884 9.42305 9.78395 10.93480 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017854 B = 0.007042 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.909769 B = 3975.333937 C = 5107.907904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.340 6.340 3 C 0.068 3.932 4 C -0.166 4.166 5 C 0.115 3.885 6 N -0.629 5.629 7 C 0.590 3.410 8 O -0.547 6.547 9 C 0.064 3.936 10 H 0.052 0.948 11 C -0.537 4.537 12 H 0.064 0.936 13 C 0.079 3.921 14 N -0.839 5.839 15 Si 0.883 3.117 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.019 4.019 20 C -0.058 4.058 21 C -0.149 4.149 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.114 4.114 25 C 0.086 3.914 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.267 0.733 35 H 0.137 0.863 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.539 7.149 3.894 9.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.258 6.258 3 C 0.027 3.973 4 C -0.224 4.224 5 C -0.009 4.009 6 N -0.366 5.366 7 C 0.383 3.617 8 O -0.423 6.423 9 C 0.043 3.957 10 H 0.070 0.930 11 C -0.575 4.575 12 H 0.082 0.918 13 C -0.129 4.129 14 N -0.471 5.471 15 Si 0.711 3.289 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.020 4.020 20 C -0.076 4.076 21 C -0.167 4.167 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.133 4.133 25 C -0.039 4.039 26 H 0.062 0.938 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.155 0.845 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.590 6.384 3.926 8.310 hybrid contribution -1.054 -0.600 -0.013 1.212 sum -4.643 5.785 3.913 8.387 Atomic orbital electron populations 1.22729 0.81970 1.02372 0.99629 1.88080 1.18830 1.24507 1.94385 1.22861 0.94689 0.84689 0.95036 1.22143 1.01467 0.99424 0.99351 1.22780 0.92240 1.01412 0.84443 1.49054 1.21503 1.61044 1.05000 1.20592 0.80732 0.74085 0.86321 1.90542 1.24342 1.43632 1.83793 1.17807 0.94416 0.96215 0.87255 0.93003 1.20566 0.96221 0.95739 1.44981 0.91801 1.24963 0.95924 0.97805 0.94221 1.70020 1.30166 1.12206 1.34727 0.86791 0.83978 0.79414 0.78760 1.20054 1.21185 1.20030 1.19873 0.93328 0.94469 0.94281 1.21429 0.99720 0.93935 0.92471 1.21069 0.94316 1.00154 1.01148 1.20792 0.96703 0.97468 1.01169 1.20772 0.98287 0.97745 0.99303 1.20882 0.93758 1.00271 0.98362 1.23450 0.87570 0.96112 0.96771 0.93831 0.90138 0.94187 0.91056 0.91712 0.91669 0.90733 0.90126 0.92299 0.84548 0.87949 0.88084 0.87975 0.88122 0.90972 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.36 101.05 1.05 1.48 16 2 O -0.34 -6.39 10.72 -35.23 -0.38 -6.77 16 3 C 0.07 1.09 1.49 -89.97 -0.13 0.95 16 4 C -0.17 -1.84 9.02 37.16 0.34 -1.50 16 5 C 0.12 2.07 8.04 -8.51 -0.07 2.00 16 6 N -0.63 -13.67 3.63 -185.04 -0.67 -14.34 16 7 C 0.59 15.06 5.62 -10.99 -0.06 14.99 16 8 O -0.55 -15.86 15.93 5.55 0.09 -15.78 16 9 C 0.06 1.59 2.55 -94.08 -0.24 1.35 16 10 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 11 C -0.54 -13.50 6.44 -34.44 -0.22 -13.72 16 12 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 13 C 0.08 2.03 3.19 -17.82 -0.06 1.98 16 14 N -0.84 -23.56 10.42 55.43 0.58 -22.98 16 15 Si 0.88 20.20 29.54 -169.99 -5.02 15.18 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 19 C -0.02 -0.46 4.50 -104.63 -0.47 -0.93 16 20 C -0.06 -1.42 8.01 -39.59 -0.32 -1.73 16 21 C -0.15 -3.23 10.05 -39.59 -0.40 -3.63 16 22 C -0.14 -2.89 10.05 -39.58 -0.40 -3.28 16 23 C -0.14 -2.95 10.05 -39.58 -0.40 -3.34 16 24 C -0.11 -2.62 8.74 -39.58 -0.35 -2.96 16 25 C 0.09 1.49 7.55 -8.38 -0.06 1.42 16 26 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.04 0.46 6.37 -51.93 -0.33 0.13 16 29 H 0.07 0.66 7.89 -51.93 -0.41 0.26 16 30 H 0.06 0.65 6.13 -51.93 -0.32 0.33 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 33 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.14 3.52 4.97 -52.48 -0.26 3.26 16 36 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 37 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 39 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.07 1.01 7.93 -51.93 -0.41 0.60 16 41 H 0.09 1.74 7.16 -51.93 -0.37 1.37 16 LS Contribution 334.81 15.07 5.05 5.05 Total: -1.00 -32.43 334.81 -8.03 -40.46 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.87 Total: 6.11 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.79 Total: -6.93 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.09 Total: -37.33 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.29 Total: -22.54 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.43 -8.03 -40.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567180044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.369 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds