Wall clock time and date at job start Tue Mar 31 2020 07:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00043 * 2 1 4 4 C 1.52997 * 113.41839 * 46.79575 * 3 2 1 5 5 C 1.53499 * 114.20626 * 179.97438 * 3 2 1 6 6 N 1.47069 * 87.98722 * 87.51763 * 5 3 2 7 7 C 1.34780 * 136.05969 * 207.09124 * 6 5 3 8 8 O 1.21289 * 119.99603 * 359.97438 * 7 6 5 9 9 C 1.50693 * 120.00214 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.47017 * 59.99660 * 9 7 6 11 11 C 1.50696 * 109.47115 * 299.99973 * 9 7 6 12 12 H 1.07998 * 120.00476 * 125.77241 * 11 9 7 13 13 C 1.37888 * 119.99740 * 305.76909 * 11 9 7 14 14 N 1.31509 * 120.00234 * 5.09699 * 13 11 9 15 15 Si 1.86803 * 119.99653 * 185.09657 * 13 11 9 16 16 H 1.48499 * 109.47471 * 60.00206 * 15 13 11 17 17 H 1.48506 * 109.46667 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47149 * 299.99715 * 15 13 11 19 19 C 1.50699 * 109.47227 * 179.97438 * 9 7 6 20 20 C 1.38233 * 120.00471 * 115.07767 * 19 9 7 21 21 C 1.38227 * 120.00524 * 179.97438 * 20 19 9 22 22 C 1.38236 * 119.99604 * 359.97438 * 21 20 19 23 23 C 1.38232 * 120.00166 * 0.06831 * 22 21 20 24 24 C 1.38234 * 119.99659 * 295.05433 * 19 9 7 25 25 C 1.47066 * 87.88214 * 27.34103 * 6 5 3 26 26 H 1.09008 * 109.46948 * 60.00379 * 1 2 3 27 27 H 1.09004 * 109.47448 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47195 * 300.00855 * 1 2 3 29 29 H 1.08999 * 109.47121 * 193.20547 * 4 3 2 30 30 H 1.09003 * 109.46803 * 313.19896 * 4 3 2 31 31 H 1.08996 * 109.47347 * 73.19715 * 4 3 2 32 32 H 1.09004 * 113.46505 * 332.73731 * 5 3 2 33 33 H 1.09001 * 113.46988 * 202.29477 * 5 3 2 34 34 H 0.96991 * 120.00153 * 180.02562 * 14 13 11 35 35 H 1.08007 * 119.99387 * 359.97438 * 20 19 9 36 36 H 1.07998 * 120.00111 * 179.72642 * 21 20 19 37 37 H 1.08006 * 119.99940 * 179.97438 * 22 21 20 38 38 H 1.08007 * 120.00262 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.00435 * 359.97438 * 24 19 9 40 40 H 1.09001 * 113.46857 * 87.44497 * 25 6 5 41 41 H 1.09003 * 113.46810 * 217.87616 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.3795 2.2518 1.0234 5 6 3.5452 1.3109 0.0006 6 7 3.4944 1.2468 -1.4678 7 6 4.2945 0.7807 -2.4471 8 8 5.3541 0.2605 -2.1684 9 6 3.8726 0.9059 -3.8884 10 1 3.7376 1.9585 -4.1373 11 6 2.5745 0.1697 -4.0976 12 1 1.7281 0.6803 -4.5327 13 6 2.4674 -1.1559 -3.7336 14 7 3.4630 -1.7500 -3.1130 15 14 0.9078 -2.1079 -4.1221 16 1 0.6882 -2.1203 -5.5907 17 1 1.0435 -3.5024 -3.6296 18 1 -0.2483 -1.4579 -3.4541 19 6 4.9359 0.3127 -4.7764 20 6 4.6571 -0.8098 -5.5334 21 6 5.6322 -1.3537 -6.3484 22 6 6.8861 -0.7746 -6.4067 23 6 7.1652 0.3474 -5.6490 24 6 6.1900 0.8914 -4.8343 25 6 2.1892 1.9208 -1.3976 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 1.6955 3.2742 0.8158 30 1 0.2934 2.1868 0.9573 31 1 1.7001 1.9688 2.0259 32 1 3.9823 0.4237 0.4590 33 1 3.9758 2.2376 0.3799 34 1 3.3878 -2.6825 -2.8573 35 1 3.6773 -1.2619 -5.4881 36 1 5.4157 -2.2332 -6.9364 37 1 7.6482 -1.1997 -7.0431 38 1 8.1450 0.7996 -5.6943 39 1 6.4076 1.7689 -4.2435 40 1 2.2622 3.0083 -1.3869 41 1 1.4709 1.5534 -2.1305 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567180044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:28 Heat of formation + Delta-G solvation = -20.030168 kcal Electronic energy + Delta-G solvation = -24219.018713 eV Core-core repulsion = 20872.305658 eV Total energy + Delta-G solvation = -3346.713055 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.46560 -40.15417 -38.65483 -36.91624 -35.54965 -32.70635 -31.69928 -31.34782 -29.39006 -28.10832 -27.07350 -26.63719 -25.42384 -22.95335 -22.14441 -21.10348 -19.93248 -18.67210 -17.49996 -17.30480 -17.11452 -16.72587 -16.50572 -16.16341 -15.83740 -15.64251 -15.39226 -15.19132 -14.43158 -14.13117 -14.09281 -13.85292 -13.58645 -13.41837 -13.10843 -13.04214 -12.79437 -12.76084 -12.66692 -12.60488 -12.26664 -12.12640 -11.81458 -11.48978 -11.27096 -11.17093 -10.56458 -10.45995 -10.10484 -9.46487 -9.24236 -9.13005 -8.07969 -6.24705 0.79741 0.89951 1.38200 1.40506 1.47198 2.27823 2.37244 2.53568 2.72083 3.21168 3.28291 3.39145 3.97588 4.13591 4.27327 4.32715 4.41177 4.47198 4.47489 4.51956 4.57629 4.63252 4.72965 4.74295 4.81657 4.87192 4.91331 4.95251 4.99107 5.09781 5.12948 5.30687 5.39186 5.47435 5.55001 5.67809 5.83273 5.93439 5.96665 6.38925 6.42775 6.48795 6.77229 7.27773 7.41580 7.91101 8.91956 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017854 B = 0.007042 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.909769 B = 3975.333937 C = 5107.907904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.387 6.387 3 C 0.080 3.920 4 C -0.154 4.154 5 C 0.107 3.893 6 N -0.647 5.647 7 C 0.584 3.416 8 O -0.597 6.597 9 C 0.057 3.943 10 H 0.059 0.941 11 C -0.530 4.530 12 H 0.067 0.933 13 C 0.047 3.953 14 N -0.872 5.872 15 Si 0.932 3.068 16 H -0.267 1.267 17 H -0.297 1.297 18 H -0.262 1.262 19 C -0.045 4.045 20 C -0.085 4.085 21 C -0.155 4.155 22 C -0.138 4.138 23 C -0.141 4.141 24 C -0.131 4.131 25 C 0.084 3.916 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.121 0.879 34 H 0.254 0.746 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.220 8.697 4.069 10.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.306 6.306 3 C 0.039 3.961 4 C -0.212 4.212 5 C -0.016 4.016 6 N -0.382 5.382 7 C 0.377 3.623 8 O -0.478 6.478 9 C 0.036 3.964 10 H 0.077 0.923 11 C -0.568 4.568 12 H 0.085 0.915 13 C -0.157 4.157 14 N -0.506 5.506 15 Si 0.758 3.242 16 H -0.192 1.192 17 H -0.224 1.224 18 H -0.186 1.186 19 C -0.046 4.046 20 C -0.103 4.103 21 C -0.173 4.173 22 C -0.156 4.156 23 C -0.159 4.159 24 C -0.149 4.149 25 C -0.039 4.039 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.139 0.861 34 H 0.063 0.937 35 H 0.133 0.867 36 H 0.142 0.858 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.121 0.879 40 H 0.132 0.868 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.342 7.982 4.112 9.974 hybrid contribution -0.828 -1.030 -0.069 1.323 sum -5.169 6.952 4.043 9.560 Atomic orbital electron populations 1.22900 0.80007 1.02853 1.01259 1.88017 1.21212 1.26678 1.94655 1.22905 0.93229 0.84583 0.95385 1.22106 1.02027 0.99115 0.97938 1.23160 0.94517 1.01844 0.82060 1.49163 1.22485 1.60283 1.06257 1.20609 0.80555 0.73869 0.87258 1.90482 1.26494 1.46127 1.84670 1.17888 0.94499 0.96519 0.87480 0.92319 1.20718 0.96456 0.95770 1.43858 0.91516 1.25457 0.97888 0.98460 0.93877 1.70212 1.32114 1.11490 1.36813 0.86007 0.81584 0.77711 0.78915 1.19237 1.22351 1.18649 1.20003 0.94366 0.95331 0.94903 1.21372 0.99842 0.94736 0.94377 1.21372 0.94549 1.00752 1.00672 1.21227 0.96770 0.96776 1.00820 1.21203 0.99147 0.97586 0.97938 1.21041 0.93838 1.00771 0.99257 1.23770 0.84801 0.98130 0.97239 0.94026 0.90443 0.90547 0.88480 0.90132 0.90547 0.94001 0.86127 0.93660 0.86712 0.85773 0.84009 0.84452 0.87948 0.86810 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.36 113.37 1.17 1.88 16 2 O -0.39 -14.37 10.72 -148.98 -1.60 -15.96 16 3 C 0.08 2.40 1.49 -10.37 -0.02 2.39 16 4 C -0.15 -2.78 9.02 71.98 0.65 -2.13 16 5 C 0.11 3.81 8.04 83.17 0.67 4.48 16 6 N -0.65 -28.38 3.63 -858.20 -3.12 -31.50 16 7 C 0.58 30.78 5.62 87.65 0.49 31.27 16 8 O -0.60 -36.16 15.93 -3.06 -0.05 -36.20 16 9 C 0.06 2.91 2.55 -13.04 -0.03 2.88 16 10 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 11 C -0.53 -27.29 6.44 25.60 0.16 -27.13 16 12 H 0.07 3.30 7.82 -2.91 -0.02 3.28 16 13 C 0.05 2.51 3.19 84.66 0.27 2.78 16 14 N -0.87 -51.16 10.42 21.45 0.22 -50.93 16 15 Si 0.93 42.26 29.54 68.60 2.03 44.29 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 18 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 19 C -0.05 -2.30 4.50 -19.87 -0.09 -2.39 16 20 C -0.09 -4.28 8.01 22.27 0.18 -4.10 16 21 C -0.16 -6.66 10.05 22.27 0.22 -6.44 16 22 C -0.14 -5.26 10.05 22.27 0.22 -5.03 16 23 C -0.14 -5.57 10.05 22.27 0.22 -5.34 16 24 C -0.13 -6.03 8.74 22.27 0.19 -5.83 16 25 C 0.08 2.80 7.55 83.26 0.63 3.43 16 26 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.08 1.50 6.37 -2.39 -0.02 1.49 16 29 H 0.10 1.29 7.89 -2.39 -0.02 1.27 16 30 H 0.08 1.23 6.13 -2.39 -0.01 1.22 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.12 3.26 8.10 -2.39 -0.02 3.24 16 34 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.12 6.16 4.97 -2.91 -0.01 6.14 16 36 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 37 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 38 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 39 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 40 H 0.11 2.83 7.93 -2.39 -0.02 2.81 16 41 H 0.07 2.62 7.16 -2.39 -0.02 2.60 16 Total: -1.00 -74.94 334.81 3.46 -71.48 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 1.02 Total: 28.13 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 4.95 Total: -9.29 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -2.89 Total: -82.43 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -1.65 Total: -52.17 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -74.94 3.46 -71.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567180044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.446 kcal (2) G-P(sol) polarization free energy of solvation -74.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds