Wall clock time and date at job start Tue Mar 31 2020 07:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99936 * 2 1 4 4 C 1.52998 * 113.28627 * 313.06980 * 3 2 1 5 5 C 1.53495 * 114.20553 * 179.97438 * 3 2 1 6 6 N 1.47064 * 87.98623 * 220.34554 * 5 3 2 7 7 C 1.34773 * 136.06064 * 207.08294 * 6 5 3 8 8 O 1.21284 * 120.00018 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00342 * 180.02562 * 7 6 5 10 10 H 1.09006 * 109.47021 * 299.99873 * 9 7 6 11 11 C 1.50690 * 109.47440 * 59.99833 * 9 7 6 12 12 H 1.08005 * 120.00078 * 32.62319 * 11 9 7 13 13 C 1.37878 * 120.00231 * 212.62125 * 11 9 7 14 14 N 1.31522 * 119.99844 * 188.32169 * 13 11 9 15 15 Si 1.86800 * 119.99979 * 8.32050 * 13 11 9 16 16 H 1.48497 * 109.46938 * 275.31339 * 15 13 11 17 17 H 1.48503 * 109.47047 * 35.31612 * 15 13 11 18 18 H 1.48504 * 109.46890 * 155.31267 * 15 13 11 19 19 C 1.50701 * 109.47099 * 180.02562 * 9 7 6 20 20 C 1.38234 * 119.99669 * 293.81984 * 19 9 7 21 21 C 1.38242 * 119.99800 * 179.81246 * 20 19 9 22 22 C 1.38238 * 119.99966 * 0.39872 * 21 20 19 23 23 C 1.38240 * 119.99891 * 359.85990 * 22 21 20 24 24 C 1.38234 * 120.00058 * 114.10036 * 19 9 7 25 25 C 1.47068 * 87.88661 * 27.34620 * 6 5 3 26 26 H 1.09004 * 109.47094 * 299.99787 * 1 2 3 27 27 H 1.09004 * 109.47069 * 59.99614 * 1 2 3 28 28 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46987 * 286.93676 * 4 3 2 30 30 H 1.09002 * 109.46839 * 46.92940 * 4 3 2 31 31 H 1.08991 * 109.47371 * 166.93083 * 4 3 2 32 32 H 1.08998 * 113.46416 * 105.57186 * 5 3 2 33 33 H 1.08996 * 113.47096 * 335.12960 * 5 3 2 34 34 H 0.96999 * 119.99661 * 180.02562 * 14 13 11 35 35 H 1.07990 * 120.00393 * 0.02562 * 20 19 9 36 36 H 1.07998 * 119.99897 * 180.23527 * 21 20 19 37 37 H 1.08000 * 120.00163 * 179.83098 * 22 21 20 38 38 H 1.07999 * 120.00150 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.00222 * 359.97438 * 24 19 9 40 40 H 1.09003 * 113.46891 * 87.43071 * 25 6 5 41 41 H 1.08998 * 113.47015 * 217.87702 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.3795 2.2483 -1.0266 5 6 3.5452 1.3110 0.0006 6 7 3.4891 2.4311 0.9519 7 6 4.2832 3.4712 1.2744 8 8 5.3404 3.6276 0.7008 9 6 3.8578 4.4398 2.3476 10 1 2.9150 4.9068 2.0625 11 6 3.6791 3.7011 3.6488 12 1 4.3015 2.8480 3.8754 13 6 2.7211 4.1143 4.5502 14 7 2.6723 3.5779 5.7501 15 14 1.4925 5.4360 4.0673 16 1 2.0911 6.7756 4.2962 17 1 1.1451 5.2879 2.6311 18 1 0.2647 5.2951 4.8907 19 6 4.9141 5.5018 2.5132 20 6 6.1640 5.1638 2.9971 21 6 7.1343 6.1373 3.1454 22 6 6.8518 7.4502 2.8174 23 6 5.6001 7.7891 2.3385 24 6 4.6312 6.8149 2.1866 25 6 2.1880 1.9132 1.4012 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7001 1.9618 -2.0282 30 1 0.2934 2.1834 -0.9604 31 1 1.6954 3.2713 -0.8227 32 1 3.9786 1.5807 -0.9624 33 1 3.9824 0.4055 0.4214 34 1 1.9981 3.8684 6.3841 35 1 6.3838 4.1387 3.2561 36 1 8.1120 5.8726 3.5199 37 1 7.6089 8.2113 2.9358 38 1 5.3792 8.8148 2.0827 39 1 3.6533 7.0796 1.8124 40 1 2.2674 1.1664 2.1913 41 1 1.4652 2.6959 1.6314 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567180045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:31 Heat of formation + Delta-G solvation = -10.355251 kcal Electronic energy + Delta-G solvation = -23596.732092 eV Core-core repulsion = 20250.438573 eV Total energy + Delta-G solvation = -3346.293519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.40815 -38.83142 -37.52938 -35.98177 -33.64899 -31.51432 -30.27533 -30.12021 -28.28821 -27.31485 -26.02810 -25.51108 -23.42308 -21.84185 -21.03174 -19.79089 -18.17233 -17.26783 -16.76122 -16.22859 -16.11270 -15.56041 -15.19139 -14.64056 -14.62997 -14.29823 -13.91611 -13.48258 -13.30843 -13.01049 -12.77094 -12.63167 -12.42685 -12.23557 -12.10545 -12.01463 -11.80217 -11.55981 -11.29693 -11.08090 -11.05843 -10.46301 -10.39207 -10.26947 -9.96632 -9.58566 -9.50398 -8.97682 -8.73545 -8.15113 -8.11938 -7.81901 -6.32295 -4.34768 2.15932 2.22521 3.10843 3.17343 3.22265 3.28102 3.45907 3.96426 4.19245 4.42236 4.60938 4.76148 4.98917 5.05767 5.29140 5.40433 5.45184 5.56277 5.59296 5.62840 5.69549 5.75474 5.77606 5.79822 5.88771 5.93960 6.00074 6.04491 6.21210 6.27998 6.31795 6.45118 6.47020 6.77055 6.85951 7.17805 7.21396 7.26289 7.27159 7.59952 7.81145 8.17970 8.35922 8.67781 8.99787 9.25909 10.79000 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.006170 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.111684 B = 4536.648592 C = 5430.978285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.061 3.939 4 C -0.154 4.154 5 C 0.120 3.880 6 N -0.632 5.632 7 C 0.568 3.432 8 O -0.556 6.556 9 C 0.030 3.970 10 H 0.067 0.933 11 C -0.507 4.507 12 H 0.081 0.919 13 C 0.088 3.912 14 N -0.880 5.880 15 Si 0.861 3.139 16 H -0.266 1.266 17 H -0.264 1.264 18 H -0.283 1.283 19 C -0.029 4.029 20 C -0.071 4.071 21 C -0.129 4.129 22 C -0.142 4.142 23 C -0.129 4.129 24 C -0.135 4.135 25 C 0.102 3.898 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.269 0.731 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.104 -0.979 -9.834 10.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.285 6.285 3 C 0.021 3.979 4 C -0.211 4.211 5 C -0.003 4.003 6 N -0.369 5.369 7 C 0.361 3.639 8 O -0.434 6.434 9 C 0.009 3.991 10 H 0.085 0.915 11 C -0.545 4.545 12 H 0.099 0.901 13 C -0.117 4.117 14 N -0.515 5.515 15 Si 0.688 3.312 16 H -0.191 1.191 17 H -0.190 1.190 18 H -0.209 1.209 19 C -0.030 4.030 20 C -0.089 4.089 21 C -0.147 4.147 22 C -0.160 4.160 23 C -0.147 4.147 24 C -0.153 4.153 25 C -0.022 4.022 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.111 0.889 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.383 -0.871 -9.871 10.471 hybrid contribution -0.973 0.850 0.149 1.301 sum -4.356 -0.021 -9.722 10.653 Atomic orbital electron populations 1.22778 0.81258 1.02544 1.00393 1.87928 1.19748 1.26029 1.94782 1.23354 0.94351 0.84045 0.96194 1.21949 1.00995 0.99783 0.98390 1.22838 0.92445 0.90594 0.94468 1.49030 1.22723 1.25230 1.39918 1.20834 0.81764 0.79756 0.81561 1.90617 1.23139 1.75131 1.54493 1.18421 0.94630 0.91357 0.94686 0.91499 1.20461 1.20395 1.15110 0.98505 0.90096 1.24934 0.96951 0.95448 0.94375 1.69878 1.34407 1.42484 1.04770 0.87053 0.81706 0.83618 0.78855 1.19076 1.18957 1.20933 1.20047 0.94790 0.93841 0.94288 1.20845 0.92507 0.99090 0.96473 1.21034 0.98977 0.93362 1.01327 1.20867 0.96723 0.96155 1.02296 1.20874 0.93973 0.98361 1.01484 1.20947 0.98851 0.93326 1.02184 1.23471 0.85168 0.97802 0.95755 0.93602 0.93704 0.89737 0.91380 0.91421 0.90684 0.90385 0.89504 0.92122 0.86510 0.87077 0.87291 0.87244 0.87500 0.88857 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.36 101.05 1.05 1.32 16 2 O -0.37 -4.93 10.71 -35.23 -0.38 -5.31 16 3 C 0.06 0.86 1.56 -89.97 -0.14 0.72 16 4 C -0.15 -1.84 8.97 37.16 0.33 -1.51 16 5 C 0.12 1.90 8.04 -8.50 -0.07 1.83 16 6 N -0.63 -12.21 3.44 -185.02 -0.64 -12.85 16 7 C 0.57 12.85 7.29 -10.99 -0.08 12.77 16 8 O -0.56 -13.70 16.20 5.55 0.09 -13.61 16 9 C 0.03 0.71 1.85 -94.08 -0.17 0.53 16 10 H 0.07 1.53 4.83 -51.93 -0.25 1.27 16 11 C -0.51 -13.11 7.50 -34.44 -0.26 -13.37 16 12 H 0.08 2.33 8.06 -52.48 -0.42 1.90 16 13 C 0.09 2.32 5.47 -17.82 -0.10 2.22 16 14 N -0.88 -24.80 13.96 55.43 0.77 -24.02 16 15 Si 0.86 19.71 27.31 -169.99 -4.64 15.06 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.26 -5.61 6.41 56.52 0.36 -5.25 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 19 C -0.03 -0.65 4.30 -104.62 -0.45 -1.10 16 20 C -0.07 -1.59 8.31 -39.58 -0.33 -1.92 16 21 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 22 C -0.14 -2.53 10.05 -39.58 -0.40 -2.93 16 23 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 24 C -0.13 -2.79 9.67 -39.58 -0.38 -3.17 16 25 C 0.10 1.74 7.21 -8.36 -0.06 1.68 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.39 6.36 -51.93 -0.33 0.06 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.69 6.12 -51.93 -0.32 0.37 16 31 H 0.07 1.00 7.94 -51.93 -0.41 0.58 16 32 H 0.08 1.17 8.12 -51.93 -0.42 0.74 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.12 2.72 7.89 -52.49 -0.41 2.31 16 36 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.11 2.03 7.95 -52.49 -0.42 1.62 16 40 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -30.62 341.48 -7.47 -38.09 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.97 Total: 6.09 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -1.85 Total: -8.58 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.14 Total: -36.87 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.29 Total: -18.92 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.64 Total: 15.06 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.62 -7.47 -38.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567180045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.730 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds