Wall clock time and date at job start Tue Mar 31 2020 07:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 113.99936 * 2 1 4 4 C 1.52998 * 113.28627 * 313.06980 * 3 2 1 5 5 C 1.53495 * 114.20553 * 179.97438 * 3 2 1 6 6 N 1.47064 * 87.98623 * 220.34554 * 5 3 2 7 7 C 1.34773 * 136.06064 * 207.08294 * 6 5 3 8 8 O 1.21284 * 120.00018 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00342 * 180.02562 * 7 6 5 10 10 H 1.09006 * 109.47021 * 299.99873 * 9 7 6 11 11 C 1.50690 * 109.47440 * 59.99833 * 9 7 6 12 12 H 1.08005 * 120.00078 * 32.62319 * 11 9 7 13 13 C 1.37878 * 120.00231 * 212.62125 * 11 9 7 14 14 N 1.31522 * 119.99844 * 188.32169 * 13 11 9 15 15 Si 1.86800 * 119.99979 * 8.32050 * 13 11 9 16 16 H 1.48497 * 109.46938 * 275.31339 * 15 13 11 17 17 H 1.48503 * 109.47047 * 35.31612 * 15 13 11 18 18 H 1.48504 * 109.46890 * 155.31267 * 15 13 11 19 19 C 1.50701 * 109.47099 * 180.02562 * 9 7 6 20 20 C 1.38234 * 119.99669 * 293.81984 * 19 9 7 21 21 C 1.38242 * 119.99800 * 179.81246 * 20 19 9 22 22 C 1.38238 * 119.99966 * 0.39872 * 21 20 19 23 23 C 1.38240 * 119.99891 * 359.85990 * 22 21 20 24 24 C 1.38234 * 120.00058 * 114.10036 * 19 9 7 25 25 C 1.47068 * 87.88661 * 27.34620 * 6 5 3 26 26 H 1.09004 * 109.47094 * 299.99787 * 1 2 3 27 27 H 1.09004 * 109.47069 * 59.99614 * 1 2 3 28 28 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46987 * 286.93676 * 4 3 2 30 30 H 1.09002 * 109.46839 * 46.92940 * 4 3 2 31 31 H 1.08991 * 109.47371 * 166.93083 * 4 3 2 32 32 H 1.08998 * 113.46416 * 105.57186 * 5 3 2 33 33 H 1.08996 * 113.47096 * 335.12960 * 5 3 2 34 34 H 0.96999 * 119.99661 * 180.02562 * 14 13 11 35 35 H 1.07990 * 120.00393 * 0.02562 * 20 19 9 36 36 H 1.07998 * 119.99897 * 180.23527 * 21 20 19 37 37 H 1.08000 * 120.00163 * 179.83098 * 22 21 20 38 38 H 1.07999 * 120.00150 * 179.97438 * 23 22 21 39 39 H 1.07997 * 120.00222 * 359.97438 * 24 19 9 40 40 H 1.09003 * 113.46891 * 87.43071 * 25 6 5 41 41 H 1.08998 * 113.47015 * 217.87702 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.3795 2.2483 -1.0266 5 6 3.5452 1.3110 0.0006 6 7 3.4891 2.4311 0.9519 7 6 4.2832 3.4712 1.2744 8 8 5.3404 3.6276 0.7008 9 6 3.8578 4.4398 2.3476 10 1 2.9150 4.9068 2.0625 11 6 3.6791 3.7011 3.6488 12 1 4.3015 2.8480 3.8754 13 6 2.7211 4.1143 4.5502 14 7 2.6723 3.5779 5.7501 15 14 1.4925 5.4360 4.0673 16 1 2.0911 6.7756 4.2962 17 1 1.1451 5.2879 2.6311 18 1 0.2647 5.2951 4.8907 19 6 4.9141 5.5018 2.5132 20 6 6.1640 5.1638 2.9971 21 6 7.1343 6.1373 3.1454 22 6 6.8518 7.4502 2.8174 23 6 5.6001 7.7891 2.3385 24 6 4.6312 6.8149 2.1866 25 6 2.1880 1.9132 1.4012 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7001 1.9618 -2.0282 30 1 0.2934 2.1834 -0.9604 31 1 1.6954 3.2713 -0.8227 32 1 3.9786 1.5807 -0.9624 33 1 3.9824 0.4055 0.4214 34 1 1.9981 3.8684 6.3841 35 1 6.3838 4.1387 3.2561 36 1 8.1120 5.8726 3.5199 37 1 7.6089 8.2113 2.9358 38 1 5.3792 8.8148 2.0827 39 1 3.6533 7.0796 1.8124 40 1 2.2674 1.1664 2.1913 41 1 1.4652 2.6959 1.6314 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567180045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:30 Heat of formation + Delta-G solvation = -29.494715 kcal Electronic energy + Delta-G solvation = -23597.562042 eV Core-core repulsion = 20250.438573 eV Total energy + Delta-G solvation = -3347.123469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.81372 -40.36705 -39.04575 -37.27604 -35.54707 -33.37941 -31.65344 -31.54934 -29.73859 -28.54226 -27.33898 -26.83696 -25.24586 -23.39450 -22.52129 -21.14283 -19.66809 -19.19661 -18.23529 -17.76044 -17.55952 -16.96775 -16.40624 -16.23338 -15.97159 -15.84072 -15.35157 -15.10462 -14.69425 -14.43793 -14.34631 -14.13541 -13.97785 -13.77307 -13.53918 -13.21278 -13.02912 -12.97486 -12.79366 -12.69421 -12.28120 -12.05046 -12.03068 -11.66117 -11.48181 -11.45982 -10.93573 -10.75211 -10.48286 -9.70505 -9.66663 -9.40969 -8.37376 -6.44386 0.61328 0.67569 1.28485 1.34109 1.39395 1.66507 1.93010 2.27006 2.76678 2.91742 3.10039 3.24039 3.59751 3.84884 4.04495 4.10441 4.18173 4.30331 4.36192 4.43834 4.50333 4.51382 4.55268 4.57353 4.62941 4.69426 4.79122 4.81752 4.82448 4.86329 4.92687 4.97456 5.15805 5.20180 5.29117 5.37358 5.67293 5.71400 5.91750 6.16519 6.20287 6.28186 6.53685 6.73257 7.18741 7.26539 8.77745 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.006170 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.111684 B = 4536.648592 C = 5430.978285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.380 6.380 3 C 0.089 3.911 4 C -0.151 4.151 5 C 0.112 3.888 6 N -0.639 5.639 7 C 0.561 3.439 8 O -0.585 6.585 9 C 0.035 3.965 10 H 0.074 0.926 11 C -0.497 4.497 12 H 0.031 0.969 13 C 0.040 3.960 14 N -0.928 5.928 15 Si 0.917 3.083 16 H -0.263 1.263 17 H -0.237 1.237 18 H -0.279 1.279 19 C -0.059 4.059 20 C -0.104 4.104 21 C -0.133 4.133 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.150 4.150 25 C 0.093 3.907 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.271 0.729 35 H 0.085 0.915 36 H 0.134 0.866 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.122 0.878 40 H 0.076 0.924 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.357 1.153 -11.856 13.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.298 6.298 3 C 0.048 3.952 4 C -0.208 4.208 5 C -0.011 4.011 6 N -0.374 5.374 7 C 0.354 3.646 8 O -0.465 6.465 9 C 0.014 3.986 10 H 0.092 0.908 11 C -0.535 4.535 12 H 0.049 0.951 13 C -0.161 4.161 14 N -0.566 5.566 15 Si 0.740 3.260 16 H -0.188 1.188 17 H -0.160 1.160 18 H -0.204 1.204 19 C -0.060 4.060 20 C -0.122 4.122 21 C -0.151 4.151 22 C -0.152 4.152 23 C -0.141 4.141 24 C -0.168 4.168 25 C -0.031 4.031 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.152 0.848 37 H 0.170 0.830 38 H 0.169 0.831 39 H 0.140 0.860 40 H 0.095 0.905 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.663 1.225 -11.919 12.857 hybrid contribution -0.496 0.092 0.794 0.941 sum -5.159 1.317 -11.125 12.334 Atomic orbital electron populations 1.23057 0.79219 1.04236 1.01319 1.87917 1.21918 1.25232 1.94724 1.23054 0.93118 0.84753 0.94246 1.21971 1.02340 0.98178 0.98319 1.23064 0.94619 0.89276 0.94121 1.49076 1.23011 1.25060 1.40244 1.20709 0.81741 0.80726 0.81466 1.90574 1.24207 1.76212 1.55555 1.18321 0.95396 0.91668 0.93231 0.90835 1.20312 1.19321 1.13853 0.99984 0.95063 1.25664 0.98686 0.97748 0.93970 1.70013 1.35677 1.44734 1.06158 0.86149 0.79203 0.80461 0.80187 1.18812 1.16018 1.20408 1.20094 0.94852 0.94845 0.96239 1.20806 0.93994 0.98603 0.98838 1.21355 0.99213 0.93755 1.00794 1.21368 0.97641 0.96066 1.00171 1.21377 0.93324 0.99744 0.99651 1.21234 1.00430 0.92732 1.02437 1.23625 0.84133 0.97546 0.97766 0.93775 0.91597 0.87836 0.89525 0.89071 0.91988 0.89200 0.89527 0.92002 0.89690 0.84787 0.83010 0.83140 0.85979 0.90531 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.36 113.37 1.17 1.48 16 2 O -0.38 -9.57 10.71 -148.98 -1.60 -11.16 16 3 C 0.09 2.40 1.56 -10.37 -0.02 2.39 16 4 C -0.15 -3.22 8.97 71.98 0.65 -2.57 16 5 C 0.11 3.54 8.04 83.18 0.67 4.21 16 6 N -0.64 -25.41 3.44 -858.16 -2.96 -28.37 16 7 C 0.56 26.39 7.29 87.66 0.64 27.02 16 8 O -0.58 -29.98 16.20 -3.04 -0.05 -30.03 16 9 C 0.04 1.68 1.85 -13.03 -0.02 1.65 16 10 H 0.07 3.34 4.83 -2.38 -0.01 3.33 16 11 C -0.50 -27.14 7.50 25.60 0.19 -26.95 16 12 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 13 C 0.04 2.17 5.47 84.65 0.46 2.63 16 14 N -0.93 -54.56 13.96 21.45 0.30 -54.26 16 15 Si 0.92 40.36 27.31 68.60 1.87 42.24 16 16 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 17 H -0.24 -9.25 6.41 99.48 0.64 -8.61 16 18 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 19 C -0.06 -2.75 4.30 -19.87 -0.09 -2.84 16 20 C -0.10 -4.84 8.31 22.27 0.19 -4.65 16 21 C -0.13 -5.04 10.05 22.27 0.22 -4.81 16 22 C -0.13 -4.34 10.05 22.27 0.22 -4.12 16 23 C -0.12 -4.07 10.05 22.27 0.22 -3.85 16 24 C -0.15 -5.96 9.67 22.27 0.22 -5.74 16 25 C 0.09 3.23 7.21 83.27 0.60 3.83 16 26 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.90 6.36 -2.39 -0.02 0.89 16 28 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.52 6.12 -2.39 -0.01 1.50 16 31 H 0.06 1.52 7.94 -2.39 -0.02 1.50 16 32 H 0.09 2.64 8.12 -2.39 -0.02 2.62 16 33 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.08 4.34 7.89 -2.92 -0.02 4.31 16 36 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 37 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 38 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 39 H 0.12 4.34 7.95 -2.91 -0.02 4.32 16 40 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 41 H 0.08 2.62 8.13 -2.39 -0.02 2.60 16 Total: -1.00 -70.45 341.48 3.85 -66.61 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.94 Total: 27.29 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 5.33 Total: -12.31 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -2.66 Total: -82.63 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -1.64 Total: -41.19 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 1.87 Total: 42.24 kcal Total: -70.45 3.85 -66.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567180045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.111 kcal (2) G-P(sol) polarization free energy of solvation -70.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds