Wall clock time and date at job start Tue Mar 31 2020 06:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 120.00130 * 2 1 4 4 N 1.46901 * 109.47152 * 124.99998 * 3 2 1 5 5 C 1.46895 * 111.00061 * 287.72114 * 4 3 2 6 6 C 1.50703 * 109.47313 * 291.31124 * 5 4 3 7 7 H 1.08002 * 119.99950 * 5.57126 * 6 5 4 8 8 C 1.37874 * 120.00299 * 185.58134 * 6 5 4 9 9 N 1.31514 * 120.00250 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99902 * 359.97438 * 8 6 5 11 11 H 1.48493 * 109.47358 * 90.00342 * 10 8 6 12 12 H 1.48505 * 109.47490 * 210.00564 * 10 8 6 13 13 H 1.48507 * 109.46983 * 330.00363 * 10 8 6 14 14 C 1.46901 * 110.99698 * 163.76783 * 4 3 2 15 15 H 1.08996 * 109.47270 * 63.95346 * 14 4 3 16 16 C 1.50697 * 109.47172 * 183.95359 * 14 4 3 17 17 O 1.20831 * 119.99770 * 359.97438 * 16 14 4 18 18 O 1.34231 * 120.00523 * 180.02562 * 16 14 4 19 19 C 1.50696 * 109.47290 * 303.95506 * 14 4 3 20 20 C 1.38256 * 120.00102 * 340.02104 * 19 14 4 21 21 C 1.38217 * 120.00395 * 179.97438 * 20 19 14 22 22 C 1.38255 * 119.99377 * 0.02562 * 21 20 19 23 23 C 1.38205 * 120.00480 * 359.70137 * 22 21 20 24 24 C 1.38211 * 120.00452 * 160.00480 * 19 14 4 25 25 C 1.50703 * 119.99680 * 359.97438 * 24 19 14 26 26 H 1.07999 * 120.00321 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00072 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99776 * 179.97438 * 2 1 3 29 29 H 1.09008 * 109.46875 * 4.99996 * 3 2 1 30 30 H 1.08995 * 109.47044 * 245.00243 * 3 2 1 31 31 H 1.09000 * 109.47313 * 51.30621 * 5 4 3 32 32 H 1.08995 * 109.47020 * 171.30885 * 5 4 3 33 33 H 0.96999 * 119.99884 * 179.97438 * 9 8 6 34 34 H 0.96698 * 117.00030 * 180.02562 * 18 16 14 35 35 H 1.08000 * 119.99688 * 0.02562 * 20 19 14 36 36 H 1.07995 * 119.99823 * 180.02562 * 21 20 19 37 37 H 1.08005 * 119.99508 * 179.97438 * 22 21 20 38 38 H 1.07995 * 120.00325 * 180.29413 * 23 22 21 39 39 H 1.09002 * 109.47311 * 90.00157 * 25 24 19 40 40 H 1.09007 * 109.47067 * 330.00415 * 25 24 19 41 41 H 1.09005 * 109.47339 * 210.00626 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2762 1.4959 2.4043 6 6 1.6814 2.8790 2.4696 7 1 1.7464 3.5357 1.6146 8 6 1.0544 3.3062 3.6208 9 7 0.5348 4.5131 3.6776 10 14 0.9416 2.1703 5.0994 11 1 2.1289 2.3698 5.9686 12 1 -0.2915 2.4784 5.8675 13 1 0.8975 0.7596 4.6377 14 6 4.0052 2.3856 0.9616 15 1 3.5169 3.3600 0.9631 16 6 4.9990 2.3200 2.0925 17 8 4.8788 1.4817 2.9545 18 8 6.0172 3.1932 2.1430 19 6 4.7217 2.1849 -0.3489 20 6 4.6972 0.9489 -0.9679 21 6 5.3538 0.7649 -2.1702 22 6 6.0355 1.8168 -2.7534 23 6 6.0553 3.0539 -2.1375 24 6 5.4030 3.2364 -0.9323 25 6 5.4289 4.5840 -0.2580 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 1.4798 0.7546 2.4688 32 1 2.9685 1.3585 3.2349 33 1 0.0934 4.8134 4.4874 34 1 6.6291 3.1116 2.8873 35 1 4.1642 0.1274 -0.5125 36 1 5.3343 -0.2005 -2.6539 37 1 6.5490 1.6729 -3.6927 38 1 6.5839 3.8768 -2.5955 39 1 6.2869 4.6386 0.4120 40 1 4.5115 4.7215 0.3145 41 1 5.5069 5.3665 -1.0128 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:42 Heat of formation + Delta-G solvation = -23.849914 kcal Electronic energy + Delta-G solvation = -24151.549472 eV Core-core repulsion = 20804.670780 eV Total energy + Delta-G solvation = -3346.878692 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43743 -38.89058 -37.08689 -35.43145 -33.38911 -32.77208 -32.32117 -30.91476 -27.78251 -27.34690 -26.41299 -24.02918 -22.27739 -21.92915 -20.74241 -19.68218 -19.05578 -17.53417 -17.14301 -16.57698 -15.78030 -15.49468 -15.28337 -14.74610 -14.38819 -14.12249 -13.87010 -13.61873 -13.30973 -13.00622 -12.87688 -12.57279 -12.43180 -12.05492 -11.92062 -11.71052 -11.51426 -11.17775 -11.02104 -10.97812 -10.73209 -10.63374 -10.45119 -10.38154 -10.00024 -9.73364 -9.49846 -8.91843 -8.58086 -8.42473 -8.34327 -7.37511 -6.14841 -4.14560 1.49422 1.61101 2.76369 2.86116 3.29989 3.36470 3.44131 3.49399 3.99421 4.39760 4.78358 4.97110 5.11017 5.13521 5.22376 5.29002 5.49237 5.55291 5.70833 5.74885 5.81460 5.91404 5.98410 6.00042 6.12728 6.14086 6.28862 6.36560 6.50005 6.54261 6.66882 6.71290 6.83140 6.91171 6.99351 7.12058 7.20131 7.23699 7.33242 7.52296 7.87182 7.96342 8.36373 8.52091 8.83790 9.49160 10.97314 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.006767 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.741518 B = 4137.008030 C = 4957.854438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 C 0.071 3.929 4 N -0.512 5.512 5 C 0.138 3.862 6 C -0.557 4.557 7 H 0.073 0.927 8 C 0.078 3.922 9 N -0.897 5.897 10 Si 0.876 3.124 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.262 1.262 14 C 0.140 3.860 15 H 0.107 0.893 16 C 0.498 3.502 17 O -0.494 6.494 18 O -0.518 6.518 19 C -0.085 4.085 20 C -0.086 4.086 21 C -0.139 4.139 22 C -0.117 4.117 23 C -0.131 4.131 24 C -0.061 4.061 25 C -0.120 4.120 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.058 0.942 33 H 0.264 0.736 34 H 0.400 0.600 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.956 -4.005 -10.607 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.148 4.148 3 C -0.056 4.056 4 N -0.237 5.237 5 C 0.012 3.988 6 C -0.596 4.596 7 H 0.091 0.909 8 C -0.125 4.125 9 N -0.534 5.534 10 Si 0.703 3.297 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.187 1.187 14 C 0.031 3.969 15 H 0.124 0.876 16 C 0.339 3.661 17 O -0.380 6.380 18 O -0.329 6.329 19 C -0.086 4.086 20 C -0.104 4.104 21 C -0.157 4.157 22 C -0.135 4.135 23 C -0.149 4.149 24 C -0.061 4.061 25 C -0.177 4.177 26 H 0.109 0.891 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.258 0.742 35 H 0.157 0.843 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.791 -4.532 -10.546 15.087 hybrid contribution -0.289 0.239 1.431 1.479 sum 9.502 -4.293 -9.115 13.849 Atomic orbital electron populations 1.23780 0.96074 1.01409 1.02080 1.22752 0.95443 0.98151 0.98462 1.21369 0.94872 0.95584 0.93772 1.62230 1.14343 1.42751 1.04328 1.20574 0.94056 0.96475 0.87680 1.21635 1.37734 0.99236 1.00964 0.90928 1.24876 0.94365 0.94754 0.98537 1.69920 1.37484 1.17616 1.28415 0.86821 0.77587 0.82224 0.83051 1.20137 1.21354 1.18686 1.19838 0.90664 0.99046 0.87385 0.87602 1.23015 0.79679 0.77384 0.86029 1.90625 1.71966 1.36175 1.39248 1.84575 1.38987 1.57076 1.52249 1.19497 0.99415 0.94049 0.95624 1.21281 0.97237 0.97273 0.94615 1.21099 0.99253 0.98883 0.96481 1.21083 0.99462 0.93330 0.99638 1.20915 1.00983 0.97420 0.95555 1.19793 0.96112 0.95689 0.94536 1.20926 1.03993 0.92490 1.00246 0.89146 0.88469 0.87791 0.92486 0.90508 0.94877 0.92463 0.92647 0.74232 0.84313 0.86378 0.86591 0.86332 0.89758 0.90930 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.16 14.32 29.02 0.42 -2.75 16 2 C -0.13 -2.19 8.84 -36.02 -0.32 -2.50 16 3 C 0.07 1.32 4.24 -4.97 -0.02 1.30 16 4 N -0.51 -10.52 3.49 -232.32 -0.81 -11.33 16 5 C 0.14 3.37 3.62 -4.98 -0.02 3.36 16 6 C -0.56 -15.17 7.98 -34.44 -0.27 -15.44 16 7 H 0.07 2.09 6.19 -52.49 -0.32 1.77 16 8 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 9 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 10 Si 0.88 22.10 27.36 -169.99 -4.65 17.45 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.26 -6.49 6.71 56.52 0.38 -6.11 16 14 C 0.14 2.70 1.31 -70.02 -0.09 2.61 16 15 H 0.11 2.25 4.56 -51.93 -0.24 2.02 16 16 C 0.50 9.71 7.35 36.00 0.26 9.97 16 17 O -0.49 -11.08 14.59 -18.75 -0.27 -11.35 16 18 O -0.52 -7.89 10.66 -39.26 -0.42 -8.31 16 19 C -0.09 -1.39 4.24 -104.63 -0.44 -1.84 16 20 C -0.09 -1.30 7.34 -39.58 -0.29 -1.59 16 21 C -0.14 -1.77 10.05 -39.58 -0.40 -2.17 16 22 C -0.12 -1.39 10.05 -39.59 -0.40 -1.79 16 23 C -0.13 -1.64 9.70 -39.59 -0.38 -2.03 16 24 C -0.06 -0.89 5.75 -104.62 -0.60 -1.49 16 25 C -0.12 -1.64 8.54 36.01 0.31 -1.34 16 26 H 0.09 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.10 1.66 7.84 -52.48 -0.41 1.25 16 28 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.06 1.20 6.37 -51.92 -0.33 0.87 16 30 H 0.08 1.30 5.03 -51.93 -0.26 1.04 16 31 H 0.03 0.84 6.75 -51.93 -0.35 0.48 16 32 H 0.06 1.51 4.60 -51.93 -0.24 1.27 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 34 H 0.40 4.34 9.10 45.56 0.41 4.75 16 35 H 0.14 2.18 6.53 -52.49 -0.34 1.83 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.08 1.10 6.75 -51.93 -0.35 0.75 16 40 H 0.07 1.14 6.13 -51.92 -0.32 0.82 16 41 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 LS Contribution 326.31 15.07 4.92 4.92 Total: -1.00 -31.91 326.31 -7.25 -39.16 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -4.44 Total: 9.12 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -2.35 Total: -13.57 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.04 Total: -37.41 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.69 Total: -19.66 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.65 Total: 17.45 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.91 -7.25 -39.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.312 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds