Wall clock time and date at job start Tue Mar 31 2020 06:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 120.00130 * 2 1 4 4 N 1.46901 * 109.47152 * 124.99998 * 3 2 1 5 5 C 1.46895 * 111.00061 * 287.72114 * 4 3 2 6 6 C 1.50703 * 109.47313 * 291.31124 * 5 4 3 7 7 H 1.08002 * 119.99950 * 5.57126 * 6 5 4 8 8 C 1.37874 * 120.00299 * 185.58134 * 6 5 4 9 9 N 1.31514 * 120.00250 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99902 * 359.97438 * 8 6 5 11 11 H 1.48493 * 109.47358 * 90.00342 * 10 8 6 12 12 H 1.48505 * 109.47490 * 210.00564 * 10 8 6 13 13 H 1.48507 * 109.46983 * 330.00363 * 10 8 6 14 14 C 1.46901 * 110.99698 * 163.76783 * 4 3 2 15 15 H 1.08996 * 109.47270 * 63.95346 * 14 4 3 16 16 C 1.50697 * 109.47172 * 183.95359 * 14 4 3 17 17 O 1.20831 * 119.99770 * 359.97438 * 16 14 4 18 18 O 1.34231 * 120.00523 * 180.02562 * 16 14 4 19 19 C 1.50696 * 109.47290 * 303.95506 * 14 4 3 20 20 C 1.38256 * 120.00102 * 340.02104 * 19 14 4 21 21 C 1.38217 * 120.00395 * 179.97438 * 20 19 14 22 22 C 1.38255 * 119.99377 * 0.02562 * 21 20 19 23 23 C 1.38205 * 120.00480 * 359.70137 * 22 21 20 24 24 C 1.38211 * 120.00452 * 160.00480 * 19 14 4 25 25 C 1.50703 * 119.99680 * 359.97438 * 24 19 14 26 26 H 1.07999 * 120.00321 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.00072 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99776 * 179.97438 * 2 1 3 29 29 H 1.09008 * 109.46875 * 4.99996 * 3 2 1 30 30 H 1.08995 * 109.47044 * 245.00243 * 3 2 1 31 31 H 1.09000 * 109.47313 * 51.30621 * 5 4 3 32 32 H 1.08995 * 109.47020 * 171.30885 * 5 4 3 33 33 H 0.96999 * 119.99884 * 179.97438 * 9 8 6 34 34 H 0.96698 * 117.00030 * 180.02562 * 18 16 14 35 35 H 1.08000 * 119.99688 * 0.02562 * 20 19 14 36 36 H 1.07995 * 119.99823 * 180.02562 * 21 20 19 37 37 H 1.08005 * 119.99508 * 179.97438 * 22 21 20 38 38 H 1.07995 * 120.00325 * 180.29413 * 23 22 21 39 39 H 1.09002 * 109.47311 * 90.00157 * 25 24 19 40 40 H 1.09007 * 109.47067 * 330.00415 * 25 24 19 41 41 H 1.09005 * 109.47339 * 210.00626 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2762 1.4959 2.4043 6 6 1.6814 2.8790 2.4696 7 1 1.7464 3.5357 1.6146 8 6 1.0544 3.3062 3.6208 9 7 0.5348 4.5131 3.6776 10 14 0.9416 2.1703 5.0994 11 1 2.1289 2.3698 5.9686 12 1 -0.2915 2.4784 5.8675 13 1 0.8975 0.7596 4.6377 14 6 4.0052 2.3856 0.9616 15 1 3.5169 3.3600 0.9631 16 6 4.9990 2.3200 2.0925 17 8 4.8788 1.4817 2.9545 18 8 6.0172 3.1932 2.1430 19 6 4.7217 2.1849 -0.3489 20 6 4.6972 0.9489 -0.9679 21 6 5.3538 0.7649 -2.1702 22 6 6.0355 1.8168 -2.7534 23 6 6.0553 3.0539 -2.1375 24 6 5.4030 3.2364 -0.9323 25 6 5.4289 4.5840 -0.2580 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6212 1.4026 -0.9314 31 1 1.4798 0.7546 2.4688 32 1 2.9685 1.3585 3.2349 33 1 0.0934 4.8134 4.4874 34 1 6.6291 3.1116 2.8873 35 1 4.1642 0.1274 -0.5125 36 1 5.3343 -0.2005 -2.6539 37 1 6.5490 1.6729 -3.6927 38 1 6.5839 3.8768 -2.5955 39 1 6.2869 4.6386 0.4120 40 1 4.5115 4.7215 0.3145 41 1 5.5069 5.3665 -1.0128 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588826586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:42 Heat of formation + Delta-G solvation = -44.447908 kcal Electronic energy + Delta-G solvation = -24152.442668 eV Core-core repulsion = 20804.670780 eV Total energy + Delta-G solvation = -3347.771888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.85869 -40.15769 -38.59070 -36.91266 -34.90340 -34.57128 -33.55263 -32.36159 -29.44318 -28.85139 -27.54509 -25.76460 -23.73535 -23.25175 -22.04044 -21.06177 -20.62376 -19.13402 -18.96816 -17.88866 -17.34223 -16.94382 -16.55578 -16.22510 -15.97744 -15.65158 -15.21157 -15.10402 -14.65382 -14.47544 -14.35446 -13.98222 -13.80890 -13.46721 -13.37094 -13.12915 -12.93540 -12.84812 -12.66404 -12.46700 -12.20112 -12.07971 -11.97970 -11.82813 -11.76201 -11.58203 -11.24707 -10.76531 -10.24790 -9.53682 -9.45558 -9.12596 -8.36862 -6.39321 0.40911 0.56577 1.26812 1.29582 1.32644 1.41625 1.42508 2.13151 2.28338 2.90171 2.99784 3.26566 3.70167 4.04371 4.12140 4.17960 4.23822 4.32417 4.41148 4.44995 4.58129 4.61257 4.74458 4.91740 4.93636 4.94043 4.99860 5.02440 5.09731 5.17459 5.21706 5.38850 5.42223 5.63696 5.68293 5.69199 5.75890 5.78515 5.87860 6.06719 6.17843 6.21727 6.29737 6.64247 7.10116 7.26967 8.78330 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.006767 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.741518 B = 4137.008030 C = 4957.854438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.141 4.141 3 C 0.078 3.922 4 N -0.506 5.506 5 C 0.151 3.849 6 C -0.547 4.547 7 H 0.043 0.957 8 C 0.025 3.975 9 N -0.937 5.937 10 Si 0.932 3.068 11 H -0.275 1.275 12 H -0.278 1.278 13 H -0.254 1.254 14 C 0.142 3.858 15 H 0.077 0.923 16 C 0.498 3.502 17 O -0.529 6.529 18 O -0.503 6.503 19 C -0.107 4.107 20 C -0.101 4.101 21 C -0.135 4.135 22 C -0.108 4.108 23 C -0.128 4.128 24 C -0.073 4.073 25 C -0.117 4.117 26 H 0.120 0.880 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.022 0.978 30 H 0.095 0.905 31 H 0.028 0.972 32 H 0.045 0.955 33 H 0.266 0.734 34 H 0.421 0.579 35 H 0.128 0.872 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.088 0.912 40 H 0.041 0.959 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.579 -5.475 -12.311 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.160 4.160 3 C -0.049 4.049 4 N -0.230 5.230 5 C 0.024 3.976 6 C -0.585 4.585 7 H 0.061 0.939 8 C -0.174 4.174 9 N -0.577 5.577 10 Si 0.756 3.244 11 H -0.201 1.201 12 H -0.203 1.203 13 H -0.177 1.177 14 C 0.032 3.968 15 H 0.094 0.906 16 C 0.340 3.660 17 O -0.418 6.418 18 O -0.316 6.316 19 C -0.108 4.108 20 C -0.119 4.119 21 C -0.153 4.153 22 C -0.126 4.126 23 C -0.146 4.146 24 C -0.074 4.074 25 C -0.173 4.173 26 H 0.138 0.862 27 H 0.098 0.902 28 H 0.142 0.858 29 H 0.040 0.960 30 H 0.113 0.887 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.282 0.718 35 H 0.146 0.854 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.164 0.836 39 H 0.107 0.893 40 H 0.060 0.940 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.440 -5.994 -12.265 17.811 hybrid contribution -0.694 0.781 1.816 2.095 sum 10.745 -5.213 -10.449 15.869 Atomic orbital electron populations 1.23938 0.95952 1.02032 1.00820 1.22817 0.95736 0.97856 0.99558 1.21355 0.94118 0.95578 0.93856 1.62194 1.14284 1.43157 1.03372 1.20279 0.93549 0.94226 0.89514 1.21808 1.36809 1.00149 0.99764 0.93885 1.25640 0.94400 0.96070 1.01325 1.70034 1.38988 1.19344 1.29367 0.85930 0.77763 0.80789 0.79872 1.20085 1.20344 1.17737 1.19771 0.90504 0.96951 0.89582 0.90604 1.23152 0.80182 0.77177 0.85455 1.90598 1.73181 1.37747 1.40302 1.84521 1.38374 1.55446 1.53233 1.19352 1.01096 0.95619 0.94703 1.21271 0.98347 0.96381 0.95878 1.21409 0.98093 1.00500 0.95305 1.21522 0.98208 0.92400 1.00450 1.21255 1.00107 0.98832 0.94396 1.19939 0.96574 0.95267 0.95609 1.20887 1.02518 0.93223 1.00657 0.86184 0.90172 0.85751 0.95991 0.88724 0.95434 0.93748 0.92463 0.71801 0.85371 0.83708 0.82996 0.83551 0.89313 0.94020 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.00 14.32 67.78 0.97 -5.03 16 2 C -0.14 -4.69 8.84 25.65 0.23 -4.47 16 3 C 0.08 2.96 4.24 85.56 0.36 3.33 16 4 N -0.51 -21.41 3.49 -888.92 -3.10 -24.51 16 5 C 0.15 7.60 3.62 85.56 0.31 7.91 16 6 C -0.55 -31.08 7.98 25.60 0.20 -30.88 16 7 H 0.04 2.66 6.19 -2.91 -0.02 2.64 16 8 C 0.02 1.46 5.47 84.65 0.46 1.92 16 9 N -0.94 -58.02 13.96 21.45 0.30 -57.72 16 10 Si 0.93 46.20 27.36 68.60 1.88 48.08 16 11 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.25 -12.11 6.71 99.48 0.67 -11.44 16 14 C 0.14 5.66 1.31 43.42 0.06 5.72 16 15 H 0.08 3.49 4.56 -2.39 -0.01 3.48 16 16 C 0.50 19.86 7.35 71.23 0.52 20.38 16 17 O -0.53 -24.17 14.59 21.95 0.32 -23.85 16 18 O -0.50 -15.33 10.66 -51.43 -0.55 -15.87 16 19 C -0.11 -3.49 4.24 -19.87 -0.08 -3.57 16 20 C -0.10 -2.92 7.34 22.27 0.16 -2.76 16 21 C -0.14 -3.00 10.05 22.27 0.22 -2.78 16 22 C -0.11 -2.10 10.05 22.27 0.22 -1.88 16 23 C -0.13 -2.79 9.70 22.27 0.22 -2.58 16 24 C -0.07 -2.06 5.75 -19.87 -0.11 -2.17 16 25 C -0.12 -3.15 8.54 71.24 0.61 -2.54 16 26 H 0.12 3.07 8.06 -2.91 -0.02 3.04 16 27 H 0.08 2.79 7.84 -2.91 -0.02 2.77 16 28 H 0.12 3.64 8.06 -2.91 -0.02 3.62 16 29 H 0.02 0.98 6.37 -2.38 -0.02 0.96 16 30 H 0.09 3.24 5.03 -2.39 -0.01 3.23 16 31 H 0.03 1.40 6.75 -2.39 -0.02 1.39 16 32 H 0.04 2.38 4.60 -2.39 -0.01 2.37 16 33 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 34 H 0.42 8.81 9.10 -74.06 -0.67 8.13 16 35 H 0.13 3.93 6.53 -2.91 -0.02 3.91 16 36 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 37 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 39 H 0.09 2.26 6.75 -2.39 -0.02 2.24 16 40 H 0.04 1.38 6.13 -2.38 -0.01 1.36 16 41 H 0.08 1.80 8.08 -2.38 -0.02 1.78 16 Total: -1.00 -71.37 326.31 3.55 -67.82 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.34 Total: 25.45 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 4.36 Total: -19.40 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -2.80 Total: -82.23 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.23 Total: -39.72 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.88 Total: 48.08 kcal Total: -71.37 3.55 -67.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.375 kcal (2) G-P(sol) polarization free energy of solvation -71.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds