Wall clock time and date at job start Tue Mar 31 2020 06:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38263 * 120.00238 * 2 1 4 4 C 1.38212 * 119.99820 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00513 * 359.75180 * 4 3 2 6 6 C 1.38224 * 119.99586 * 0.50228 * 5 4 3 7 7 C 1.50703 * 119.99861 * 179.76727 * 6 5 4 8 8 H 1.09000 * 109.47036 * 193.68594 * 7 6 5 9 9 N 1.46898 * 109.46931 * 313.69045 * 7 6 5 10 10 C 1.46910 * 110.99764 * 207.52227 * 9 7 6 11 11 C 1.52990 * 109.46992 * 179.59167 * 10 9 7 12 12 C 1.50700 * 115.56183 * 269.27989 * 11 10 9 13 13 H 1.08007 * 120.00134 * 142.28097 * 12 11 10 14 14 C 1.37873 * 119.99996 * 322.27974 * 12 11 10 15 15 N 1.31510 * 120.00067 * 343.22166 * 14 12 11 16 16 Si 1.86803 * 119.99808 * 163.22251 * 14 12 11 17 17 H 1.48492 * 109.47314 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46972 * 120.00474 * 16 14 12 19 19 H 1.48503 * 109.47024 * 239.99926 * 16 14 12 20 20 C 1.53008 * 117.50055 * 54.97150 * 11 10 9 21 21 C 1.53001 * 60.03088 * 107.47553 * 20 11 10 22 22 C 1.50698 * 109.46873 * 73.68760 * 7 6 5 23 23 O 1.20825 * 119.99918 * 239.99455 * 22 7 6 24 24 O 1.34229 * 120.00389 * 60.00055 * 22 7 6 25 25 C 1.38218 * 120.00049 * 179.97438 * 2 1 3 26 26 H 1.09007 * 109.47038 * 270.02617 * 1 2 3 27 27 H 1.09002 * 109.46979 * 30.02048 * 1 2 3 28 28 H 1.08997 * 109.47541 * 150.02526 * 1 2 3 29 29 H 1.07994 * 119.99820 * 0.02562 * 3 2 1 30 30 H 1.08006 * 119.99635 * 180.02562 * 4 3 2 31 31 H 1.07999 * 120.00342 * 180.26915 * 5 4 3 32 32 H 1.00896 * 111.00608 * 83.56733 * 9 7 6 33 33 H 1.08995 * 109.46981 * 59.58938 * 10 9 7 34 34 H 1.08996 * 109.46459 * 299.59188 * 10 9 7 35 35 H 0.96998 * 120.00183 * 185.05665 * 15 14 12 36 36 H 1.09001 * 117.49418 * 214.97642 * 20 11 10 37 37 H 1.09001 * 117.49835 * 359.97438 * 20 11 10 38 38 H 1.09005 * 117.49642 * 107.49881 * 21 20 11 39 39 H 1.09002 * 117.50007 * 252.52009 * 21 20 11 40 40 H 0.96694 * 117.00097 * 179.97438 * 24 22 7 41 41 H 1.07999 * 119.99616 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0063 6 6 3.5806 -1.1970 0.0009 7 6 4.3341 -2.5022 0.0019 8 1 3.6521 -3.3156 -0.2458 9 7 5.4119 -2.4460 -0.9947 10 6 5.7327 -3.7879 -1.4993 11 6 6.8498 -3.6878 -2.5399 12 6 6.3959 -3.5148 -3.9664 13 1 6.9489 -2.8713 -4.6348 14 6 5.2748 -4.1778 -4.4184 15 7 4.7944 -5.1961 -3.7388 16 14 4.4380 -3.6297 -5.9961 17 1 5.1692 -2.4703 -6.5672 18 1 4.4433 -4.7478 -6.9733 19 1 3.0367 -3.2359 -5.7021 20 6 8.1451 -2.9893 -2.1209 21 6 8.1183 -4.5090 -2.2960 22 6 4.9247 -2.7402 1.3677 23 8 6.1208 -2.8517 1.4976 24 8 4.1221 -2.8283 2.4400 25 6 2.1980 -1.1970 0.0005 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8902 -0.5134 29 1 1.6583 2.1326 0.0004 30 1 4.1205 2.1326 0.0010 31 1 5.3517 0.0000 0.0111 32 1 6.2319 -1.9966 -0.6156 33 1 4.8462 -4.2248 -1.9588 34 1 6.0615 -4.4177 -0.6727 35 1 4.0510 -5.7085 -4.0934 36 1 8.6688 -2.4047 -2.8773 37 1 8.2012 -2.6007 -1.1041 38 1 8.6246 -4.9242 -3.1676 39 1 8.1565 -5.1203 -1.3944 40 1 4.5470 -2.9820 3.2949 41 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605331502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:31 Heat of formation + Delta-G solvation = -40.509658 kcal Electronic energy + Delta-G solvation = -23224.968061 eV Core-core repulsion = 19877.366949 eV Total energy + Delta-G solvation = -3347.601113 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47716 -39.02538 -37.15759 -36.00099 -34.67197 -32.39373 -32.13874 -30.99171 -27.31299 -26.69184 -25.59966 -23.84818 -22.32135 -21.79288 -21.08427 -19.83846 -18.94921 -17.94047 -17.08452 -16.64105 -15.92998 -15.67380 -15.12909 -14.67335 -14.59191 -14.10204 -13.83924 -13.54959 -13.31165 -13.24473 -12.94056 -12.73077 -12.29019 -11.99682 -11.83575 -11.60538 -11.43338 -11.27268 -11.02797 -10.91332 -10.82590 -10.61658 -10.48541 -10.37263 -10.18825 -9.27119 -9.14577 -8.67871 -8.63587 -8.43425 -8.01725 -7.80312 -6.04162 -4.00667 1.45904 1.56043 2.33484 3.20082 3.30513 3.39654 3.45169 3.90328 4.42180 4.63932 4.87877 4.93794 5.01204 5.08768 5.27523 5.35834 5.41850 5.47771 5.58706 5.64153 5.67117 5.79972 5.85022 6.14002 6.17096 6.25138 6.43289 6.54327 6.59842 6.63082 6.67670 6.70898 6.74538 6.78810 6.90011 7.07564 7.14903 7.38684 7.62705 7.76743 7.95027 8.03011 8.10111 8.51045 8.92789 9.55958 11.00120 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012721 B = 0.006039 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.487502 B = 4635.061026 C = 5867.059255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.098 4.098 6 C -0.054 4.054 7 C 0.136 3.864 8 H 0.122 0.878 9 N -0.638 5.638 10 C 0.084 3.916 11 C 0.063 3.937 12 C -0.474 4.474 13 H 0.060 0.940 14 C 0.072 3.928 15 N -0.881 5.881 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.287 1.287 19 H -0.281 1.281 20 C -0.208 4.208 21 C -0.202 4.202 22 C 0.455 3.545 23 O -0.513 6.513 24 O -0.515 6.515 25 C -0.099 4.099 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.340 0.660 33 H 0.125 0.875 34 H 0.002 0.998 35 H 0.261 0.739 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.400 0.600 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.333 8.575 10.906 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.117 4.117 6 C -0.055 4.055 7 C 0.023 3.977 8 H 0.139 0.861 9 N -0.270 5.270 10 C -0.043 4.043 11 C 0.062 3.938 12 C -0.511 4.511 13 H 0.079 0.921 14 C -0.130 4.130 15 N -0.520 5.520 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.213 1.213 19 H -0.207 1.207 20 C -0.246 4.246 21 C -0.241 4.241 22 C 0.295 3.705 23 O -0.401 6.401 24 O -0.325 6.325 25 C -0.118 4.118 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.162 0.838 33 H 0.142 0.858 34 H 0.021 0.979 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.258 0.742 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.791 8.652 10.041 15.375 hybrid contribution 0.596 -0.348 0.526 0.868 sum -7.194 8.304 10.567 15.244 Atomic orbital electron populations 1.20759 0.91356 1.02717 1.02001 1.19807 0.95874 0.93023 1.00432 1.20970 0.94238 0.97264 1.01530 1.21049 0.94220 0.97769 1.00628 1.20944 1.00034 0.91814 0.98860 1.19331 0.93202 0.93166 0.99829 1.20405 0.96670 0.97297 0.83324 0.86085 1.61002 1.11356 1.23285 1.31355 1.22009 1.03207 0.85103 0.93961 1.18855 0.84009 0.96320 0.94592 1.20523 1.09636 1.27118 0.93829 0.92148 1.24906 0.96561 0.94342 0.97190 1.69840 1.26604 1.17095 1.38415 0.86560 0.79806 0.78793 0.82984 1.19690 1.21341 1.20734 1.22799 1.07191 0.95001 0.99579 1.23023 1.08565 0.92046 1.00440 1.25257 0.85767 0.71500 0.88025 1.90707 1.16939 1.46315 1.86139 1.84634 1.44742 1.83988 1.19112 1.20859 0.93073 0.97815 1.00007 0.91443 0.91765 0.91494 0.86454 0.86195 0.86162 0.83839 0.85763 0.97938 0.92897 0.90661 0.91555 0.90414 0.92006 0.74210 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.00 0.36 -0.71 16 2 C -0.09 -1.15 5.88 -104.62 -0.62 -1.77 16 3 C -0.12 -1.49 9.70 -39.58 -0.38 -1.87 16 4 C -0.12 -1.54 10.05 -39.59 -0.40 -1.94 16 5 C -0.10 -1.48 9.27 -39.58 -0.37 -1.85 16 6 C -0.05 -0.86 4.87 -104.62 -0.51 -1.37 16 7 C 0.14 2.35 2.71 -70.02 -0.19 2.16 16 8 H 0.12 2.08 7.55 -51.93 -0.39 1.68 16 9 N -0.64 -13.00 5.66 -109.19 -0.62 -13.62 16 10 C 0.08 1.99 5.19 -3.82 -0.02 1.97 16 11 C 0.06 1.58 1.99 -155.62 -0.31 1.27 16 12 C -0.47 -12.97 9.00 -34.44 -0.31 -13.28 16 13 H 0.06 1.67 7.87 -52.48 -0.41 1.26 16 14 C 0.07 1.94 5.06 -17.82 -0.09 1.85 16 15 N -0.88 -24.17 11.05 55.43 0.61 -23.56 16 16 Si 0.89 21.11 29.57 -169.99 -5.03 16.08 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.21 -4.69 9.44 -26.73 -0.25 -4.94 16 21 C -0.20 -4.80 9.88 -26.69 -0.26 -5.06 16 22 C 0.45 7.44 7.44 36.00 0.27 7.70 16 23 O -0.51 -9.75 16.26 -18.75 -0.30 -10.05 16 24 O -0.51 -6.63 13.34 -39.26 -0.52 -7.15 16 25 C -0.10 -1.41 9.32 -39.58 -0.37 -1.78 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 30 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.12 1.81 7.56 -52.49 -0.40 1.42 16 32 H 0.34 6.88 5.96 -39.29 -0.23 6.64 16 33 H 0.12 3.21 5.23 -51.93 -0.27 2.94 16 34 H 0.00 0.06 7.65 -51.93 -0.40 -0.34 16 35 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 36 H 0.07 1.66 8.14 -51.93 -0.42 1.23 16 37 H 0.07 1.41 7.38 -51.93 -0.38 1.03 16 38 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 39 H 0.06 1.41 8.03 -51.93 -0.42 1.00 16 40 H 0.40 3.38 9.10 45.56 0.41 3.79 16 41 H 0.12 1.58 7.99 -52.49 -0.42 1.16 16 LS Contribution 346.41 15.07 5.22 5.22 Total: -1.00 -30.50 346.41 -9.09 -39.59 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -5.00 Total: 13.10 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -3.45 Total: -19.61 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: -0.01 Total: -37.18 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.83 Total: -17.20 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.50 -9.09 -39.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605331502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.918 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds