Wall clock time and date at job start Tue Mar 31 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38263 * 120.00238 * 2 1 4 4 C 1.38212 * 119.99820 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00513 * 359.75180 * 4 3 2 6 6 C 1.38224 * 119.99586 * 0.50228 * 5 4 3 7 7 C 1.50703 * 119.99861 * 179.76727 * 6 5 4 8 8 H 1.09000 * 109.47036 * 193.68594 * 7 6 5 9 9 N 1.46898 * 109.46931 * 313.69045 * 7 6 5 10 10 C 1.46910 * 110.99764 * 207.52227 * 9 7 6 11 11 C 1.52990 * 109.46992 * 179.59167 * 10 9 7 12 12 C 1.50700 * 115.56183 * 269.27989 * 11 10 9 13 13 H 1.08007 * 120.00134 * 142.28097 * 12 11 10 14 14 C 1.37873 * 119.99996 * 322.27974 * 12 11 10 15 15 N 1.31510 * 120.00067 * 343.22166 * 14 12 11 16 16 Si 1.86803 * 119.99808 * 163.22251 * 14 12 11 17 17 H 1.48492 * 109.47314 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46972 * 120.00474 * 16 14 12 19 19 H 1.48503 * 109.47024 * 239.99926 * 16 14 12 20 20 C 1.53008 * 117.50055 * 54.97150 * 11 10 9 21 21 C 1.53001 * 60.03088 * 107.47553 * 20 11 10 22 22 C 1.50698 * 109.46873 * 73.68760 * 7 6 5 23 23 O 1.20825 * 119.99918 * 239.99455 * 22 7 6 24 24 O 1.34229 * 120.00389 * 60.00055 * 22 7 6 25 25 C 1.38218 * 120.00049 * 179.97438 * 2 1 3 26 26 H 1.09007 * 109.47038 * 270.02617 * 1 2 3 27 27 H 1.09002 * 109.46979 * 30.02048 * 1 2 3 28 28 H 1.08997 * 109.47541 * 150.02526 * 1 2 3 29 29 H 1.07994 * 119.99820 * 0.02562 * 3 2 1 30 30 H 1.08006 * 119.99635 * 180.02562 * 4 3 2 31 31 H 1.07999 * 120.00342 * 180.26915 * 5 4 3 32 32 H 1.00896 * 111.00608 * 83.56733 * 9 7 6 33 33 H 1.08995 * 109.46981 * 59.58938 * 10 9 7 34 34 H 1.08996 * 109.46459 * 299.59188 * 10 9 7 35 35 H 0.96998 * 120.00183 * 185.05665 * 15 14 12 36 36 H 1.09001 * 117.49418 * 214.97642 * 20 11 10 37 37 H 1.09001 * 117.49835 * 359.97438 * 20 11 10 38 38 H 1.09005 * 117.49642 * 107.49881 * 21 20 11 39 39 H 1.09002 * 117.50007 * 252.52009 * 21 20 11 40 40 H 0.96694 * 117.00097 * 179.97438 * 24 22 7 41 41 H 1.07999 * 119.99616 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0063 6 6 3.5806 -1.1970 0.0009 7 6 4.3341 -2.5022 0.0019 8 1 3.6521 -3.3156 -0.2458 9 7 5.4119 -2.4460 -0.9947 10 6 5.7327 -3.7879 -1.4993 11 6 6.8498 -3.6878 -2.5399 12 6 6.3959 -3.5148 -3.9664 13 1 6.9489 -2.8713 -4.6348 14 6 5.2748 -4.1778 -4.4184 15 7 4.7944 -5.1961 -3.7388 16 14 4.4380 -3.6297 -5.9961 17 1 5.1692 -2.4703 -6.5672 18 1 4.4433 -4.7478 -6.9733 19 1 3.0367 -3.2359 -5.7021 20 6 8.1451 -2.9893 -2.1209 21 6 8.1183 -4.5090 -2.2960 22 6 4.9247 -2.7402 1.3677 23 8 6.1208 -2.8517 1.4976 24 8 4.1221 -2.8283 2.4400 25 6 2.1980 -1.1970 0.0005 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3634 -0.8902 -0.5134 29 1 1.6583 2.1326 0.0004 30 1 4.1205 2.1326 0.0010 31 1 5.3517 0.0000 0.0111 32 1 6.2319 -1.9966 -0.6156 33 1 4.8462 -4.2248 -1.9588 34 1 6.0615 -4.4177 -0.6727 35 1 4.0510 -5.7085 -4.0934 36 1 8.6688 -2.4047 -2.8773 37 1 8.2012 -2.6007 -1.1041 38 1 8.6246 -4.9242 -3.1676 39 1 8.1565 -5.1203 -1.3944 40 1 4.5470 -2.9820 3.2949 41 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605331502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:30 Heat of formation + Delta-G solvation = -58.335988 kcal Electronic energy + Delta-G solvation = -23225.741069 eV Core-core repulsion = 19877.366949 eV Total energy + Delta-G solvation = -3348.374120 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.76767 -40.09764 -38.90624 -37.30704 -36.10057 -34.19259 -33.42553 -32.22363 -28.67190 -27.65858 -27.57846 -25.53410 -23.49230 -22.99545 -22.79404 -21.04792 -20.87880 -19.21557 -18.65777 -17.90283 -17.47853 -16.92586 -16.61346 -16.24466 -16.05801 -15.45862 -15.15070 -14.99692 -14.87042 -14.47598 -14.13940 -13.91159 -13.59789 -13.38239 -13.15063 -12.90653 -12.83860 -12.82893 -12.66991 -12.48053 -12.31649 -12.13394 -12.09433 -11.84591 -11.79524 -11.17409 -11.08443 -10.61335 -10.01027 -9.70202 -9.46147 -9.44825 -8.08665 -6.11461 0.39345 0.52801 1.03479 1.41760 1.46782 1.56892 2.00860 2.44959 2.78903 3.00758 3.25965 3.65409 3.72423 3.87571 4.06654 4.19669 4.24512 4.29436 4.33602 4.53910 4.55839 4.62235 4.70181 4.82568 4.86155 4.91016 4.91203 5.01473 5.01742 5.16176 5.19805 5.34931 5.43986 5.51421 5.58841 5.62361 5.66071 5.72552 6.02086 6.07440 6.16333 6.31632 6.53146 6.84837 6.86525 7.47018 8.95000 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012721 B = 0.006039 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.487502 B = 4635.061026 C = 5867.059255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.119 4.119 6 C -0.072 4.072 7 C 0.135 3.865 8 H 0.116 0.884 9 N -0.642 5.642 10 C 0.102 3.898 11 C 0.035 3.965 12 C -0.496 4.496 13 H 0.049 0.951 14 C 0.033 3.967 15 N -0.901 5.901 16 Si 0.948 3.052 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.278 1.278 20 C -0.185 4.185 21 C -0.205 4.205 22 C 0.465 3.535 23 O -0.543 6.543 24 O -0.502 6.502 25 C -0.114 4.114 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.148 0.852 30 H 0.143 0.857 31 H 0.111 0.889 32 H 0.340 0.660 33 H 0.101 0.899 34 H -0.009 1.009 35 H 0.264 0.736 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.423 0.577 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.867 10.230 11.393 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.137 4.137 6 C -0.073 4.073 7 C 0.023 3.977 8 H 0.134 0.866 9 N -0.274 5.274 10 C -0.026 4.026 11 C 0.034 3.966 12 C -0.533 4.533 13 H 0.067 0.933 14 C -0.167 4.167 15 N -0.540 5.540 16 Si 0.774 3.226 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.204 1.204 20 C -0.223 4.223 21 C -0.244 4.244 22 C 0.306 3.694 23 O -0.434 6.434 24 O -0.314 6.314 25 C -0.133 4.133 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.166 0.834 30 H 0.161 0.839 31 H 0.129 0.871 32 H 0.161 0.839 33 H 0.119 0.881 34 H 0.009 0.991 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.284 0.716 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.338 10.308 10.560 17.463 hybrid contribution 1.021 -0.837 0.462 1.399 sum -8.317 9.471 11.021 16.744 Atomic orbital electron populations 1.20819 0.89079 1.03542 1.03239 1.20203 0.97594 0.92517 0.98996 1.21370 0.94035 0.98423 1.00024 1.21352 0.94950 0.97846 0.99653 1.21011 0.99834 0.92597 1.00292 1.19277 0.93850 0.92384 1.01799 1.20336 0.95499 0.98450 0.83463 0.86648 1.60884 1.11861 1.21412 1.33243 1.21618 1.01517 0.86423 0.93039 1.19001 0.85185 0.98084 0.94322 1.20703 1.10417 1.27337 0.94887 0.93259 1.25516 0.96875 0.94236 1.00029 1.69938 1.26820 1.17584 1.39611 0.85667 0.78708 0.78342 0.79842 1.19721 1.20735 1.20388 1.22755 1.05107 0.94154 1.00272 1.22997 1.07916 0.93017 1.00424 1.24864 0.85214 0.70770 0.88530 1.90695 1.18112 1.47917 1.86661 1.84554 1.43992 1.83169 1.19673 1.21049 0.92594 0.99058 1.00589 0.89890 0.90199 0.91460 0.83384 0.83925 0.87093 0.83907 0.88103 0.99127 0.92685 0.90193 0.90271 0.90973 0.91502 0.71569 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.01 71.23 0.71 -1.07 16 2 C -0.09 -2.13 5.88 -19.87 -0.12 -2.25 16 3 C -0.12 -2.59 9.70 22.27 0.22 -2.37 16 4 C -0.12 -2.89 10.05 22.27 0.22 -2.67 16 5 C -0.12 -3.53 9.27 22.27 0.21 -3.32 16 6 C -0.07 -2.26 4.87 -19.86 -0.10 -2.36 16 7 C 0.14 4.74 2.71 43.42 0.12 4.85 16 8 H 0.12 4.10 7.55 -2.39 -0.02 4.08 16 9 N -0.64 -26.72 5.66 -499.36 -2.83 -29.55 16 10 C 0.10 4.94 5.19 86.30 0.45 5.38 16 11 C 0.03 1.78 1.99 -52.90 -0.11 1.67 16 12 C -0.50 -27.55 9.00 25.60 0.23 -27.32 16 13 H 0.05 2.77 7.87 -2.91 -0.02 2.74 16 14 C 0.03 1.82 5.06 84.65 0.43 2.25 16 15 N -0.90 -50.09 11.05 21.45 0.24 -49.85 16 16 Si 0.95 43.48 29.57 68.60 2.03 45.51 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 C -0.19 -8.34 9.44 30.60 0.29 -8.05 16 21 C -0.21 -9.82 9.88 30.62 0.30 -9.52 16 22 C 0.47 15.18 7.44 71.24 0.53 15.71 16 23 O -0.54 -20.72 16.26 21.97 0.36 -20.37 16 24 O -0.50 -12.33 13.34 -51.41 -0.69 -13.02 16 25 C -0.11 -3.15 9.32 22.27 0.21 -2.94 16 26 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 28 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 29 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.11 3.39 7.56 -2.91 -0.02 3.37 16 32 H 0.34 14.01 5.96 -89.70 -0.53 13.47 16 33 H 0.10 5.39 5.23 -2.39 -0.01 5.37 16 34 H -0.01 -0.47 7.65 -2.39 -0.02 -0.48 16 35 H 0.26 13.86 8.32 -92.71 -0.77 13.08 16 36 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.08 3.34 7.38 -2.39 -0.02 3.32 16 38 H 0.07 3.48 8.14 -2.38 -0.02 3.46 16 39 H 0.07 3.08 8.03 -2.39 -0.02 3.07 16 40 H 0.42 6.38 9.10 -74.06 -0.67 5.70 16 41 H 0.13 3.24 7.99 -2.91 -0.02 3.21 16 Total: -1.00 -65.27 346.41 2.55 -62.72 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.16 Total: 36.55 kcal Atomic # 6 Polarization: -35.59 SS G_CDS: 3.59 Total: -31.99 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -2.59 Total: -79.40 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.33 Total: -33.38 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -65.27 2.55 -62.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605331502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.386 kcal (2) G-P(sol) polarization free energy of solvation -65.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds