Wall clock time and date at job start Tue Mar 31 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38258 * 120.00183 * 2 1 4 4 C 1.38215 * 119.99994 * 179.73897 * 3 2 1 5 5 C 1.38256 * 119.99341 * 0.55436 * 4 3 2 6 6 C 1.38213 * 120.00588 * 359.70145 * 5 4 3 7 7 C 1.38215 * 119.99871 * 180.26897 * 2 1 3 8 8 C 1.50707 * 119.99903 * 0.02562 * 7 2 1 9 9 H 1.09000 * 109.46925 * 328.66178 * 8 7 2 10 10 N 1.46895 * 109.46699 * 208.66262 * 8 7 2 11 11 C 1.46903 * 110.99672 * 154.16376 * 10 8 7 12 12 C 1.53005 * 109.47045 * 185.77954 * 11 10 8 13 13 C 1.50702 * 115.55032 * 160.97080 * 12 11 10 14 14 H 1.07991 * 120.00373 * 145.91325 * 13 12 11 15 15 C 1.37880 * 119.99738 * 325.90869 * 13 12 11 16 16 N 1.31517 * 119.99904 * 165.24997 * 15 13 12 17 17 Si 1.86796 * 120.00111 * 345.25518 * 15 13 12 18 18 H 1.48501 * 109.47393 * 95.87507 * 17 15 13 19 19 H 1.48505 * 109.47047 * 215.87332 * 17 15 13 20 20 H 1.48501 * 109.47425 * 335.87009 * 17 15 13 21 21 C 1.52992 * 117.50038 * 15.25880 * 12 11 10 22 22 C 1.52997 * 117.49619 * 306.63561 * 12 11 10 23 23 C 1.50698 * 109.47280 * 88.66112 * 8 7 2 24 24 O 1.20827 * 120.00070 * 119.99766 * 23 8 7 25 25 O 1.34235 * 119.99903 * 300.00482 * 23 8 7 26 26 H 1.09003 * 109.47370 * 269.72879 * 1 2 3 27 27 H 1.09001 * 109.47203 * 149.72389 * 1 2 3 28 28 H 1.09008 * 109.46804 * 29.72922 * 1 2 3 29 29 H 1.07996 * 119.99585 * 359.97438 * 3 2 1 30 30 H 1.07992 * 119.99988 * 180.27658 * 4 3 2 31 31 H 1.08003 * 119.99340 * 179.72053 * 5 4 3 32 32 H 1.07995 * 119.99785 * 180.02562 * 6 5 4 33 33 H 1.00892 * 111.00071 * 278.11151 * 10 8 7 34 34 H 1.09000 * 109.46876 * 305.77280 * 11 10 8 35 35 H 1.09000 * 109.47673 * 65.77784 * 11 10 8 36 36 H 0.96999 * 120.00001 * 180.02562 * 16 15 13 37 37 H 1.09003 * 117.50117 * 0.02562 * 21 12 11 38 38 H 1.08995 * 117.50331 * 145.02347 * 21 12 11 39 39 H 1.09000 * 117.50084 * 214.98407 * 22 12 11 40 40 H 1.08997 * 117.49894 * 359.97438 * 22 12 11 41 41 H 0.96694 * 116.99544 * 180.02562 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0055 5 6 4.2716 -0.0001 -0.0007 6 6 3.5805 -1.1970 -0.0060 7 6 2.1980 -1.1970 -0.0056 8 6 1.4444 -2.5021 -0.0123 9 1 0.5024 -2.3804 0.5224 10 7 2.2518 -3.5370 0.6472 11 6 1.3982 -4.5934 1.2069 12 6 2.2584 -5.5739 2.0067 13 6 1.5141 -6.4361 2.9935 14 1 1.8429 -7.4472 3.1828 15 6 0.4134 -5.9340 3.6549 16 7 -0.4038 -6.7494 4.2849 17 14 0.0827 -4.0955 3.6559 18 1 -0.8812 -3.7653 2.5756 19 1 -0.4877 -3.6959 4.9675 20 1 1.3542 -3.3637 3.4255 21 6 3.6727 -5.1284 2.3832 22 6 3.4679 -6.1906 1.3013 23 6 1.1650 -2.9136 -1.4349 24 8 1.5944 -3.9614 -1.8561 25 8 0.4392 -2.1158 -2.2341 26 1 -0.3634 -0.0049 1.0277 27 1 -0.3634 -0.8875 -0.5181 28 1 -0.3633 0.8925 -0.5097 29 1 1.6583 2.1326 -0.0004 30 1 4.1204 2.1325 0.0100 31 1 5.3516 -0.0001 -0.0010 32 1 4.1205 -2.1323 -0.0104 33 1 2.9345 -3.9224 0.0121 34 1 0.6507 -4.1472 1.8628 35 1 0.8994 -5.1251 0.3965 36 1 -1.1783 -6.3962 4.7499 37 1 3.9904 -4.1365 2.0614 38 1 4.0653 -5.4587 3.3449 39 1 3.7255 -7.2198 1.5512 40 1 3.6505 -5.8982 0.2673 41 1 0.2861 -2.4224 -3.1382 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610530559.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:38 Heat of formation + Delta-G solvation = -21.797209 kcal Electronic energy + Delta-G solvation = -23761.589756 eV Core-core repulsion = 20414.800076 eV Total energy + Delta-G solvation = -3346.789680 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.81811 -39.20077 -37.67471 -36.19949 -34.72001 -32.84341 -32.20653 -31.00214 -27.85073 -26.75716 -26.35821 -23.92333 -22.66365 -21.38264 -21.25902 -20.45967 -19.03248 -18.17493 -17.34850 -17.03145 -16.08810 -15.95594 -15.43190 -15.11650 -14.71223 -14.44895 -13.87909 -13.81714 -13.55517 -13.14837 -12.96056 -12.79641 -12.77393 -12.40255 -12.21635 -11.95014 -11.82781 -11.62721 -11.12322 -10.98784 -10.89219 -10.78428 -10.43273 -10.35011 -9.75834 -9.41403 -9.28290 -8.80574 -8.72740 -8.59446 -8.42658 -8.13148 -6.17370 -4.08111 1.24967 1.40497 2.13302 2.97952 3.15566 3.38131 3.50208 3.73620 4.24474 4.37560 4.61894 4.79485 4.88039 4.92859 5.00504 5.15471 5.20153 5.28046 5.40936 5.53835 5.62369 5.69340 5.81039 5.84308 5.93375 5.98827 6.14333 6.16298 6.26703 6.39336 6.43397 6.49915 6.59963 6.64982 6.66845 6.87609 6.98007 7.11272 7.15594 7.31886 7.52028 7.76834 7.81182 8.50310 8.89080 9.47443 10.94672 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016427 B = 0.005882 C = 0.005735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.064111 B = 4759.101103 C = 4880.949862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.064 4.064 3 C -0.126 4.126 4 C -0.114 4.114 5 C -0.130 4.130 6 C -0.082 4.082 7 C -0.075 4.075 8 C 0.131 3.869 9 H 0.121 0.879 10 N -0.648 5.648 11 C 0.080 3.920 12 C 0.015 3.985 13 C -0.482 4.482 14 H 0.078 0.922 15 C 0.073 3.927 16 N -0.888 5.888 17 Si 0.882 3.118 18 H -0.288 1.288 19 H -0.300 1.300 20 H -0.244 1.244 21 C -0.194 4.194 22 C -0.197 4.197 23 C 0.456 3.544 24 O -0.508 6.508 25 O -0.511 6.511 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.352 0.648 34 H 0.066 0.934 35 H 0.040 0.960 36 H 0.265 0.735 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.738 16.663 -11.671 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.064 4.064 3 C -0.144 4.144 4 C -0.132 4.132 5 C -0.148 4.148 6 C -0.101 4.101 7 C -0.075 4.075 8 C 0.018 3.982 9 H 0.139 0.861 10 N -0.281 5.281 11 C -0.047 4.047 12 C 0.013 3.987 13 C -0.520 4.520 14 H 0.096 0.904 15 C -0.130 4.130 16 N -0.525 5.525 17 Si 0.713 3.287 18 H -0.217 1.217 19 H -0.228 1.228 20 H -0.168 1.168 21 C -0.232 4.232 22 C -0.234 4.234 23 C 0.296 3.704 24 O -0.396 6.396 25 O -0.322 6.322 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.174 0.826 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 3.812 16.785 -10.672 20.252 hybrid contribution -0.654 0.140 -1.316 1.477 sum 3.158 16.924 -11.988 20.979 Atomic orbital electron populations 1.20944 0.91210 1.03521 1.02473 1.19712 0.96107 0.92292 0.98307 1.20933 0.94231 0.97107 1.02127 1.21127 0.94287 0.97969 0.99815 1.21104 0.99868 0.92339 1.01531 1.21002 0.93332 0.98553 0.97168 1.19184 0.93783 0.91853 1.02718 1.20385 0.99022 0.92739 0.86028 0.86113 1.61053 1.15698 1.15308 1.36057 1.22023 0.95033 0.90584 0.97034 1.19231 0.86675 0.95683 0.97088 1.20366 1.10929 0.99526 1.21152 0.90363 1.25031 0.95048 0.97828 0.95115 1.69948 1.13163 1.34821 1.34527 0.86951 0.79347 0.87078 0.75330 1.21676 1.22835 1.16763 1.23092 1.04744 0.97296 0.98109 1.22809 1.07296 0.97858 0.95446 1.24930 0.74090 0.81612 0.89791 1.90735 1.49196 1.24207 1.75413 1.84612 1.67531 1.51971 1.28055 0.90995 0.90534 0.91308 0.86080 0.86244 0.86035 0.85396 0.82594 0.91690 0.94155 0.92476 0.89774 0.90395 0.90222 0.91315 0.73849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 9.19 36.00 0.33 -1.05 16 2 C -0.06 -0.80 5.88 -104.62 -0.62 -1.42 16 3 C -0.13 -1.39 9.70 -39.58 -0.38 -1.78 16 4 C -0.11 -1.21 10.05 -39.58 -0.40 -1.61 16 5 C -0.13 -1.51 10.05 -39.58 -0.40 -1.90 16 6 C -0.08 -1.12 9.32 -39.59 -0.37 -1.49 16 7 C -0.07 -1.06 4.95 -104.62 -0.52 -1.58 16 8 C 0.13 2.08 2.05 -70.02 -0.14 1.93 16 9 H 0.12 1.96 6.33 -51.93 -0.33 1.63 16 10 N -0.65 -11.77 3.65 -109.18 -0.40 -12.17 16 11 C 0.08 1.76 4.60 -3.82 -0.02 1.74 16 12 C 0.01 0.35 1.87 -155.66 -0.29 0.06 16 13 C -0.48 -13.66 9.57 -34.44 -0.33 -13.99 16 14 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 15 C 0.07 2.09 5.41 -17.82 -0.10 1.99 16 16 N -0.89 -26.89 13.96 55.43 0.77 -26.12 16 17 Si 0.88 21.74 24.32 -169.99 -4.13 17.61 16 18 H -0.29 -6.77 6.88 56.52 0.39 -6.38 16 19 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 20 H -0.24 -5.86 6.76 56.52 0.38 -5.48 16 21 C -0.19 -4.16 9.52 -26.74 -0.25 -4.42 16 22 C -0.20 -4.15 9.60 -26.73 -0.26 -4.41 16 23 C 0.46 6.83 7.48 36.00 0.27 7.10 16 24 O -0.51 -8.96 16.11 -18.75 -0.30 -9.26 16 25 O -0.51 -5.78 11.63 -39.27 -0.46 -6.24 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.88 4.92 -51.93 -0.26 0.63 16 28 H 0.07 0.61 8.08 -51.92 -0.42 0.19 16 29 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.13 1.72 6.98 -52.49 -0.37 1.36 16 33 H 0.35 6.17 5.88 -39.30 -0.23 5.94 16 34 H 0.07 1.51 1.60 -51.93 -0.08 1.43 16 35 H 0.04 0.90 7.77 -51.93 -0.40 0.50 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 37 H 0.08 1.66 7.03 -51.93 -0.37 1.29 16 38 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 39 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 40 H 0.07 1.32 7.33 -51.93 -0.38 0.94 16 41 H 0.40 2.86 9.10 45.56 0.41 3.27 16 LS Contribution 329.63 15.07 4.97 4.97 Total: -1.00 -32.26 329.63 -7.57 -39.83 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -4.55 Total: 12.20 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -3.47 Total: -20.81 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.38 Total: -38.29 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.76 Total: -15.50 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.13 Total: 17.61 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.26 -7.57 -39.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610530559.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.028 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds