Wall clock time and date at job start Tue Mar 31 2020 07:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46813 * 2 1 4 4 C 1.52999 * 109.46994 * 120.00306 * 2 1 3 5 5 N 1.46495 * 109.46990 * 175.00134 * 4 2 1 6 6 C 1.34775 * 120.00065 * 179.97438 * 5 4 2 7 7 O 1.21726 * 120.00073 * 359.97438 * 6 5 4 8 8 C 1.46258 * 120.00322 * 179.97438 * 6 5 4 9 9 C 1.35015 * 120.00185 * 179.97438 * 8 6 5 10 10 C 1.46966 * 119.99859 * 179.72327 * 9 8 6 11 11 C 1.40020 * 120.10099 * 359.72646 * 10 9 8 12 12 C 1.37601 * 119.89632 * 179.78802 * 11 10 9 13 13 C 1.39173 * 120.10087 * 0.48795 * 12 11 10 14 14 O 1.35568 * 119.90002 * 179.76457 * 13 12 11 15 15 C 1.34779 * 117.00070 * 174.42258 * 14 13 12 16 16 H 1.07996 * 120.00296 * 5.05680 * 15 14 13 17 17 C 1.38728 * 119.99880 * 185.05920 * 15 14 13 18 18 N 1.31504 * 119.99788 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99923 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47005 * 59.99702 * 19 17 15 21 21 H 1.48497 * 109.47002 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47212 * 299.99834 * 19 17 15 23 23 C 1.39182 * 120.20443 * 359.74007 * 13 12 11 24 24 C 1.37597 * 120.10073 * 0.02562 * 23 13 12 25 25 H 1.08997 * 109.47232 * 299.99455 * 1 2 3 26 26 H 1.08998 * 109.46997 * 59.99795 * 1 2 3 27 27 H 1.09000 * 109.47097 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46672 * 240.00036 * 2 1 3 29 29 H 1.08997 * 109.46777 * 60.00266 * 3 2 1 30 30 H 1.09002 * 109.46510 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47506 * 299.99893 * 3 2 1 32 32 H 1.09000 * 109.47095 * 54.99725 * 4 2 1 33 33 H 1.09000 * 109.46745 * 294.99829 * 4 2 1 34 34 H 0.97004 * 120.00076 * 359.97438 * 5 4 2 35 35 H 1.08007 * 119.99439 * 359.72456 * 8 6 5 36 36 H 1.07994 * 120.00134 * 359.72623 * 9 8 6 37 37 H 1.08001 * 120.05478 * 0.02562 * 11 10 9 38 38 H 1.08000 * 119.94685 * 180.22931 * 12 11 10 39 39 H 0.97004 * 119.99826 * 180.02562 * 18 17 15 40 40 H 1.07995 * 119.94818 * 179.97438 * 23 13 12 41 41 H 1.07996 * 120.05582 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1730 -1.4283 2.1911 7 8 3.5678 -1.8843 3.1438 8 6 5.6306 -1.5338 2.1323 9 6 6.3049 -2.1363 3.1349 10 6 7.7690 -2.2477 3.0729 11 6 8.4663 -1.7347 1.9723 12 6 9.8375 -1.8373 1.9207 13 6 10.5304 -2.4589 2.9553 14 8 11.8809 -2.5620 2.8979 15 6 12.5024 -3.0694 3.9809 16 1 11.9216 -3.4478 4.8090 17 6 13.8883 -3.1056 4.0318 18 7 14.5956 -2.6453 3.0232 19 14 14.7497 -3.8083 5.5330 20 1 14.3467 -5.2258 5.7168 21 1 16.2202 -3.7332 5.3403 22 1 14.3669 -3.0251 6.7352 23 6 9.8412 -2.9745 4.0490 24 6 8.4704 -2.8722 4.1116 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9562 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6053 -1.7198 1.2951 33 1 1.7516 -0.1584 2.1369 34 1 3.9823 -0.4628 0.4315 35 1 6.1672 -1.1332 1.2849 36 1 5.7684 -2.5365 3.9824 37 1 7.9291 -1.2558 1.1671 38 1 10.3765 -1.4386 1.0739 39 1 15.5646 -2.6710 3.0587 40 1 10.3830 -3.4563 4.8494 41 1 7.9363 -3.2729 4.9604 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045969878.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:48 Heat of formation + Delta-G solvation = -43.460526 kcal Electronic energy + Delta-G solvation = -21063.143599 eV Core-core repulsion = 17715.414527 eV Total energy + Delta-G solvation = -3347.729072 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.65730 -39.13119 -37.08415 -36.66978 -33.32751 -33.14221 -32.27348 -30.42871 -28.49720 -27.56688 -26.46272 -25.55756 -23.01392 -22.13214 -20.81587 -20.65605 -19.22440 -18.14193 -17.13387 -17.00304 -16.23833 -15.58484 -14.99703 -14.79425 -14.53281 -14.39411 -14.15691 -13.83490 -13.70749 -13.48312 -13.11790 -13.02031 -12.70125 -12.58738 -12.39950 -11.92411 -11.76068 -11.71951 -11.50180 -11.29551 -11.11538 -11.09808 -11.05073 -10.70311 -10.54490 -9.77056 -9.59722 -9.49855 -9.10371 -8.84007 -8.38037 -7.11024 -6.64954 -4.19884 1.08568 2.13709 2.57262 3.04149 3.05880 3.08155 3.26997 3.60657 3.82470 4.39434 4.50285 4.51834 4.66021 4.92445 5.02636 5.05129 5.16888 5.24274 5.27945 5.32357 5.44613 5.49212 5.54424 5.60078 5.65284 5.67570 5.72483 5.88007 5.93985 6.01555 6.12459 6.38308 6.47725 6.51176 6.61711 6.79556 6.92011 7.13247 7.23993 7.28515 7.57547 7.64207 7.80267 8.37138 8.79695 9.46714 10.51581 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.047838 B = 0.002210 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.165469 B =12668.474273 C =13138.587650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.125 3.875 5 N -0.734 5.734 6 C 0.554 3.446 7 O -0.560 6.560 8 C -0.283 4.283 9 C 0.038 3.962 10 C -0.199 4.199 11 C -0.043 4.043 12 C -0.200 4.200 13 C 0.167 3.833 14 O -0.162 6.162 15 C -0.394 4.394 16 H 0.097 0.903 17 C 0.042 3.958 18 N -0.852 5.852 19 Si 0.945 3.055 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.267 1.267 23 C -0.242 4.242 24 C -0.035 4.035 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.399 0.601 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.275 0.725 40 H 0.131 0.869 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.465 4.778 -5.100 20.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.207 4.207 4 C 0.001 3.999 5 N -0.385 5.385 6 C 0.346 3.654 7 O -0.441 6.441 8 C -0.304 4.304 9 C 0.018 3.982 10 C -0.200 4.200 11 C -0.061 4.061 12 C -0.219 4.219 13 C 0.110 3.890 14 O -0.063 6.063 15 C -0.469 4.469 16 H 0.114 0.886 17 C -0.165 4.165 18 N -0.485 5.485 19 Si 0.769 3.231 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.192 1.192 23 C -0.261 4.261 24 C -0.053 4.053 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.234 0.766 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.085 0.915 40 H 0.149 0.851 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.443 4.543 -4.676 20.507 hybrid contribution 0.687 -0.155 0.316 0.772 sum -18.756 4.388 -4.360 19.750 Atomic orbital electron populations 1.21762 0.94136 1.02173 1.02198 1.21366 0.96662 0.96776 0.98006 1.21874 1.01258 0.95489 1.02063 1.21359 0.80324 1.00445 0.97803 1.45882 1.07396 1.61069 1.24200 1.18425 0.88371 0.76943 0.81649 1.90773 1.70739 1.49012 1.33594 1.22441 0.92084 1.12406 1.03463 1.22283 0.92436 0.88160 0.95342 1.18468 0.91648 1.11298 0.98552 1.20879 0.92945 0.96144 0.96158 1.20150 0.93543 1.07775 1.00434 1.19613 0.84806 0.91520 0.93047 1.83901 1.13678 1.69468 1.39268 1.21428 0.89737 1.40166 0.95580 0.88589 1.25396 0.95384 0.96701 0.98980 1.70003 1.07261 1.41152 1.30070 0.85714 0.78287 0.79468 0.79664 1.19257 1.20085 1.19243 1.21100 0.94301 1.09357 1.01384 1.20993 0.93559 0.94592 0.96204 0.92326 0.92212 0.92353 0.90542 0.92400 0.92438 0.92435 0.91741 0.91688 0.76640 0.85931 0.85951 0.86425 0.86136 0.91548 0.85121 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.19 37.16 0.34 -0.48 16 2 C -0.11 -0.71 2.96 -90.62 -0.27 -0.98 16 3 C -0.15 -0.92 9.07 37.16 0.34 -0.59 16 4 C 0.12 1.17 5.06 -4.04 -0.02 1.15 16 5 N -0.73 -7.70 5.28 -61.76 -0.33 -8.03 16 6 C 0.55 7.93 7.74 -13.04 -0.10 7.83 16 7 O -0.56 -10.05 16.23 5.17 0.08 -9.96 16 8 C -0.28 -3.91 9.41 -37.51 -0.35 -4.27 16 9 C 0.04 0.58 9.45 -37.19 -0.35 0.23 16 10 C -0.20 -3.41 5.87 -105.02 -0.62 -4.03 16 11 C -0.04 -0.74 9.40 -39.15 -0.37 -1.10 16 12 C -0.20 -4.00 9.97 -39.47 -0.39 -4.39 16 13 C 0.17 3.84 6.66 -38.88 -0.26 3.58 16 14 O -0.16 -4.41 9.74 0.75 0.01 -4.40 16 15 C -0.39 -10.46 9.48 30.91 0.29 -10.17 16 16 H 0.10 2.34 5.18 -52.49 -0.27 2.07 16 17 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 18 N -0.85 -23.84 13.67 55.48 0.76 -23.09 16 19 Si 0.94 19.53 29.55 -169.99 -5.02 14.50 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 C -0.24 -5.03 9.14 -39.47 -0.36 -5.39 16 24 C -0.04 -0.63 9.78 -39.14 -0.38 -1.01 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.36 7.18 -51.93 -0.37 -0.01 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.40 3.18 7.63 -40.82 -0.31 2.87 16 35 H 0.12 1.44 6.07 -52.48 -0.32 1.12 16 36 H 0.12 1.88 7.52 -52.49 -0.39 1.49 16 37 H 0.12 1.63 6.16 -52.49 -0.32 1.31 16 38 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 349.39 15.07 5.27 5.27 Total: -1.00 -30.80 349.39 -7.48 -38.29 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.65 Total: 6.05 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -2.60 Total: -18.63 kcal Atomic # 7 Polarization: -31.54 SS G_CDS: 0.43 Total: -31.11 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.09 Total: -14.36 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.80 -7.48 -38.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045969878.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.173 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds