Wall clock time and date at job start Tue Mar 31 2020 05:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.70762 * 2 1 4 4 C 1.52873 * 109.61923 * 239.69478 * 2 1 3 5 5 O 1.42959 * 109.30106 * 188.11538 * 4 2 1 6 6 C 1.42961 * 114.16510 * 62.44794 * 5 4 2 7 7 C 1.53300 * 109.22367 * 297.41776 * 6 5 4 8 8 N 1.47154 * 108.38111 * 52.30771 * 7 6 5 9 9 C 1.34777 * 120.98360 * 129.44302 * 8 7 6 10 10 O 1.21544 * 120.00033 * 175.80016 * 9 8 7 11 11 C 1.47880 * 119.99770 * 355.79790 * 9 8 7 12 12 C 1.39924 * 120.02796 * 33.94813 * 11 9 8 13 13 C 1.38330 * 120.35744 * 179.71336 * 12 11 9 14 14 C 1.37751 * 120.41343 * 0.56117 * 13 12 11 15 15 C 1.40743 * 120.03787 * 359.71926 * 14 13 12 16 16 C 1.41438 * 120.17586 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99876 * 149.17237 * 16 15 14 18 18 C 1.39934 * 120.00421 * 329.17444 * 16 15 14 19 19 N 1.30826 * 120.00463 * 166.48813 * 18 16 15 20 20 Si 1.86800 * 119.99738 * 346.48930 * 18 16 15 21 21 H 1.48500 * 109.47497 * 93.38433 * 20 18 16 22 22 H 1.48502 * 109.47104 * 213.38631 * 20 18 16 23 23 H 1.48505 * 109.46995 * 333.38668 * 20 18 16 24 24 C 1.39001 * 120.02450 * 214.22323 * 11 9 8 25 25 H 1.09008 * 109.47260 * 307.32247 * 1 2 3 26 26 H 1.08987 * 109.47398 * 67.32721 * 1 2 3 27 27 H 1.09001 * 109.47219 * 187.32984 * 1 2 3 28 28 H 1.09002 * 109.47019 * 180.54110 * 3 2 1 29 29 H 1.09002 * 109.46829 * 300.53411 * 3 2 1 30 30 H 1.08999 * 109.47521 * 60.53467 * 3 2 1 31 31 H 1.09002 * 109.58141 * 68.10165 * 4 2 1 32 32 H 1.09002 * 109.40733 * 308.02150 * 4 2 1 33 33 H 1.09005 * 109.51227 * 177.49686 * 6 5 4 34 34 H 1.08993 * 109.55426 * 57.37322 * 6 5 4 35 35 H 1.09000 * 109.68204 * 292.58515 * 7 6 5 36 36 H 1.08994 * 109.68164 * 172.02652 * 7 6 5 37 37 H 1.07998 * 119.81975 * 359.97438 * 12 11 9 38 38 H 1.08006 * 119.79079 * 180.25895 * 13 12 11 39 39 H 1.07996 * 119.97601 * 179.74224 * 14 13 12 40 40 H 0.97000 * 120.00330 * 180.02562 * 19 18 16 41 41 H 1.07990 * 120.19988 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0460 1.4404 0.0000 4 6 2.0433 -0.7266 -1.2432 5 8 3.4602 -0.8893 -1.1442 6 6 3.8812 -1.6922 -0.0388 7 6 3.4630 -1.0100 1.2688 8 7 2.0256 -0.7039 1.1935 9 6 1.1869 -1.0627 2.1857 10 8 0.0175 -0.7345 2.1413 11 6 1.6896 -1.8556 3.3282 12 6 2.9946 -1.6623 3.7945 13 6 3.4698 -2.3961 4.8665 14 6 2.6683 -3.3335 5.4800 15 6 1.3548 -3.5460 5.0212 16 6 0.5292 -4.5074 5.6493 17 1 -0.5405 -4.3619 5.6817 18 6 1.0982 -5.6469 6.2289 19 7 0.3874 -6.3972 7.0310 20 14 2.8726 -6.0968 5.8571 21 1 3.7589 -5.5168 6.8979 22 1 3.0177 -7.5747 5.8509 23 1 3.2520 -5.5566 4.5268 24 6 0.8679 -2.7977 3.9361 25 1 -0.3634 0.6231 0.8173 26 1 -0.3633 0.3961 -0.9481 27 1 -0.3634 -1.0193 0.1311 28 1 3.1359 1.4359 -0.0097 29 1 1.6769 1.9585 -0.8852 30 1 1.6926 1.9530 0.8947 31 1 1.8052 -0.1425 -2.1322 32 1 1.5684 -1.7053 -1.3126 33 1 4.9654 -1.8028 -0.0611 34 1 3.4137 -2.6747 -0.1025 35 1 4.0285 -0.0872 1.3986 36 1 3.6524 -1.6785 2.1086 37 1 3.6328 -0.9332 3.3176 38 1 4.4773 -2.2364 5.2216 39 1 3.0480 -3.9054 6.3138 40 1 0.7820 -7.1869 7.4331 41 1 -0.1386 -2.9531 3.5769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068379787.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:31 Heat of formation + Delta-G solvation = -28.218975 kcal Electronic energy + Delta-G solvation = -23774.208131 eV Core-core repulsion = 20427.139983 eV Total energy + Delta-G solvation = -3347.068149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.76751 -38.44447 -37.41179 -35.00395 -34.28947 -33.30336 -30.57499 -30.11528 -28.79134 -27.24794 -26.30642 -25.51620 -23.40128 -22.85348 -20.84420 -20.58922 -18.74965 -17.60801 -16.56427 -16.22129 -16.17136 -15.64649 -15.39931 -15.22703 -14.72604 -14.49878 -14.06963 -13.74433 -13.29242 -12.95912 -12.84259 -12.74084 -12.40015 -12.27956 -12.09305 -11.86379 -11.79781 -11.71190 -11.25643 -11.12996 -11.09822 -10.79774 -10.62668 -10.38352 -10.11926 -9.88822 -9.77025 -9.34421 -8.73395 -8.36211 -7.91493 -7.76026 -7.03828 -4.62366 1.92421 2.42282 3.00141 3.04998 3.12682 3.18988 3.43668 3.75300 3.86911 4.36792 4.61849 4.79608 4.86523 5.01291 5.14392 5.20838 5.26354 5.33718 5.48938 5.51045 5.62557 5.72768 5.79612 5.81183 5.85627 5.88197 5.97018 6.01852 6.25507 6.28422 6.45179 6.56608 6.64767 6.78360 6.93051 7.02276 7.16414 7.30703 7.41290 7.63383 7.68736 7.89356 8.22125 8.45598 8.60065 8.65627 9.98342 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025309 B = 0.004741 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.054324 B = 5904.033772 C = 6337.482710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.134 3.866 3 C -0.150 4.150 4 C 0.059 3.941 5 O -0.382 6.382 6 C 0.045 3.955 7 C 0.038 3.962 8 N -0.606 5.606 9 C 0.569 3.431 10 O -0.537 6.537 11 C -0.101 4.101 12 C -0.237 4.237 13 C -0.080 4.080 14 C -0.223 4.223 15 C 0.086 3.914 16 C -0.440 4.440 17 H 0.094 0.906 18 C 0.081 3.919 19 N -0.806 5.806 20 Si 0.915 3.085 21 H -0.269 1.269 22 H -0.291 1.291 23 H -0.243 1.243 24 C -0.142 4.142 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.142 0.858 37 H 0.116 0.884 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.287 0.713 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.507 8.074 -12.156 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.049 3.951 3 C -0.208 4.208 4 C -0.019 4.019 5 O -0.300 6.300 6 C -0.032 4.032 7 C -0.084 4.084 8 N -0.341 5.341 9 C 0.360 3.640 10 O -0.415 6.415 11 C -0.104 4.104 12 C -0.257 4.257 13 C -0.099 4.099 14 C -0.243 4.243 15 C 0.082 3.918 16 C -0.468 4.468 17 H 0.112 0.888 18 C -0.138 4.138 19 N -0.430 5.430 20 Si 0.742 3.258 21 H -0.196 1.196 22 H -0.218 1.218 23 H -0.166 1.166 24 C -0.162 4.162 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.159 0.841 37 H 0.133 0.867 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.894 8.098 -12.133 16.134 hybrid contribution 0.652 -0.440 0.253 0.826 sum 7.545 7.658 -11.879 16.022 Atomic orbital electron populations 1.22158 0.91509 1.04169 1.01099 1.21211 0.96129 0.92373 0.85355 1.22065 1.01754 0.94830 1.02137 1.22963 0.81711 0.99988 0.97256 1.87904 1.21841 1.71825 1.48425 1.23067 1.00623 0.93833 0.85720 1.23500 0.81268 1.02397 1.01245 1.48095 1.08248 1.58465 1.19299 1.18840 0.84993 0.78351 0.81779 1.90734 1.17347 1.55380 1.77997 1.19444 0.95449 0.98870 0.96687 1.20788 0.95335 1.06724 1.02809 1.20549 0.98011 0.96094 0.95209 1.21177 0.96853 1.03113 1.03142 1.17697 0.91718 0.92381 0.89965 1.19553 0.96728 1.02459 1.28109 0.88836 1.26185 1.00448 0.95687 0.91492 1.69653 1.39146 1.13415 1.20785 0.86272 0.81442 0.76408 0.81721 1.19574 1.21830 1.16634 1.21164 0.99085 0.99161 0.96797 0.89720 0.93844 0.91586 0.91959 0.91717 0.92277 0.88078 0.92708 0.87875 0.92516 0.91072 0.84120 0.86665 0.88142 0.87883 0.90250 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 6.93 37.16 0.26 -1.62 16 2 C 0.13 1.80 1.03 -131.52 -0.14 1.67 16 3 C -0.15 -1.76 8.52 37.16 0.32 -1.44 16 4 C 0.06 0.70 5.62 37.09 0.21 0.91 16 5 O -0.38 -4.81 10.37 -35.23 -0.37 -5.18 16 6 C 0.04 0.53 6.98 37.31 0.26 0.79 16 7 C 0.04 0.50 4.71 -3.53 -0.02 0.48 16 8 N -0.61 -9.45 2.72 -158.83 -0.43 -9.88 16 9 C 0.57 10.99 7.24 -12.31 -0.09 10.90 16 10 O -0.54 -11.44 12.52 5.33 0.07 -11.37 16 11 C -0.10 -2.11 5.52 -105.04 -0.58 -2.69 16 12 C -0.24 -4.42 7.46 -38.92 -0.29 -4.71 16 13 C -0.08 -1.57 10.01 -39.73 -0.40 -1.97 16 14 C -0.22 -5.05 7.01 -38.81 -0.27 -5.32 16 15 C 0.09 2.10 5.13 -106.87 -0.55 1.55 16 16 C -0.44 -11.63 9.60 -37.73 -0.36 -11.99 16 17 H 0.09 2.62 8.06 -52.48 -0.42 2.19 16 18 C 0.08 2.06 5.46 -17.35 -0.09 1.96 16 19 N -0.81 -20.99 13.93 55.55 0.77 -20.21 16 20 Si 0.91 19.85 24.41 -169.99 -4.15 15.70 16 21 H -0.27 -5.63 6.68 56.52 0.38 -5.25 16 22 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.24 -5.31 6.70 56.52 0.38 -4.93 16 24 C -0.14 -3.31 9.35 -38.44 -0.36 -3.67 16 25 H 0.08 1.38 6.57 -51.92 -0.34 1.04 16 26 H 0.04 0.49 8.14 -51.94 -0.42 0.07 16 27 H 0.07 1.07 7.02 -51.93 -0.36 0.71 16 28 H 0.06 0.72 7.24 -51.93 -0.38 0.35 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.68 8.13 -51.93 -0.42 0.25 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.84 7.67 -51.93 -0.40 0.45 16 36 H 0.14 1.99 3.69 -52.02 -0.19 1.80 16 37 H 0.12 1.79 5.31 -52.49 -0.28 1.51 16 38 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16 39 H 0.10 2.31 4.46 -52.49 -0.23 2.08 16 40 H 0.29 6.74 8.30 -40.82 -0.34 6.40 16 41 H 0.11 2.63 7.98 -52.49 -0.42 2.21 16 LS Contribution 316.32 15.07 4.77 4.77 Total: -1.00 -28.03 316.32 -7.03 -35.07 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -5.59 Total: 6.27 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -2.10 Total: -15.15 kcal Atomic # 7 Polarization: -30.44 SS G_CDS: 0.34 Total: -30.10 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.30 Total: -16.56 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.15 Total: 15.70 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.03 -7.03 -35.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068379787.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.846 kcal (2) G-P(sol) polarization free energy of solvation -28.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds