Wall clock time and date at job start Tue Mar 31 2020 07:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47185 * 2 1 4 4 C 1.53004 * 109.47224 * 240.00247 * 2 1 3 5 5 N 1.46503 * 109.47455 * 120.00229 * 2 1 3 6 6 C 1.34769 * 120.00006 * 59.99547 * 5 2 1 7 7 O 1.21723 * 120.00307 * 0.02562 * 6 5 2 8 8 C 1.46261 * 120.00203 * 179.97438 * 6 5 2 9 9 C 1.35019 * 119.99951 * 179.97438 * 8 6 5 10 10 C 1.46960 * 119.99964 * 180.02562 * 9 8 6 11 11 C 1.40026 * 120.10278 * 180.02562 * 10 9 8 12 12 C 1.37594 * 119.89671 * 180.02562 * 11 10 9 13 13 C 1.39186 * 120.10270 * 0.25355 * 12 11 10 14 14 O 1.35570 * 119.89529 * 179.74677 * 13 12 11 15 15 C 1.34775 * 117.00328 * 354.43984 * 14 13 12 16 16 H 1.08009 * 120.00345 * 5.06215 * 15 14 13 17 17 C 1.38722 * 120.00120 * 185.06096 * 15 14 13 18 18 N 1.31502 * 119.99948 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99944 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47470 * 59.99803 * 19 17 15 21 21 H 1.48506 * 109.46794 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47053 * 299.99503 * 19 17 15 23 23 C 1.39173 * 120.19870 * 359.49053 * 13 12 11 24 24 C 1.37597 * 120.10370 * 0.50941 * 23 13 12 25 25 H 1.09000 * 109.47127 * 299.99842 * 1 2 3 26 26 H 1.08997 * 109.47496 * 59.99747 * 1 2 3 27 27 H 1.09004 * 109.46959 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47164 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47110 * 299.99931 * 3 2 1 30 30 H 1.09000 * 109.46959 * 60.00055 * 3 2 1 31 31 H 1.09004 * 109.46794 * 299.99662 * 4 2 1 32 32 H 1.08997 * 109.46879 * 59.99629 * 4 2 1 33 33 H 1.08999 * 109.47087 * 180.02562 * 4 2 1 34 34 H 0.97000 * 119.99556 * 240.00183 * 5 2 1 35 35 H 1.07994 * 119.99467 * 0.02562 * 8 6 5 36 36 H 1.08003 * 120.00324 * 0.02562 * 9 8 6 37 37 H 1.07997 * 120.04748 * 359.97438 * 11 10 9 38 38 H 1.08000 * 119.95146 * 179.97438 * 12 11 10 39 39 H 0.97001 * 119.99987 * 179.97438 * 18 17 15 40 40 H 1.08004 * 119.94780 * 180.26075 * 23 13 12 41 41 H 1.08000 * 120.05078 * 179.77148 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 6 1.6927 -1.9809 1.4094 7 8 0.9932 -2.5726 0.6080 8 6 2.1808 -2.6706 2.6033 9 6 1.8541 -3.9631 2.8172 10 6 2.3440 -4.6560 4.0170 11 6 2.0070 -5.9965 4.2407 12 6 2.4676 -6.6410 5.3658 13 6 3.2630 -5.9609 6.2835 14 8 3.7103 -6.5984 7.3932 15 6 3.2558 -7.8493 7.6052 16 1 2.6320 -8.3300 6.8659 17 6 3.5891 -8.5198 8.7731 18 7 4.3489 -7.9349 9.6730 19 14 2.9597 -10.2538 9.0667 20 1 3.4503 -11.1480 7.9872 21 1 3.4542 -10.7444 10.3782 22 1 1.4747 -10.2479 9.0678 23 6 3.6049 -4.6300 6.0626 24 6 3.1489 -3.9774 4.9403 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1392 33 1 3.1299 -0.7216 -1.2490 34 1 2.5760 -0.2192 1.8346 35 1 2.8017 -2.1458 3.3141 36 1 1.2328 -4.4879 2.1065 37 1 1.3859 -6.5235 3.5317 38 1 2.2079 -7.6748 5.5394 39 1 4.5816 -8.4035 10.4898 40 1 4.2258 -4.1074 6.7753 41 1 3.4117 -2.9435 4.7716 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069200394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:52 Heat of formation + Delta-G solvation = -34.895564 kcal Electronic energy + Delta-G solvation = -21508.720028 eV Core-core repulsion = 18161.362361 eV Total energy + Delta-G solvation = -3347.357667 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.01755 -39.16177 -37.06616 -36.40789 -33.22165 -32.39858 -31.80629 -30.42354 -28.13224 -27.59346 -27.38043 -25.68509 -23.61099 -22.19395 -21.14414 -19.64220 -19.30471 -18.16157 -17.09678 -17.04832 -15.96545 -15.00165 -14.87896 -14.80473 -14.44685 -14.13747 -14.10414 -13.81732 -13.70630 -13.43532 -13.02517 -12.66749 -12.53923 -12.30636 -12.25690 -11.92045 -11.84273 -11.71660 -11.70404 -11.31177 -11.21765 -11.09969 -11.03218 -10.69201 -10.54048 -9.57622 -9.50723 -9.48983 -9.08124 -8.84036 -8.37835 -7.10566 -6.64789 -4.19765 1.09599 2.13878 2.58068 3.04181 3.05934 3.08170 3.24288 3.61817 3.82562 4.51539 4.54994 4.73053 4.87130 4.92587 5.04818 5.07567 5.28440 5.28828 5.40810 5.52943 5.55989 5.57358 5.62189 5.67692 5.68845 5.80418 5.80535 6.01728 6.12142 6.17408 6.23468 6.46086 6.51090 6.57462 6.64079 6.79946 6.92290 7.13541 7.24320 7.28966 7.64236 7.64936 7.80426 8.42122 8.79880 9.46964 10.51798 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.048976 B = 0.002380 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.574198 B =11761.941213 C =12134.964594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 C -0.155 4.155 4 C -0.163 4.163 5 N -0.727 5.727 6 C 0.558 3.442 7 O -0.555 6.555 8 C -0.283 4.283 9 C 0.037 3.963 10 C -0.198 4.198 11 C -0.035 4.035 12 C -0.242 4.242 13 C 0.166 3.834 14 O -0.162 6.162 15 C -0.394 4.394 16 H 0.097 0.903 17 C 0.042 3.958 18 N -0.852 5.852 19 Si 0.945 3.055 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.267 1.267 23 C -0.200 4.200 24 C -0.043 4.043 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.398 0.602 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.275 0.725 40 H 0.120 0.880 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 13.347 -14.400 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.083 3.917 3 C -0.212 4.212 4 C -0.221 4.221 5 N -0.379 5.379 6 C 0.350 3.650 7 O -0.436 6.436 8 C -0.304 4.304 9 C 0.017 3.983 10 C -0.199 4.199 11 C -0.054 4.054 12 C -0.262 4.262 13 C 0.110 3.890 14 O -0.063 6.063 15 C -0.469 4.469 16 H 0.114 0.886 17 C -0.165 4.165 18 N -0.485 5.485 19 Si 0.769 3.231 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.192 1.192 23 C -0.219 4.219 24 C -0.062 4.062 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.232 0.768 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.132 0.868 38 H 0.149 0.851 39 H 0.085 0.915 40 H 0.138 0.862 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.003 12.941 -14.521 19.858 hybrid contribution 0.036 -0.552 0.531 0.766 sum -3.966 12.389 -13.990 19.103 Atomic orbital electron populations 1.22222 0.94439 1.04124 1.01345 1.20268 0.94351 0.91568 0.85539 1.22084 1.01543 0.94756 1.02839 1.22224 1.00814 1.02942 0.96146 1.46037 1.54443 1.12347 1.25091 1.18359 0.79412 0.81125 0.86102 1.90703 1.38970 1.66432 1.47461 1.22480 1.10746 0.97119 1.00060 1.22271 0.90240 0.93020 0.92781 1.18474 1.08518 0.95056 0.97900 1.20986 0.95793 0.93021 0.95567 1.21101 1.06316 1.01695 0.97043 1.19614 0.90665 0.91447 0.87263 1.83900 1.58479 1.28513 1.35441 1.21426 1.32305 0.88024 1.05155 0.88600 1.25392 0.96261 1.00418 0.94387 1.70001 1.32330 1.37888 1.08294 0.85717 0.79288 0.79785 0.78356 1.19253 1.20089 1.19243 1.20146 1.08171 0.92978 1.00597 1.20879 0.94643 0.98242 0.92389 0.92867 0.92246 0.90167 0.92007 0.91061 0.92009 0.90170 0.92248 0.92866 0.76789 0.86047 0.85959 0.86831 0.85137 0.91549 0.86154 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 8.40 37.15 0.31 -1.33 16 2 C 0.17 1.58 1.06 -131.82 -0.14 1.44 16 3 C -0.15 -1.01 8.59 37.16 0.32 -0.69 16 4 C -0.16 -1.64 8.40 37.16 0.31 -1.32 16 5 N -0.73 -7.53 5.10 -49.03 -0.25 -7.78 16 6 C 0.56 7.64 7.15 -13.04 -0.09 7.54 16 7 O -0.55 -9.14 12.43 5.17 0.06 -9.07 16 8 C -0.28 -3.85 9.41 -37.50 -0.35 -4.20 16 9 C 0.04 0.56 9.45 -37.19 -0.35 0.21 16 10 C -0.20 -3.39 5.87 -105.03 -0.62 -4.01 16 11 C -0.04 -0.63 9.78 -39.15 -0.38 -1.01 16 12 C -0.24 -5.03 9.14 -39.46 -0.36 -5.39 16 13 C 0.17 3.83 6.66 -38.88 -0.26 3.58 16 14 O -0.16 -4.41 9.74 0.76 0.01 -4.41 16 15 C -0.39 -10.47 9.48 30.91 0.29 -10.18 16 16 H 0.10 2.34 5.18 -52.48 -0.27 2.07 16 17 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 18 N -0.85 -23.87 13.67 55.48 0.76 -23.12 16 19 Si 0.94 19.53 29.55 -169.99 -5.02 14.51 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 C -0.20 -4.00 9.97 -39.47 -0.39 -4.39 16 24 C -0.04 -0.74 9.40 -39.15 -0.37 -1.11 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.03 6.16 -51.93 -0.32 0.71 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 1.03 6.16 -51.93 -0.32 0.71 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.40 3.17 8.45 -40.82 -0.34 2.82 16 35 H 0.12 1.43 6.06 -52.49 -0.32 1.11 16 36 H 0.12 1.84 7.52 -52.48 -0.39 1.45 16 37 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.13 2.67 5.62 -52.49 -0.29 2.38 16 39 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 41 H 0.12 1.64 6.16 -52.49 -0.32 1.31 16 LS Contribution 342.82 15.07 5.17 5.17 Total: -1.00 -30.08 342.82 -6.98 -37.06 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.53 Total: 7.51 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -2.18 Total: -19.87 kcal Atomic # 7 Polarization: -31.41 SS G_CDS: 0.51 Total: -30.90 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.07 Total: -13.48 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.08 -6.98 -37.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069200394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.163 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds