Wall clock time and date at job start Tue Mar 31 2020 07:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47288 * 2 1 4 4 C 1.53005 * 109.47306 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47430 * 173.66287 * 4 3 2 6 6 C 1.46900 * 111.00399 * 188.52247 * 5 4 3 7 7 C 1.52996 * 109.47268 * 163.62604 * 6 5 4 8 8 C 1.50700 * 109.47355 * 185.22884 * 7 6 5 9 9 H 1.08002 * 119.99420 * 0.02562 * 8 7 6 10 10 C 1.37869 * 120.00259 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00016 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99909 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47096 * 60.00203 * 12 10 8 14 14 H 1.48502 * 109.46831 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46935 * 300.00138 * 12 10 8 16 16 C 1.46900 * 110.99951 * 64.56596 * 5 4 3 17 17 H 1.09004 * 110.01665 * 152.76137 * 16 5 4 18 18 C 1.53875 * 110.02630 * 31.37872 * 16 5 4 19 19 C 1.54200 * 108.69064 * 193.57445 * 18 16 5 20 20 S 1.82912 * 105.10808 * 27.83752 * 19 18 16 21 21 O 1.42107 * 109.35282 * 244.51533 * 20 19 18 22 22 O 1.42095 * 109.35236 * 111.31728 * 20 19 18 23 23 C 1.55053 * 110.02792 * 274.14025 * 16 5 4 24 24 H 1.09007 * 109.46814 * 299.99988 * 1 2 3 25 25 H 1.08996 * 109.47270 * 59.99993 * 1 2 3 26 26 H 1.08997 * 109.47351 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47058 * 239.99523 * 2 1 3 28 28 H 1.09006 * 109.47312 * 120.00123 * 2 1 3 29 29 H 1.09008 * 109.46804 * 299.99806 * 3 2 1 30 30 H 1.08996 * 109.47445 * 59.99836 * 3 2 1 31 31 H 1.08999 * 109.46760 * 293.66527 * 4 3 2 32 32 H 1.09000 * 109.47149 * 53.66110 * 4 3 2 33 33 H 1.08999 * 109.46591 * 283.62819 * 6 5 4 34 34 H 1.09001 * 109.46906 * 43.62391 * 6 5 4 35 35 H 1.09001 * 109.47270 * 305.23327 * 7 6 5 36 36 H 1.09004 * 109.47119 * 65.23487 * 7 6 5 37 37 H 0.97003 * 119.99917 * 180.02562 * 11 10 8 38 38 H 1.08999 * 109.65281 * 313.38004 * 18 16 5 39 39 H 1.08998 * 109.64520 * 73.67953 * 18 16 5 40 40 H 1.09005 * 110.27251 * 268.94483 * 19 18 16 41 41 H 1.08992 * 110.42289 * 146.81126 * 19 18 16 42 42 H 1.08997 * 110.79274 * 279.99050 * 23 16 5 43 43 H 1.08999 * 110.79039 * 43.26328 * 23 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8189 -0.1535 6 6 5.5138 2.8405 -0.3610 7 6 5.9298 4.2050 -0.9141 8 6 7.3993 4.1851 -1.2476 9 1 7.9785 3.2886 -1.0819 10 6 8.0042 5.3107 -1.7650 11 7 7.2988 6.4022 -1.9672 12 14 9.8256 5.2857 -2.1790 13 1 10.0873 4.2375 -3.1977 14 1 10.2294 6.6101 -2.7158 15 1 10.6080 4.9899 -0.9520 16 6 3.6803 3.6439 1.0013 17 1 4.3986 4.4531 1.1338 18 6 3.6223 2.7774 2.2715 19 6 2.9023 3.5724 3.3794 20 16 1.7725 4.7067 2.4948 21 8 2.1700 6.0497 2.7356 22 8 0.4283 4.3111 2.7308 23 6 2.2579 4.2252 0.7943 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 3.9337 1.0298 0.9404 32 1 3.9330 0.8336 -0.8287 33 1 6.0188 2.6640 0.5886 34 1 5.7911 2.0609 -1.0705 35 1 5.3558 4.4223 -1.8149 36 1 5.7374 4.9743 -0.1662 37 1 7.7243 7.1941 -2.3317 38 1 3.0729 1.8592 2.0641 39 1 4.6341 2.5319 2.5942 40 1 3.6241 4.1394 3.9674 41 1 2.3357 2.8997 4.0232 42 1 2.2873 5.0959 0.1392 43 1 1.5839 3.4664 0.3966 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071014522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:50 Heat of formation + Delta-G solvation = -69.623288 kcal Electronic energy + Delta-G solvation = -22316.246681 eV Core-core repulsion = 19102.827058 eV Total energy + Delta-G solvation = -3213.419623 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.40204 -36.99872 -35.97924 -34.96980 -34.17817 -32.70836 -30.29199 -29.76598 -27.90376 -24.96652 -24.15196 -22.99566 -21.53723 -20.76588 -19.46132 -18.76503 -17.09305 -16.68123 -16.36978 -15.68658 -15.65374 -14.81301 -14.69498 -14.61963 -14.43796 -13.94040 -13.41006 -13.26441 -13.00232 -12.78317 -12.41096 -12.20704 -12.10205 -12.02726 -11.98684 -11.87451 -11.38501 -11.30107 -11.18687 -11.12995 -10.94579 -10.75896 -10.60625 -10.56196 -10.37355 -10.20932 -9.87954 -9.47031 -9.19057 -8.37639 -7.92739 -6.03179 -4.06562 0.07749 2.52867 3.30633 3.35971 3.37284 3.60350 3.94325 4.14019 4.40980 4.47396 4.57468 4.71609 4.75752 4.82945 4.94456 5.01716 5.10079 5.30163 5.32900 5.44444 5.48950 5.52726 5.58958 5.64067 5.71952 5.77346 5.87922 5.93317 5.95798 6.06756 6.16173 6.18020 6.30643 6.36804 6.84915 7.28690 7.36848 7.69246 7.81521 8.01916 8.36539 9.00249 9.57651 11.07934 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.004769 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.703059 B = 5870.111558 C = 7104.536791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.131 4.131 4 C 0.042 3.958 5 N -0.516 5.516 6 C 0.059 3.941 7 C 0.027 3.973 8 C -0.526 4.526 9 H 0.053 0.947 10 C 0.060 3.940 11 N -0.891 5.891 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.086 3.914 17 H 0.112 0.888 18 C -0.155 4.155 19 C -0.589 4.589 20 S 2.377 3.623 21 O -0.937 6.937 22 O -0.947 6.947 23 C -0.585 4.585 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.024 0.976 34 H 0.066 0.934 35 H 0.027 0.973 36 H 0.016 0.984 37 H 0.262 0.738 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.136 0.864 41 H 0.133 0.867 42 H 0.145 0.855 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.710 -10.994 8.082 17.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.169 4.169 4 C -0.086 4.086 5 N -0.239 5.239 6 C -0.068 4.068 7 C -0.010 4.010 8 C -0.565 4.565 9 H 0.071 0.929 10 C -0.142 4.142 11 N -0.530 5.530 12 Si 0.720 3.280 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.203 1.203 16 C -0.025 4.025 17 H 0.129 0.871 18 C -0.195 4.195 19 C -0.719 4.719 20 S 2.561 3.439 21 O -0.934 6.934 22 O -0.944 6.944 23 C -0.716 4.716 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.034 0.966 37 H 0.072 0.928 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.163 0.837 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.571 -9.938 7.933 17.881 hybrid contribution 2.053 -0.830 0.196 2.223 sum -10.518 -10.768 8.129 17.107 Atomic orbital electron populations 1.21793 0.95841 1.01454 1.02132 1.21524 0.95892 0.96882 1.01992 1.22054 0.95463 0.96632 1.02741 1.22344 0.94901 0.90615 1.00757 1.62270 1.16082 1.09365 1.36140 1.22464 0.82819 1.02599 0.98870 1.19110 0.95632 0.89528 0.96734 1.21109 0.94438 0.97985 1.42925 0.92864 1.24979 0.98006 0.95553 0.95615 1.69953 1.35976 1.02378 1.44649 0.86667 0.85475 0.77176 0.78714 1.20255 1.21243 1.20307 1.22349 0.94314 0.97339 0.88510 0.87054 1.22854 1.03265 1.00499 0.92873 1.30421 1.15819 1.15552 1.10134 1.09287 0.76723 0.77085 0.80767 1.93636 1.83902 1.31909 1.83918 1.93587 1.32266 1.84231 1.84303 1.31082 1.06933 1.12827 1.20722 0.92572 0.92568 0.92945 0.91825 0.92253 0.90333 0.91735 0.94185 0.90526 0.95720 0.91580 0.95432 0.96588 0.92839 0.88448 0.89031 0.84599 0.84835 0.83705 0.83224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.15 0.37 -0.92 16 2 C -0.12 -1.10 5.93 -26.74 -0.16 -1.26 16 3 C -0.13 -1.36 3.32 -26.73 -0.09 -1.45 16 4 C 0.04 0.51 4.42 -3.82 -0.02 0.49 16 5 N -0.52 -7.97 4.42 -224.81 -0.99 -8.96 16 6 C 0.06 1.11 4.85 -3.83 -0.02 1.09 16 7 C 0.03 0.67 4.97 -27.89 -0.14 0.53 16 8 C -0.53 -14.31 9.11 -34.44 -0.31 -14.63 16 9 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 12 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 C 0.09 1.19 2.36 -66.17 -0.16 1.03 16 17 H 0.11 1.77 6.34 -51.93 -0.33 1.44 16 18 C -0.16 -1.65 4.60 -25.65 -0.12 -1.77 16 19 C -0.59 -5.50 7.26 37.78 0.27 -5.23 16 20 S 2.38 28.73 6.11 -107.50 -0.66 28.07 16 21 O -0.94 -15.11 18.15 -57.71 -1.05 -16.16 16 22 O -0.95 -13.54 18.14 -57.71 -1.05 -14.59 16 23 C -0.58 -7.12 6.37 38.24 0.24 -6.88 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.88 7.77 -51.92 -0.40 0.47 16 30 H 0.06 0.62 4.50 -51.93 -0.23 0.39 16 31 H 0.04 0.44 5.91 -51.93 -0.31 0.13 16 32 H 0.08 0.95 7.89 -51.93 -0.41 0.54 16 33 H 0.02 0.45 8.05 -51.93 -0.42 0.03 16 34 H 0.07 1.24 7.82 -51.93 -0.41 0.84 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.02 0.41 6.78 -51.93 -0.35 0.06 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.10 0.90 4.25 -51.93 -0.22 0.68 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.14 1.81 8.14 -51.93 -0.42 1.39 16 43 H 0.15 1.61 4.35 -51.93 -0.23 1.39 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -33.89 340.66 -10.19 -44.08 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.07 Total: -0.78 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: -0.22 Total: -27.41 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: -0.26 Total: -34.54 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -2.09 Total: -30.75 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 28.73 SS G_CDS: -0.66 Total: 28.07 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.89 -10.19 -44.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071014522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.543 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds