Wall clock time and date at job start Tue Mar 31 2020 07:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47288 * 2 1 4 4 C 1.53005 * 109.47306 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47430 * 173.66287 * 4 3 2 6 6 C 1.46900 * 111.00399 * 188.52247 * 5 4 3 7 7 C 1.52996 * 109.47268 * 163.62604 * 6 5 4 8 8 C 1.50700 * 109.47355 * 185.22884 * 7 6 5 9 9 H 1.08002 * 119.99420 * 0.02562 * 8 7 6 10 10 C 1.37869 * 120.00259 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00016 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99909 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47096 * 60.00203 * 12 10 8 14 14 H 1.48502 * 109.46831 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46935 * 300.00138 * 12 10 8 16 16 C 1.46900 * 110.99951 * 64.56596 * 5 4 3 17 17 H 1.09004 * 110.01665 * 152.76137 * 16 5 4 18 18 C 1.53875 * 110.02630 * 31.37872 * 16 5 4 19 19 C 1.54200 * 108.69064 * 193.57445 * 18 16 5 20 20 S 1.82912 * 105.10808 * 27.83752 * 19 18 16 21 21 O 1.42107 * 109.35282 * 244.51533 * 20 19 18 22 22 O 1.42095 * 109.35236 * 111.31728 * 20 19 18 23 23 C 1.55053 * 110.02792 * 274.14025 * 16 5 4 24 24 H 1.09007 * 109.46814 * 299.99988 * 1 2 3 25 25 H 1.08996 * 109.47270 * 59.99993 * 1 2 3 26 26 H 1.08997 * 109.47351 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47058 * 239.99523 * 2 1 3 28 28 H 1.09006 * 109.47312 * 120.00123 * 2 1 3 29 29 H 1.09008 * 109.46804 * 299.99806 * 3 2 1 30 30 H 1.08996 * 109.47445 * 59.99836 * 3 2 1 31 31 H 1.08999 * 109.46760 * 293.66527 * 4 3 2 32 32 H 1.09000 * 109.47149 * 53.66110 * 4 3 2 33 33 H 1.08999 * 109.46591 * 283.62819 * 6 5 4 34 34 H 1.09001 * 109.46906 * 43.62391 * 6 5 4 35 35 H 1.09001 * 109.47270 * 305.23327 * 7 6 5 36 36 H 1.09004 * 109.47119 * 65.23487 * 7 6 5 37 37 H 0.97003 * 119.99917 * 180.02562 * 11 10 8 38 38 H 1.08999 * 109.65281 * 313.38004 * 18 16 5 39 39 H 1.08998 * 109.64520 * 73.67953 * 18 16 5 40 40 H 1.09005 * 110.27251 * 268.94483 * 19 18 16 41 41 H 1.08992 * 110.42289 * 146.81126 * 19 18 16 42 42 H 1.08997 * 110.79274 * 279.99050 * 23 16 5 43 43 H 1.08999 * 110.79039 * 43.26328 * 23 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8189 -0.1535 6 6 5.5138 2.8405 -0.3610 7 6 5.9298 4.2050 -0.9141 8 6 7.3993 4.1851 -1.2476 9 1 7.9785 3.2886 -1.0819 10 6 8.0042 5.3107 -1.7650 11 7 7.2988 6.4022 -1.9672 12 14 9.8256 5.2857 -2.1790 13 1 10.0873 4.2375 -3.1977 14 1 10.2294 6.6101 -2.7158 15 1 10.6080 4.9899 -0.9520 16 6 3.6803 3.6439 1.0013 17 1 4.3986 4.4531 1.1338 18 6 3.6223 2.7774 2.2715 19 6 2.9023 3.5724 3.3794 20 16 1.7725 4.7067 2.4948 21 8 2.1700 6.0497 2.7356 22 8 0.4283 4.3111 2.7308 23 6 2.2579 4.2252 0.7943 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 3.9337 1.0298 0.9404 32 1 3.9330 0.8336 -0.8287 33 1 6.0188 2.6640 0.5886 34 1 5.7911 2.0609 -1.0705 35 1 5.3558 4.4223 -1.8149 36 1 5.7374 4.9743 -0.1662 37 1 7.7243 7.1941 -2.3317 38 1 3.0729 1.8592 2.0641 39 1 4.6341 2.5319 2.5942 40 1 3.6241 4.1394 3.9674 41 1 2.3357 2.8997 4.0232 42 1 2.2873 5.0959 0.1392 43 1 1.5839 3.4664 0.3966 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071014522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:50 Heat of formation + Delta-G solvation = -94.260649 kcal Electronic energy + Delta-G solvation = -22317.315037 eV Core-core repulsion = 19102.827058 eV Total energy + Delta-G solvation = -3214.487979 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.49205 -38.10373 -37.08868 -35.97714 -35.55753 -34.35781 -31.74766 -30.72344 -29.18757 -26.38421 -25.43249 -23.96602 -22.85538 -21.82844 -20.65827 -19.78384 -18.61445 -17.89195 -17.69418 -16.77630 -16.65061 -16.51572 -15.99606 -15.70151 -15.46487 -14.83531 -14.58311 -14.51520 -14.08178 -14.04436 -13.66857 -13.35149 -13.26328 -13.17339 -13.12377 -13.00915 -12.76937 -12.73463 -12.54956 -12.22294 -12.10571 -12.01631 -11.76601 -11.65457 -11.48774 -11.33761 -11.29007 -11.08530 -11.05749 -10.50931 -9.12556 -8.17742 -6.28832 -0.90593 1.41485 1.43913 1.51797 1.56782 2.41381 2.62862 2.91498 3.12561 3.16304 3.47931 3.58717 3.80213 3.95781 3.99575 4.00321 4.15575 4.33458 4.46651 4.50980 4.55027 4.60885 4.70261 4.74132 4.78429 4.83209 4.93005 4.97535 5.09280 5.10541 5.12834 5.19252 5.35237 5.46296 5.49789 5.56183 5.68683 5.82066 6.13092 6.30575 6.34095 6.89596 7.40660 8.93921 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.004769 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.703059 B = 5870.111558 C = 7104.536791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.121 4.121 3 C -0.130 4.130 4 C 0.040 3.960 5 N -0.531 5.531 6 C 0.076 3.924 7 C 0.033 3.967 8 C -0.542 4.542 9 H 0.063 0.937 10 C 0.002 3.998 11 N -0.932 5.932 12 Si 0.962 3.038 13 H -0.267 1.267 14 H -0.287 1.287 15 H -0.266 1.266 16 C 0.077 3.923 17 H 0.081 0.919 18 C -0.152 4.152 19 C -0.562 4.562 20 S 2.388 3.612 21 O -0.984 6.984 22 O -0.968 6.968 23 C -0.585 4.585 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.067 0.933 35 H -0.009 1.009 36 H -0.008 1.008 37 H 0.262 0.738 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.150 0.850 41 H 0.170 0.830 42 H 0.131 0.869 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.335 -13.596 9.489 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C -0.168 4.168 4 C -0.087 4.087 5 N -0.254 5.254 6 C -0.051 4.051 7 C -0.005 4.005 8 C -0.581 4.581 9 H 0.081 0.919 10 C -0.196 4.196 11 N -0.573 5.573 12 Si 0.787 3.213 13 H -0.192 1.192 14 H -0.212 1.212 15 H -0.191 1.191 16 C -0.034 4.034 17 H 0.099 0.901 18 C -0.191 4.191 19 C -0.695 4.695 20 S 2.575 3.425 21 O -0.981 6.981 22 O -0.965 6.965 23 C -0.715 4.715 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.010 0.990 36 H 0.011 0.989 37 H 0.071 0.929 38 H 0.137 0.863 39 H 0.118 0.882 40 H 0.168 0.832 41 H 0.188 0.812 42 H 0.149 0.851 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.230 -12.539 9.331 19.846 hybrid contribution 1.905 -0.044 -0.253 1.922 sum -10.325 -12.583 9.078 18.638 Atomic orbital electron populations 1.21808 0.95523 1.02118 1.01941 1.21499 0.96114 0.95562 1.02730 1.22042 0.94087 0.97997 1.02650 1.22454 0.95993 0.88421 1.01796 1.62108 1.13717 1.11814 1.37798 1.22038 0.85396 0.98741 0.98906 1.18957 0.94345 0.92435 0.94715 1.21613 0.95851 0.98260 1.42348 0.91922 1.25931 1.02988 0.95166 0.95537 1.70108 1.38113 1.03156 1.45876 0.85545 0.79551 0.77270 0.78934 1.19156 1.21235 1.19080 1.22355 0.94159 0.97037 0.89859 0.90055 1.22845 1.04383 1.00586 0.91316 1.30271 1.14890 1.14683 1.09697 1.08821 0.76627 0.76587 0.80432 1.93574 1.84548 1.35514 1.84513 1.93552 1.34101 1.84353 1.84454 1.31058 1.06514 1.12741 1.21217 0.92495 0.93095 0.91889 0.91840 0.90805 0.91601 0.90796 0.92007 0.90762 0.94743 0.91466 0.99009 0.98921 0.92909 0.86251 0.88182 0.83209 0.81185 0.85086 0.81665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.91 71.98 0.71 -1.52 16 2 C -0.12 -1.79 5.93 30.59 0.18 -1.61 16 3 C -0.13 -2.42 3.32 30.59 0.10 -2.32 16 4 C 0.04 0.89 4.42 86.31 0.38 1.28 16 5 N -0.53 -16.21 4.42 -865.16 -3.83 -20.04 16 6 C 0.08 2.89 4.85 86.30 0.42 3.31 16 7 C 0.03 1.68 4.97 29.85 0.15 1.83 16 8 C -0.54 -29.95 9.11 25.60 0.23 -29.72 16 9 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 10 C 0.00 0.10 5.46 84.65 0.46 0.56 16 11 N -0.93 -56.80 13.29 21.44 0.28 -56.52 16 12 Si 0.96 43.64 29.54 68.60 2.03 45.66 16 13 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 16 C 0.08 2.10 2.36 45.91 0.11 2.21 16 17 H 0.08 2.70 6.34 -2.38 -0.02 2.69 16 18 C -0.15 -2.78 4.60 31.30 0.14 -2.63 16 19 C -0.56 -8.66 7.26 72.39 0.53 -8.13 16 20 S 2.39 56.26 6.11 -56.49 -0.34 55.91 16 21 O -0.98 -32.60 18.15 -127.49 -2.31 -34.92 16 22 O -0.97 -26.57 18.14 -127.49 -2.31 -28.88 16 23 C -0.58 -14.37 6.37 72.68 0.46 -13.91 16 24 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.07 0.90 8.14 -2.38 -0.02 0.89 16 29 H 0.07 1.40 7.77 -2.38 -0.02 1.38 16 30 H 0.07 1.22 4.50 -2.39 -0.01 1.21 16 31 H 0.06 1.12 5.91 -2.39 -0.01 1.11 16 32 H 0.07 1.69 7.89 -2.39 -0.02 1.67 16 33 H 0.03 1.22 8.05 -2.39 -0.02 1.20 16 34 H 0.07 2.50 7.82 -2.39 -0.02 2.48 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H -0.01 -0.41 6.78 -2.39 -0.02 -0.43 16 37 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.12 1.69 4.25 -2.39 -0.01 1.68 16 39 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.15 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.17 1.54 8.14 -2.39 -0.02 1.53 16 42 H 0.13 3.56 8.14 -2.39 -0.02 3.54 16 43 H 0.17 3.46 4.35 -2.39 -0.01 3.45 16 Total: -1.00 -75.18 340.66 -1.62 -76.80 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.98 Total: 12.64 kcal Atomic # 6 Polarization: -54.54 SS G_CDS: 3.88 Total: -50.66 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -3.54 Total: -76.56 kcal Atomic # 8 Polarization: -59.17 SS G_CDS: -4.63 Total: -63.80 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 56.26 SS G_CDS: -0.34 Total: 55.91 kcal Total: -75.18 -1.62 -76.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071014522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.457 kcal (2) G-P(sol) polarization free energy of solvation -75.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds