Wall clock time and date at job start Tue Mar 31 2020 07:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47114 * 2 1 4 4 C 1.53003 * 109.47114 * 180.02562 * 3 2 1 5 5 N 1.46893 * 109.46879 * 185.92726 * 4 3 2 6 6 C 1.46904 * 110.99890 * 172.52099 * 5 4 3 7 7 C 1.52997 * 109.47074 * 199.74173 * 6 5 4 8 8 C 1.50702 * 109.46963 * 175.05739 * 7 6 5 9 9 H 1.07999 * 119.99934 * 0.02562 * 8 7 6 10 10 C 1.37881 * 119.99734 * 179.72419 * 8 7 6 11 11 N 1.31507 * 120.00131 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99612 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47159 * 90.00403 * 12 10 8 14 14 H 1.48507 * 109.46902 * 209.99969 * 12 10 8 15 15 H 1.48501 * 109.47214 * 329.99956 * 12 10 8 16 16 C 1.46900 * 111.00118 * 296.47440 * 5 4 3 17 17 H 1.09004 * 109.64335 * 202.82208 * 16 5 4 18 18 C 1.53881 * 109.64687 * 323.24226 * 16 5 4 19 19 C 1.54969 * 106.65955 * 167.15062 * 18 16 5 20 20 S 1.83281 * 102.48232 * 317.38636 * 19 18 16 21 21 O 1.42102 * 109.35522 * 269.90402 * 20 19 18 22 22 O 1.42100 * 109.47845 * 136.73347 * 20 19 18 23 23 C 1.54160 * 109.64659 * 82.38399 * 16 5 4 24 24 H 1.08991 * 109.47010 * 300.00190 * 1 2 3 25 25 H 1.08998 * 109.46781 * 60.00537 * 1 2 3 26 26 H 1.09005 * 109.46802 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47545 * 239.99393 * 2 1 3 28 28 H 1.09007 * 109.47271 * 119.99796 * 2 1 3 29 29 H 1.08991 * 109.47074 * 59.99528 * 3 2 1 30 30 H 1.08998 * 109.46858 * 299.99416 * 3 2 1 31 31 H 1.09001 * 109.47100 * 65.92398 * 4 3 2 32 32 H 1.08999 * 109.46905 * 305.92590 * 4 3 2 33 33 H 1.09003 * 109.47262 * 79.74372 * 6 5 4 34 34 H 1.09000 * 109.47344 * 319.74412 * 6 5 4 35 35 H 1.09000 * 109.47403 * 55.06324 * 7 6 5 36 36 H 1.09003 * 109.47693 * 295.05746 * 7 6 5 37 37 H 0.97002 * 119.99911 * 179.97438 * 11 10 8 38 38 H 1.08996 * 110.02872 * 286.32619 * 18 16 5 39 39 H 1.09006 * 110.02399 * 47.73981 * 18 16 5 40 40 H 1.09009 * 110.75605 * 199.17893 * 19 18 16 41 41 H 1.08999 * 110.90480 * 75.66500 * 19 18 16 42 42 H 1.08998 * 110.32224 * 331.14349 * 23 16 5 43 43 H 1.09008 * 110.31556 * 93.33823 * 23 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0597 2.8200 0.1424 6 6 5.5173 2.8445 0.3238 7 6 5.9314 4.1791 0.9467 8 6 7.4085 4.1576 1.2447 9 1 7.9934 3.2799 1.0125 10 6 8.0143 5.2607 1.8079 11 7 7.3030 6.3314 2.0856 12 14 9.8454 5.2342 2.1766 13 1 10.5952 5.7345 0.9964 14 1 10.1273 6.1037 3.3470 15 1 10.2693 3.8436 2.4794 16 6 3.6583 3.6434 -1.0061 17 1 4.3312 4.4958 -1.0989 18 6 3.7123 2.7995 -2.2917 19 6 2.9753 3.6110 -3.3871 20 16 1.5077 4.2448 -2.4906 21 8 0.4425 3.3121 -2.6120 22 8 1.2968 5.6082 -2.8310 23 6 2.2135 4.1427 -0.8061 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 1.0234 -0.9391 32 1 3.9337 0.8394 0.8313 33 1 6.0059 2.7279 -0.6436 34 1 5.8153 2.0283 0.9819 35 1 5.3765 4.3361 1.8717 36 1 5.7130 4.9886 0.2501 37 1 7.7292 7.1073 2.4822 38 1 4.7485 2.6340 -2.5864 39 1 3.2119 1.8442 -2.1325 40 1 2.6754 2.9638 -4.2114 41 1 3.5949 4.4332 -3.7451 42 1 1.6483 3.4337 -0.2012 43 1 2.2147 5.1261 -0.3359 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071014523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:54 Heat of formation + Delta-G solvation = -69.123550 kcal Electronic energy + Delta-G solvation = -22393.783603 eV Core-core repulsion = 19180.385650 eV Total energy + Delta-G solvation = -3213.397953 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.43726 -37.03122 -36.03458 -34.93001 -34.15203 -32.70034 -30.34100 -29.72342 -27.93306 -24.93671 -24.14993 -22.97960 -21.50097 -20.77186 -19.43885 -18.83840 -17.08927 -16.64690 -16.38750 -15.84021 -15.63655 -14.92548 -14.71348 -14.58107 -14.27932 -13.90216 -13.38871 -13.12847 -12.94440 -12.89342 -12.39619 -12.23915 -12.14601 -12.09450 -11.96659 -11.90722 -11.40312 -11.34474 -11.12705 -11.09576 -10.97370 -10.70185 -10.61566 -10.53614 -10.35939 -10.19067 -9.89507 -9.49129 -9.18909 -8.39345 -7.91915 -6.05114 -4.08172 0.03964 2.48661 3.27936 3.34966 3.37330 3.56295 3.92363 4.14107 4.36960 4.45323 4.53605 4.71443 4.77549 4.89069 4.97616 5.04043 5.13090 5.31208 5.35927 5.39149 5.51193 5.57228 5.62692 5.65380 5.74780 5.83635 5.92238 5.95858 6.01051 6.08971 6.18689 6.23213 6.32926 6.38067 6.85480 7.29259 7.36324 7.68721 7.80977 8.01057 8.35438 8.99061 9.56127 11.06055 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017717 B = 0.004552 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.002735 B = 6149.352122 C = 7172.092069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.133 4.133 4 C 0.040 3.960 5 N -0.520 5.520 6 C 0.059 3.941 7 C 0.029 3.971 8 C -0.525 4.525 9 H 0.054 0.946 10 C 0.060 3.940 11 N -0.891 5.891 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.093 3.907 17 H 0.110 0.890 18 C -0.162 4.162 19 C -0.584 4.584 20 S 2.375 3.625 21 O -0.941 6.941 22 O -0.943 6.943 23 C -0.593 4.593 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.026 0.974 34 H 0.065 0.935 35 H 0.027 0.973 36 H 0.015 0.985 37 H 0.261 0.739 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.157 0.843 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.107 -9.947 -8.424 17.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C -0.170 4.170 4 C -0.088 4.088 5 N -0.243 5.243 6 C -0.067 4.067 7 C -0.009 4.009 8 C -0.564 4.564 9 H 0.072 0.928 10 C -0.142 4.142 11 N -0.530 5.530 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.018 4.018 17 H 0.128 0.872 18 C -0.201 4.201 19 C -0.714 4.714 20 S 2.559 3.441 21 O -0.938 6.938 22 O -0.940 6.940 23 C -0.724 4.724 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.045 0.955 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.174 0.826 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.198 -9.260 -8.236 17.389 hybrid contribution 2.244 -0.464 -0.209 2.302 sum -9.953 -9.725 -8.445 16.278 Atomic orbital electron populations 1.21800 0.95782 1.01381 1.02355 1.21503 0.96023 0.96715 1.01876 1.22089 0.95384 0.96938 1.02619 1.22374 0.94928 0.90633 1.00837 1.62323 1.15403 1.09392 1.37143 1.22454 0.82806 1.02533 0.98936 1.19089 0.95519 0.89848 0.96419 1.21163 0.93841 1.00129 1.41222 0.92821 1.24981 0.98033 0.95539 0.95631 1.69960 1.35701 1.04227 1.43140 0.86612 0.85589 0.77964 0.77915 1.20708 1.21177 1.19907 1.22055 0.93662 0.97841 0.88265 0.87219 1.23114 1.03922 1.00182 0.92927 1.30517 1.19628 1.11532 1.09727 1.09388 0.78337 0.75678 0.80714 1.93597 1.50664 1.64049 1.85538 1.93606 1.85219 1.32971 1.82227 1.31023 1.07881 1.12507 1.20992 0.92724 0.92094 0.93043 0.92230 0.91931 0.90381 0.91781 0.94188 0.90418 0.95613 0.91686 0.95488 0.96674 0.92921 0.88377 0.88461 0.84858 0.84378 0.82571 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.12 -1.20 5.93 -26.73 -0.16 -1.36 16 3 C -0.13 -1.49 3.31 -26.73 -0.09 -1.57 16 4 C 0.04 0.50 4.39 -3.83 -0.02 0.49 16 5 N -0.52 -8.05 4.40 -225.37 -0.99 -9.04 16 6 C 0.06 1.11 4.84 -3.82 -0.02 1.09 16 7 C 0.03 0.70 5.03 -27.88 -0.14 0.56 16 8 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 9 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 12 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 16 C 0.09 1.26 2.35 -66.65 -0.16 1.10 16 17 H 0.11 1.66 6.53 -51.93 -0.34 1.33 16 18 C -0.16 -1.74 4.65 -25.23 -0.12 -1.86 16 19 C -0.58 -5.46 7.31 38.20 0.28 -5.18 16 20 S 2.37 27.88 5.87 -107.50 -0.63 27.25 16 21 O -0.94 -13.00 17.44 -57.73 -1.01 -14.01 16 22 O -0.94 -14.44 18.15 -57.73 -1.05 -15.49 16 23 C -0.59 -7.16 5.98 37.76 0.23 -6.94 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.91 7.46 -51.93 -0.39 0.52 16 30 H 0.06 0.70 3.84 -51.93 -0.20 0.50 16 31 H 0.04 0.45 5.84 -51.93 -0.30 0.15 16 32 H 0.08 0.98 7.89 -51.93 -0.41 0.57 16 33 H 0.03 0.46 7.60 -51.93 -0.39 0.07 16 34 H 0.06 1.22 7.77 -51.93 -0.40 0.82 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.01 0.38 6.92 -51.93 -0.36 0.02 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.10 1.05 7.85 -51.93 -0.41 0.64 16 39 H 0.10 0.95 4.60 -51.93 -0.24 0.72 16 40 H 0.13 0.98 8.14 -51.92 -0.42 0.55 16 41 H 0.14 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.16 1.79 4.24 -51.93 -0.22 1.57 16 43 H 0.14 1.70 8.14 -51.92 -0.42 1.28 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -33.30 338.16 -10.11 -43.41 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.01 Total: -0.19 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: -0.23 Total: -27.72 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: -0.25 Total: -34.42 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -2.05 Total: -29.49 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 27.88 SS G_CDS: -0.63 Total: 27.25 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.30 -10.11 -43.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071014523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.712 kcal (2) G-P(sol) polarization free energy of solvation -33.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds