Wall clock time and date at job start Tue Mar 31 2020 06:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47165 * 2 1 4 4 C 1.53002 * 109.47433 * 239.99875 * 2 1 3 5 5 C 1.50700 * 109.46963 * 119.99910 * 2 1 3 6 6 C 1.33015 * 120.00123 * 0.02562 * 5 2 1 7 7 C 1.47066 * 119.99920 * 180.02562 * 6 5 2 8 8 O 1.21622 * 120.00079 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99695 * 179.97438 * 7 6 5 10 10 C 1.39833 * 119.99756 * 175.49970 * 9 7 6 11 11 C 1.38982 * 120.03938 * 215.15737 * 10 9 7 12 12 C 1.38154 * 120.06691 * 179.97438 * 11 10 9 13 13 C 1.38171 * 120.13891 * 359.78874 * 12 11 10 14 14 C 1.38919 * 120.07396 * 0.46258 * 13 12 11 15 15 O 1.35752 * 120.02671 * 179.79095 * 14 13 12 16 16 C 1.34828 * 117.00319 * 354.34698 * 15 14 13 17 17 H 1.07996 * 120.00048 * 5.02937 * 16 15 14 18 18 C 1.38653 * 120.00014 * 185.02229 * 16 15 14 19 19 N 1.31560 * 120.00042 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00079 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46783 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46973 * 120.00325 * 20 18 16 23 23 H 1.48505 * 109.46776 * 240.00001 * 20 18 16 24 24 C 1.38737 * 120.03795 * 35.13515 * 10 9 7 25 25 H 1.08994 * 109.47431 * 299.99979 * 1 2 3 26 26 H 1.09001 * 109.47296 * 60.00312 * 1 2 3 27 27 H 1.09004 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47161 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46988 * 299.99592 * 3 2 1 30 30 H 1.08989 * 109.47354 * 59.99778 * 3 2 1 31 31 H 1.09010 * 109.46914 * 300.00240 * 4 2 1 32 32 H 1.09001 * 109.47032 * 59.99652 * 4 2 1 33 33 H 1.08992 * 109.47363 * 180.02562 * 4 2 1 34 34 H 1.08006 * 119.99938 * 179.97438 * 5 2 1 35 35 H 1.07997 * 120.00216 * 359.97438 * 6 5 2 36 36 H 0.96993 * 120.00243 * 355.50425 * 9 7 6 37 37 H 1.08006 * 119.96770 * 359.97438 * 11 10 9 38 38 H 1.08003 * 119.93166 * 180.02562 * 12 11 10 39 39 H 1.08000 * 119.96408 * 180.23246 * 13 12 11 40 40 H 0.97005 * 120.00321 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.06919 * 0.03941 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1679 -1.2163 2.1058 7 6 1.6581 -1.9091 3.3069 8 8 2.8538 -2.0198 3.4996 9 7 0.7822 -2.4213 4.1940 10 6 1.2455 -3.1610 5.2864 11 6 0.5087 -4.2409 5.7582 12 6 0.9662 -4.9725 6.8371 13 6 2.1591 -4.6362 7.4478 14 6 2.8977 -3.5547 6.9843 15 8 4.0675 -3.2225 7.5876 16 6 4.3979 -3.9068 8.7013 17 1 3.7848 -4.7333 9.0290 18 6 5.5248 -3.5496 9.4258 19 7 6.2715 -2.5426 9.0268 20 14 5.9830 -4.4983 10.9685 21 1 4.9890 -5.5770 11.1996 22 1 7.3316 -5.0964 10.7995 23 1 5.9929 -3.5758 12.1322 24 6 2.4415 -2.8182 5.9003 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 3.0941 -0.8094 1.4012 35 1 0.1061 -1.1177 1.9349 36 1 -0.1694 -2.2768 4.0747 37 1 -0.4225 -4.5084 5.2809 38 1 0.3920 -5.8115 7.2017 39 1 2.5160 -5.2123 8.2886 40 1 7.0597 -2.2924 9.5339 41 1 3.0159 -1.9793 5.5359 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074482921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:19 Heat of formation + Delta-G solvation = -28.650899 kcal Electronic energy + Delta-G solvation = -21888.455033 eV Core-core repulsion = 18541.368155 eV Total energy + Delta-G solvation = -3347.086878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13217 -38.70787 -37.91343 -36.41868 -34.00264 -32.20912 -31.75301 -29.41641 -28.39510 -27.66721 -27.53074 -25.31273 -24.12048 -22.00866 -21.22171 -20.05204 -18.56836 -17.98443 -17.52473 -16.87809 -15.66929 -15.11946 -15.02738 -14.91113 -14.68999 -14.44596 -14.16915 -13.99343 -13.58455 -13.48069 -12.80466 -12.64280 -12.48783 -12.42770 -12.28303 -11.98658 -11.70535 -11.49197 -11.34294 -11.24463 -11.16993 -10.99192 -10.97960 -10.73815 -10.41574 -9.73417 -9.66994 -9.52469 -9.11693 -8.78641 -7.64680 -7.13923 -6.38629 -3.97687 1.29988 2.20676 2.39224 3.15919 3.16942 3.23075 3.34197 3.47952 4.01446 4.36014 4.48612 4.62684 4.66105 4.91214 5.05546 5.12619 5.18975 5.30523 5.32613 5.41222 5.46138 5.55889 5.57307 5.66374 5.70600 5.83760 5.87541 5.90107 5.99550 6.13930 6.21589 6.29556 6.34748 6.44327 6.76067 6.95828 7.08298 7.13475 7.38795 7.52339 7.78262 7.84711 8.06536 8.44819 9.06365 9.78513 10.79453 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.003075 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.147320 B = 9103.636321 C =10041.858760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.054 4.054 6 C -0.217 4.217 7 C 0.536 3.464 8 O -0.516 6.516 9 N -0.666 5.666 10 C 0.174 3.826 11 C -0.236 4.236 12 C -0.059 4.059 13 C -0.246 4.246 14 C 0.167 3.833 15 O -0.174 6.174 16 C -0.391 4.391 17 H 0.093 0.907 18 C 0.038 3.962 19 N -0.861 5.861 20 Si 0.942 3.058 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.187 4.187 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.405 0.595 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.128 0.872 40 H 0.269 0.731 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.436 3.810 -16.186 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.049 4.049 3 C -0.196 4.196 4 C -0.196 4.196 5 C -0.074 4.074 6 C -0.238 4.238 7 C 0.326 3.674 8 O -0.392 6.392 9 N -0.310 5.310 10 C 0.081 3.919 11 C -0.257 4.257 12 C -0.078 4.078 13 C -0.266 4.266 14 C 0.112 3.888 15 O -0.077 6.077 16 C -0.467 4.467 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.208 4.208 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.240 0.760 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.145 0.855 40 H 0.079 0.921 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.180 4.034 -16.066 20.561 hybrid contribution -0.350 -0.522 0.784 1.005 sum -12.531 3.512 -15.282 20.073 Atomic orbital electron populations 1.22009 0.94101 1.02204 1.02188 1.19784 0.95967 0.95680 0.93421 1.21834 1.01594 0.94076 1.02139 1.21834 1.01566 1.00326 0.95882 1.23751 1.00608 0.90674 0.92361 1.22700 1.00906 1.04306 0.95913 1.18742 0.86332 0.79031 0.83324 1.90871 1.15576 1.56700 1.76072 1.43260 1.10103 1.53173 1.24420 1.17195 0.95043 0.92017 0.87650 1.20281 1.02876 0.99185 1.03354 1.20498 0.95120 0.97672 0.94531 1.21181 0.98031 1.01850 1.05509 1.19146 0.86233 0.91900 0.91528 1.83995 1.30000 1.56053 1.37700 1.21396 1.10857 1.13701 1.00765 0.88952 1.25307 0.95468 0.96779 0.99063 1.70069 1.15046 1.25798 1.38669 0.85640 0.78814 0.78928 0.79978 1.19097 1.20178 1.20175 1.20194 0.98435 1.04008 0.98138 0.92027 0.92232 0.92074 0.92070 0.92099 0.92222 0.92300 0.92091 0.92091 0.85372 0.85134 0.75960 0.87410 0.87068 0.85468 0.92108 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 7.13 37.16 0.26 -0.70 16 2 C -0.05 -0.38 0.99 -155.66 -0.15 -0.54 16 3 C -0.14 -1.03 8.46 37.16 0.31 -0.71 16 4 C -0.14 -1.00 8.46 37.16 0.31 -0.68 16 5 C -0.05 -0.59 8.33 -36.12 -0.30 -0.89 16 6 C -0.22 -2.49 9.00 -37.82 -0.34 -2.83 16 7 C 0.54 8.75 7.60 -12.68 -0.10 8.65 16 8 O -0.52 -10.99 13.66 5.26 0.07 -10.92 16 9 N -0.67 -10.16 5.33 -10.96 -0.06 -10.22 16 10 C 0.17 3.39 6.29 -83.75 -0.53 2.87 16 11 C -0.24 -4.18 9.96 -39.34 -0.39 -4.57 16 12 C -0.06 -1.11 10.03 -39.64 -0.40 -1.51 16 13 C -0.25 -5.57 9.17 -39.35 -0.36 -5.93 16 14 C 0.17 4.32 6.64 -39.14 -0.26 4.06 16 15 O -0.17 -5.27 9.76 0.05 0.00 -5.27 16 16 C -0.39 -11.32 9.49 30.89 0.29 -11.03 16 17 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -26.14 13.67 55.48 0.76 -25.38 16 20 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 24 C -0.19 -4.46 8.63 -39.20 -0.34 -4.80 16 25 H 0.06 0.40 7.50 -51.93 -0.39 0.01 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.39 7.50 -51.93 -0.39 0.00 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.46 8.14 -51.94 -0.42 0.04 16 31 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.13 1.63 7.49 -52.48 -0.39 1.24 16 35 H 0.13 1.08 5.75 -52.49 -0.30 0.78 16 36 H 0.41 4.39 8.80 -40.82 -0.36 4.03 16 37 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 38 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.13 2.85 5.63 -52.49 -0.30 2.55 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 41 H 0.13 3.43 6.23 -52.48 -0.33 3.10 16 LS Contribution 344.48 15.07 5.19 5.19 Total: -1.00 -34.66 344.48 -6.81 -41.47 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.67 Total: 6.75 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -2.08 Total: -17.64 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.70 Total: -35.60 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.07 Total: -16.19 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.66 -6.81 -41.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074482921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.816 kcal (2) G-P(sol) polarization free energy of solvation -34.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds