Wall clock time and date at job start Tue Mar 31 2020 06:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47165 * 2 1 4 4 C 1.53002 * 109.47433 * 239.99875 * 2 1 3 5 5 C 1.50700 * 109.46963 * 119.99910 * 2 1 3 6 6 C 1.33015 * 120.00123 * 0.02562 * 5 2 1 7 7 C 1.47066 * 119.99920 * 180.02562 * 6 5 2 8 8 O 1.21622 * 120.00079 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99695 * 179.97438 * 7 6 5 10 10 C 1.39833 * 119.99756 * 175.49970 * 9 7 6 11 11 C 1.38982 * 120.03938 * 215.15737 * 10 9 7 12 12 C 1.38154 * 120.06691 * 179.97438 * 11 10 9 13 13 C 1.38171 * 120.13891 * 359.78874 * 12 11 10 14 14 C 1.38919 * 120.07396 * 0.46258 * 13 12 11 15 15 O 1.35752 * 120.02671 * 179.79095 * 14 13 12 16 16 C 1.34828 * 117.00319 * 354.34698 * 15 14 13 17 17 H 1.07996 * 120.00048 * 5.02937 * 16 15 14 18 18 C 1.38653 * 120.00014 * 185.02229 * 16 15 14 19 19 N 1.31560 * 120.00042 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00079 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46783 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46973 * 120.00325 * 20 18 16 23 23 H 1.48505 * 109.46776 * 240.00001 * 20 18 16 24 24 C 1.38737 * 120.03795 * 35.13515 * 10 9 7 25 25 H 1.08994 * 109.47431 * 299.99979 * 1 2 3 26 26 H 1.09001 * 109.47296 * 60.00312 * 1 2 3 27 27 H 1.09004 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47161 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46988 * 299.99592 * 3 2 1 30 30 H 1.08989 * 109.47354 * 59.99778 * 3 2 1 31 31 H 1.09010 * 109.46914 * 300.00240 * 4 2 1 32 32 H 1.09001 * 109.47032 * 59.99652 * 4 2 1 33 33 H 1.08992 * 109.47363 * 180.02562 * 4 2 1 34 34 H 1.08006 * 119.99938 * 179.97438 * 5 2 1 35 35 H 1.07997 * 120.00216 * 359.97438 * 6 5 2 36 36 H 0.96993 * 120.00243 * 355.50425 * 9 7 6 37 37 H 1.08006 * 119.96770 * 359.97438 * 11 10 9 38 38 H 1.08003 * 119.93166 * 180.02562 * 12 11 10 39 39 H 1.08000 * 119.96408 * 180.23246 * 13 12 11 40 40 H 0.97005 * 120.00321 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.06919 * 0.03941 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1679 -1.2163 2.1058 7 6 1.6581 -1.9091 3.3069 8 8 2.8538 -2.0198 3.4996 9 7 0.7822 -2.4213 4.1940 10 6 1.2455 -3.1610 5.2864 11 6 0.5087 -4.2409 5.7582 12 6 0.9662 -4.9725 6.8371 13 6 2.1591 -4.6362 7.4478 14 6 2.8977 -3.5547 6.9843 15 8 4.0675 -3.2225 7.5876 16 6 4.3979 -3.9068 8.7013 17 1 3.7848 -4.7333 9.0290 18 6 5.5248 -3.5496 9.4258 19 7 6.2715 -2.5426 9.0268 20 14 5.9830 -4.4983 10.9685 21 1 4.9890 -5.5770 11.1996 22 1 7.3316 -5.0964 10.7995 23 1 5.9929 -3.5758 12.1322 24 6 2.4415 -2.8182 5.9003 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6767 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 3.0941 -0.8094 1.4012 35 1 0.1061 -1.1177 1.9349 36 1 -0.1694 -2.2768 4.0747 37 1 -0.4225 -4.5084 5.2809 38 1 0.3920 -5.8115 7.2017 39 1 2.5160 -5.2123 8.2886 40 1 7.0597 -2.2924 9.5339 41 1 3.0159 -1.9793 5.5359 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074482921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:19 Heat of formation + Delta-G solvation = -51.979966 kcal Electronic energy + Delta-G solvation = -21889.466657 eV Core-core repulsion = 18541.368155 eV Total energy + Delta-G solvation = -3348.098503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.59062 -40.38779 -38.85143 -38.07530 -35.55208 -34.27288 -32.75389 -31.12627 -30.00768 -28.19047 -28.11055 -27.37166 -25.38111 -23.54388 -22.85684 -21.31699 -20.05291 -19.28254 -19.01101 -18.33746 -17.19981 -16.77393 -16.45299 -16.13620 -16.00704 -15.74301 -15.49495 -15.38650 -15.00975 -14.69650 -14.42537 -14.24737 -13.60829 -13.24931 -13.20759 -13.17594 -12.98910 -12.84338 -12.70485 -12.53818 -12.37606 -12.09497 -11.95850 -11.93579 -11.62613 -11.45274 -11.28154 -10.81450 -10.75975 -10.46066 -9.35812 -8.88411 -8.47729 -6.17596 0.14053 0.62906 0.70982 1.33720 1.43492 1.53842 2.05207 2.19215 2.22522 2.82915 3.14355 3.42006 3.63631 3.84434 4.06735 4.07875 4.14020 4.24505 4.34927 4.41097 4.42333 4.69895 4.73193 4.76669 4.78581 4.91454 4.99462 5.04229 5.04979 5.10569 5.13466 5.21791 5.27041 5.36505 5.41972 5.45391 5.50068 5.55453 5.62375 5.72744 6.02226 6.19552 6.50030 6.95804 7.18550 7.78740 8.76541 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.003075 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.147320 B = 9103.636321 C =10041.858760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.047 4.047 6 C -0.216 4.216 7 C 0.529 3.471 8 O -0.578 6.578 9 N -0.649 5.649 10 C 0.180 3.820 11 C -0.203 4.203 12 C -0.048 4.048 13 C -0.255 4.255 14 C 0.126 3.874 15 O -0.237 6.237 16 C -0.414 4.414 17 H 0.107 0.893 18 C -0.028 4.028 19 N -0.925 5.925 20 Si 1.025 2.975 21 H -0.246 1.246 22 H -0.269 1.269 23 H -0.267 1.267 24 C -0.216 4.216 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.174 0.826 36 H 0.432 0.568 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.124 0.876 40 H 0.272 0.728 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.773 2.288 -17.415 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.045 4.045 3 C -0.197 4.197 4 C -0.196 4.196 5 C -0.067 4.067 6 C -0.237 4.237 7 C 0.321 3.679 8 O -0.458 6.458 9 N -0.295 5.295 10 C 0.086 3.914 11 C -0.224 4.224 12 C -0.067 4.067 13 C -0.275 4.275 14 C 0.075 3.925 15 O -0.143 6.143 16 C -0.490 4.490 17 H 0.124 0.876 18 C -0.225 4.225 19 N -0.564 5.564 20 Si 0.844 3.156 21 H -0.169 1.169 22 H -0.194 1.194 23 H -0.192 1.192 24 C -0.238 4.238 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.192 0.808 36 H 0.272 0.728 37 H 0.183 0.817 38 H 0.179 0.821 39 H 0.142 0.858 40 H 0.081 0.919 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.630 2.510 -17.345 24.160 hybrid contribution 0.760 -0.027 0.882 1.165 sum -15.870 2.483 -16.463 23.001 Atomic orbital electron populations 1.22026 0.92217 1.02999 1.03245 1.19846 0.97439 0.95390 0.91828 1.21859 1.01077 0.93891 1.02922 1.21851 1.01068 1.00469 0.96223 1.23965 0.99323 0.89908 0.93548 1.22710 1.02888 1.04374 0.93692 1.19657 0.85578 0.78236 0.84433 1.90870 1.18442 1.58979 1.77503 1.43174 1.11480 1.52161 1.22701 1.17380 0.93422 0.92680 0.87943 1.20923 1.03588 0.96271 1.01588 1.21059 0.93392 0.98509 0.93721 1.21341 0.99415 1.00846 1.05917 1.19680 0.86383 0.93907 0.92541 1.83962 1.32857 1.58234 1.39297 1.21970 1.11648 1.14317 1.01043 0.87554 1.26748 0.94950 0.97876 1.02941 1.70239 1.16299 1.28688 1.41136 0.84447 0.78859 0.77693 0.74612 1.16940 1.19437 1.19225 1.20213 1.00586 1.03952 0.99002 0.91624 0.90642 0.91364 0.93065 0.90069 0.92658 0.92389 0.90120 0.93048 0.88384 0.80850 0.72779 0.81666 0.82069 0.85812 0.91876 0.88386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 7.13 71.98 0.51 -0.88 16 2 C -0.04 -0.63 0.99 -52.93 -0.05 -0.68 16 3 C -0.14 -1.87 8.46 71.98 0.61 -1.26 16 4 C -0.14 -1.75 8.46 71.98 0.61 -1.14 16 5 C -0.05 -1.02 8.33 24.52 0.20 -0.81 16 6 C -0.22 -4.63 9.00 23.42 0.21 -4.41 16 7 C 0.53 17.26 7.60 86.56 0.66 17.92 16 8 O -0.58 -26.31 13.66 -4.10 -0.06 -26.36 16 9 N -0.65 -18.50 5.33 -306.83 -1.63 -20.14 16 10 C 0.18 6.79 6.29 38.16 0.24 7.03 16 11 C -0.20 -6.24 9.96 22.43 0.22 -6.01 16 12 C -0.05 -1.63 10.03 22.23 0.22 -1.41 16 13 C -0.26 -11.56 9.17 22.42 0.21 -11.35 16 14 C 0.13 6.91 6.64 22.56 0.15 7.06 16 15 O -0.24 -15.56 9.76 -22.74 -0.22 -15.79 16 16 C -0.41 -25.44 9.49 67.92 0.64 -24.79 16 17 H 0.11 5.90 5.20 -2.91 -0.02 5.88 16 18 C -0.03 -1.70 5.49 84.83 0.47 -1.23 16 19 N -0.93 -60.13 13.67 21.61 0.30 -59.84 16 20 Si 1.03 44.56 29.55 68.60 2.03 46.58 16 21 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 24 C -0.22 -10.91 8.63 22.51 0.19 -10.72 16 25 H 0.06 0.59 7.50 -2.39 -0.02 0.57 16 26 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.07 0.57 7.50 -2.38 -0.02 0.55 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.74 8.14 -2.38 -0.02 0.73 16 32 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.10 2.71 7.49 -2.91 -0.02 2.69 16 35 H 0.17 2.16 5.75 -2.91 -0.02 2.15 16 36 H 0.43 7.51 8.80 -92.71 -0.82 6.69 16 37 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 38 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 39 H 0.12 5.58 5.63 -2.91 -0.02 5.57 16 40 H 0.27 16.09 8.31 -92.70 -0.77 15.32 16 41 H 0.10 5.58 6.23 -2.91 -0.02 5.56 16 Total: -1.00 -86.79 344.48 5.73 -81.06 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.23 Total: 27.17 kcal Atomic # 6 Polarization: -37.79 SS G_CDS: 5.10 Total: -32.69 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -1.34 Total: -79.98 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -0.28 Total: -42.15 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -86.79 5.73 -81.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074482921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.078 kcal (2) G-P(sol) polarization free energy of solvation -86.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds