Wall clock time and date at job start Tue Mar 31 2020 06:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 H 1.09001 * 110.88428 * 305.70496 * 5 4 2 7 7 C 1.55160 * 111.00244 * 69.58224 * 5 4 2 8 8 C 1.54324 * 102.94145 * 153.57983 * 7 5 4 9 9 N 1.47027 * 107.26932 * 337.80704 * 8 7 5 10 10 S 1.65599 * 125.64740 * 178.99837 * 9 8 7 11 11 O 1.42096 * 104.28054 * 206.04317 * 10 9 8 12 12 O 1.42103 * 104.27717 * 333.90370 * 10 9 8 13 13 C 1.81403 * 104.44941 * 89.97290 * 10 9 8 14 14 C 1.53005 * 109.47210 * 180.02562 * 13 10 9 15 15 C 1.50696 * 109.46829 * 180.02562 * 14 13 10 16 16 H 1.07991 * 120.00481 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99735 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00034 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00415 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46726 * 0.02562 * 19 17 15 21 21 H 1.48487 * 109.47186 * 119.99738 * 19 17 15 22 22 H 1.48496 * 109.47264 * 240.00412 * 19 17 15 23 23 C 1.47465 * 108.72374 * 358.97511 * 9 8 7 24 24 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 25 25 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 27 27 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 28 28 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 29 29 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 31 31 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 32 32 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 33 33 H 1.08994 * 110.71710 * 271.93845 * 7 5 4 34 34 H 1.08997 * 110.71698 * 35.21481 * 7 5 4 35 35 H 1.08998 * 109.88343 * 97.22246 * 8 7 5 36 36 H 1.09001 * 109.87878 * 218.23979 * 8 7 5 37 37 H 1.09003 * 109.47605 * 300.00277 * 13 10 9 38 38 H 1.08998 * 109.47038 * 59.99959 * 13 10 9 39 39 H 1.08999 * 109.46574 * 300.00231 * 14 13 10 40 40 H 1.08992 * 109.46926 * 60.00174 * 14 13 10 41 41 H 0.96995 * 120.00249 * 180.02562 * 18 17 15 42 42 H 1.08999 * 110.35142 * 265.25238 * 23 9 8 43 43 H 1.09003 * 110.40372 * 142.91649 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8311 -1.1881 6 1 4.0193 0.1486 -1.0405 7 6 4.0069 -1.8221 -0.0791 8 6 5.3775 -2.3186 -0.5856 9 7 5.4112 -2.0995 -2.0391 10 16 6.6841 -2.4499 -3.0387 11 8 6.5289 -1.5544 -4.1309 12 8 7.8234 -2.3824 -2.1921 13 6 6.3858 -4.1588 -3.5693 14 6 7.5085 -4.6045 -4.5085 15 6 7.2603 -6.0239 -4.9497 16 1 6.3893 -6.5551 -4.5955 17 6 8.1453 -6.6444 -5.8058 18 7 9.2063 -5.9977 -6.2368 19 14 7.8382 -8.4041 -6.3523 20 1 6.5858 -8.9041 -5.7304 21 1 7.7076 -8.4475 -7.8308 22 1 8.9766 -9.2592 -5.9306 23 6 4.1236 -1.5166 -2.4599 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9562 0.8901 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6053 -1.7198 -1.2953 32 1 1.7516 -0.1582 -2.1370 33 1 4.1119 -1.3091 0.8769 34 1 3.3025 -2.6499 0.0015 35 1 6.1768 -1.7529 -0.1069 36 1 5.4915 -3.3801 -0.3657 37 1 6.3621 -4.8114 -2.6966 38 1 5.4307 -4.2156 -4.0915 39 1 7.5325 -3.9519 -5.3812 40 1 8.4633 -4.5478 -3.9859 41 1 9.8287 -6.4340 -6.8393 42 1 3.4452 -2.2999 -2.7978 43 1 4.2793 -0.7817 -3.2497 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074970518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:35 Heat of formation + Delta-G solvation = -104.216666 kcal Electronic energy + Delta-G solvation = -21524.155926 eV Core-core repulsion = 18309.236221 eV Total energy + Delta-G solvation = -3214.919705 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.11133 -36.58017 -36.20571 -35.40619 -33.88018 -31.36744 -31.14302 -29.46543 -27.45970 -25.96544 -25.53576 -22.44007 -21.45250 -21.15510 -19.76188 -18.50024 -17.53939 -16.50656 -16.46267 -15.47838 -15.35671 -14.92190 -14.58126 -14.43446 -14.02060 -13.74076 -13.46164 -13.21886 -12.96342 -12.87414 -12.51573 -12.48707 -12.05614 -11.78557 -11.74244 -11.57451 -11.51026 -11.33684 -11.23538 -11.13587 -11.08882 -10.95217 -10.68476 -10.59871 -10.51754 -10.38961 -10.37927 -9.75558 -9.29606 -8.69883 -8.50557 -6.12356 -4.17875 0.76258 3.08841 3.25306 3.32428 3.36015 4.19992 4.30618 4.38443 4.42672 4.54041 4.64620 4.74545 4.83350 4.99743 5.21501 5.22797 5.25388 5.33035 5.35106 5.42835 5.51778 5.54516 5.60660 5.65269 5.66782 5.68759 5.73390 5.77597 5.83356 5.89636 5.94493 6.02357 6.14312 6.20292 6.27360 6.50334 6.54774 7.30626 7.36694 7.80958 8.17982 8.85822 9.46856 10.98769 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028443 B = 0.003327 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.196826 B = 8413.663058 C = 8870.107852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.151 4.151 4 C -0.106 4.106 5 C -0.100 4.100 6 H 0.087 0.913 7 C -0.123 4.123 8 C 0.120 3.880 9 N -1.019 6.019 10 S 2.606 3.394 11 O -0.963 6.963 12 O -0.963 6.963 13 C -0.589 4.589 14 C 0.027 3.973 15 C -0.519 4.519 16 H 0.062 0.938 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.119 3.881 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.265 0.735 42 H 0.065 0.935 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.419 11.004 13.677 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.208 4.208 4 C -0.144 4.144 5 C -0.120 4.120 6 H 0.105 0.895 7 C -0.162 4.162 8 C -0.006 4.006 9 N -0.856 5.856 10 S 2.706 3.294 11 O -0.953 6.953 12 O -0.953 6.953 13 C -0.722 4.722 14 C -0.012 4.012 15 C -0.559 4.559 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.007 4.007 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.477 11.603 13.316 23.484 hybrid contribution -0.453 -1.591 -0.337 1.689 sum -15.930 10.011 12.978 22.857 Atomic orbital electron populations 1.21846 0.95387 1.01656 1.01629 1.21111 0.95462 0.96396 0.98540 1.21908 1.01370 0.95945 1.01556 1.21611 0.93791 1.00911 0.98049 1.22460 0.95595 0.99304 0.94646 0.89504 1.22705 0.96044 0.98970 0.98444 1.21648 0.98172 1.00684 0.80093 1.58875 1.30628 1.78367 1.17727 1.05260 0.72467 0.78503 0.73185 1.93527 1.85452 1.62236 1.54135 1.93530 1.47653 1.87581 1.66570 1.30491 1.10747 1.20132 1.10854 1.18973 0.90517 0.98672 0.93013 1.21044 1.09210 0.97101 1.28526 0.92003 1.25080 0.94979 0.98517 0.95967 1.69967 1.12485 1.37274 1.33148 0.86406 0.78272 0.84087 0.78481 1.19647 1.20784 1.20780 1.22054 0.84086 0.97171 0.97344 0.92730 0.92734 0.92906 0.91054 0.93019 0.92303 0.92700 0.91474 0.91473 0.90441 0.90608 0.91280 0.91752 0.86339 0.86318 0.94843 0.94846 0.92574 0.91683 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.10 -0.63 2.86 -90.62 -0.26 -0.89 16 3 C -0.15 -1.00 8.97 37.16 0.33 -0.66 16 4 C -0.11 -0.77 4.19 -26.73 -0.11 -0.88 16 5 C -0.10 -0.90 2.86 -88.47 -0.25 -1.16 16 6 H 0.09 0.80 6.42 -51.93 -0.33 0.47 16 7 C -0.12 -1.05 5.69 -24.89 -0.14 -1.20 16 8 C 0.12 1.40 6.90 -3.06 -0.02 1.38 16 9 N -1.02 -14.51 3.62 -111.39 -0.40 -14.91 16 10 S 2.61 48.93 5.65 -107.50 -0.61 48.32 16 11 O -0.96 -20.59 17.28 -57.54 -0.99 -21.59 16 12 O -0.96 -20.70 17.60 -57.54 -1.01 -21.71 16 13 C -0.59 -11.63 6.12 37.16 0.23 -11.40 16 14 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 15 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 16 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 19 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 C 0.12 1.40 6.54 -2.51 -0.02 1.38 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.46 7.44 -51.93 -0.39 0.08 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.41 6.48 -51.93 -0.34 0.07 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.48 8.04 -51.93 -0.42 0.06 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.08 0.58 7.96 -51.93 -0.41 0.17 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 38 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 39 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 42 H 0.06 0.67 8.04 -51.93 -0.42 0.26 16 43 H 0.08 1.02 7.67 -51.93 -0.40 0.62 16 LS Contribution 355.04 15.07 5.35 5.35 Total: -1.00 -34.27 355.04 -10.14 -44.41 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -7.74 Total: -3.45 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: -0.45 Total: -26.75 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.33 Total: -40.91 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -2.01 Total: -43.30 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 48.93 SS G_CDS: -0.61 Total: 48.32 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.27 -10.14 -44.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074970518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.805 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds