Wall clock time and date at job start Tue Mar 31 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.55627 * 2 1 4 4 C 1.53301 * 109.50871 * 239.87728 * 2 1 3 5 5 N 1.47149 * 108.38271 * 292.37657 * 4 2 1 6 6 C 1.34775 * 120.98373 * 129.49030 * 5 4 2 7 7 O 1.21550 * 119.99831 * 354.61141 * 6 5 4 8 8 C 1.47885 * 120.00403 * 174.60271 * 6 5 4 9 9 C 1.39919 * 120.02427 * 147.26973 * 8 6 5 10 10 C 1.38327 * 120.36175 * 180.02562 * 9 8 6 11 11 C 1.37754 * 120.40824 * 359.97438 * 10 9 8 12 12 C 1.40748 * 120.04286 * 0.02562 * 11 10 9 13 13 C 1.41437 * 120.18062 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99796 * 156.50752 * 13 12 11 15 15 C 1.39937 * 119.99803 * 336.50841 * 13 12 11 16 16 N 1.30824 * 120.00274 * 343.52578 * 15 13 12 17 17 Si 1.86798 * 119.99644 * 163.52407 * 15 13 12 18 18 H 1.48495 * 109.47279 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47046 * 120.00275 * 17 15 13 20 20 H 1.48503 * 109.47038 * 240.00059 * 17 15 13 21 21 C 1.38993 * 120.02498 * 327.00277 * 8 6 5 22 22 C 1.47156 * 118.04005 * 309.46542 * 5 4 2 23 23 C 1.53299 * 108.37798 * 50.53602 * 22 5 4 24 24 O 1.42956 * 109.51159 * 120.12917 * 2 1 3 25 25 H 1.09003 * 109.46892 * 299.87554 * 1 2 3 26 26 H 1.09006 * 109.47093 * 59.86944 * 1 2 3 27 27 H 1.08997 * 109.47186 * 179.86822 * 1 2 3 28 28 H 1.08996 * 109.47786 * 180.12694 * 3 2 1 29 29 H 1.08997 * 109.47288 * 300.13414 * 3 2 1 30 30 H 1.09005 * 109.46757 * 60.12605 * 3 2 1 31 31 H 1.09001 * 109.68450 * 52.10194 * 4 2 1 32 32 H 1.09006 * 109.67599 * 172.65835 * 4 2 1 33 33 H 1.08001 * 119.82041 * 0.02562 * 9 8 6 34 34 H 1.08002 * 119.79934 * 180.02562 * 10 9 8 35 35 H 1.08003 * 119.97711 * 180.02562 * 11 10 9 36 36 H 0.96995 * 120.00251 * 180.02562 * 16 15 13 37 37 H 1.07992 * 120.20397 * 359.97438 * 21 8 6 38 38 H 1.08993 * 109.68242 * 290.81922 * 22 5 4 39 39 H 1.08997 * 109.68594 * 170.25583 * 22 5 4 40 40 H 1.09000 * 109.51311 * 67.62634 * 23 22 5 41 41 H 1.09002 * 109.50808 * 187.77176 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4417 0.0000 4 6 2.0420 -0.7252 -1.2499 5 7 1.6959 -2.1507 -1.1337 6 6 1.0715 -2.7971 -2.1381 7 8 0.6983 -2.1817 -3.1176 8 6 0.8405 -4.2550 -2.0485 9 6 -0.2998 -4.8203 -2.6299 10 6 -0.5230 -6.1831 -2.5498 11 6 0.3745 -6.9995 -1.8975 12 6 1.5273 -6.4490 -1.3065 13 6 2.4510 -7.2847 -0.6365 14 1 3.4775 -6.9699 -0.5193 15 6 2.0349 -8.5192 -0.1256 16 7 0.7596 -8.7678 0.0269 17 14 3.3006 -9.8123 0.3386 18 1 4.6642 -9.2885 0.0716 19 1 3.1686 -10.1385 1.7813 20 1 3.0749 -11.0381 -0.4688 21 6 1.7588 -5.0656 -1.3915 22 6 2.0521 -2.8498 0.1112 23 6 1.5396 -2.0210 1.2946 24 8 2.0075 -0.6764 1.1654 25 1 -0.3633 0.5119 0.8911 26 1 -0.3633 0.5159 -0.8889 27 1 -0.3633 -1.0276 -0.0024 28 1 3.1321 1.4402 -0.0023 29 1 1.6777 1.9568 -0.8887 30 1 1.6814 1.9554 0.8912 31 1 1.5704 -0.3040 -2.1377 32 1 3.1241 -0.6147 -1.3209 33 1 -1.0095 -4.1891 -3.1439 34 1 -1.4060 -6.6098 -3.0022 35 1 0.1935 -8.0627 -1.8395 36 1 0.4712 -9.6233 0.3813 37 1 2.6427 -4.6343 -0.9454 38 1 3.1351 -2.9532 0.1771 39 1 1.5871 -3.8355 0.1246 40 1 0.4496 -2.0284 1.2993 41 1 1.9113 -2.4480 2.2261 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078878661.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:10 Heat of formation + Delta-G solvation = -53.593876 kcal Electronic energy + Delta-G solvation = -23541.154620 eV Core-core repulsion = 20192.986133 eV Total energy + Delta-G solvation = -3348.168487 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.42157 -38.50413 -37.04825 -34.54990 -33.84330 -33.58956 -30.11070 -29.89862 -28.94118 -27.40289 -26.20419 -25.42199 -23.40544 -22.07667 -20.87601 -19.82393 -19.00581 -17.44361 -16.52540 -16.27078 -15.71644 -15.42896 -15.17553 -14.97900 -14.63160 -14.40099 -13.83446 -13.47208 -13.18664 -12.98315 -12.93994 -12.43966 -12.36980 -12.06723 -11.96343 -11.79270 -11.69392 -11.41203 -11.27448 -11.21994 -11.03644 -10.78515 -10.54682 -10.34491 -10.29162 -9.91399 -9.59140 -9.31281 -9.09368 -8.24538 -7.65001 -7.57962 -6.88421 -4.51658 2.19597 2.65305 3.00820 3.05170 3.07828 3.24323 3.64423 3.75245 3.83966 4.50855 4.66410 4.85986 4.88967 5.09455 5.26457 5.31430 5.47037 5.51382 5.56638 5.59601 5.65854 5.73237 5.82716 5.85695 5.98057 6.06518 6.09114 6.14031 6.24104 6.34937 6.67667 6.74233 6.85414 6.97203 7.10810 7.23829 7.28562 7.56516 7.74341 7.83636 7.90473 8.03752 8.44244 8.68772 8.72459 8.76395 10.05017 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021359 B = 0.004628 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.594852 B = 6049.105099 C = 6844.950458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 C -0.135 4.135 4 C 0.091 3.909 5 N -0.613 5.613 6 C 0.570 3.430 7 O -0.555 6.555 8 C -0.114 4.114 9 C -0.180 4.180 10 C -0.113 4.113 11 C -0.139 4.139 12 C 0.100 3.900 13 C -0.460 4.460 14 H 0.080 0.920 15 C 0.076 3.924 16 N -0.794 5.794 17 Si 0.909 3.091 18 H -0.260 1.260 19 H -0.274 1.274 20 H -0.272 1.272 21 C -0.201 4.201 22 C 0.058 3.942 23 C 0.043 3.957 24 O -0.375 6.375 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.282 0.718 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.058 0.942 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 10.260 3.493 10.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.058 3.942 3 C -0.192 4.192 4 C -0.032 4.032 5 N -0.347 5.347 6 C 0.363 3.637 7 O -0.434 6.434 8 C -0.117 4.117 9 C -0.200 4.200 10 C -0.132 4.132 11 C -0.159 4.159 12 C 0.098 3.902 13 C -0.489 4.489 14 H 0.098 0.902 15 C -0.142 4.142 16 N -0.419 5.419 17 Si 0.733 3.267 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.197 1.197 21 C -0.221 4.221 22 C -0.065 4.065 23 C -0.034 4.034 24 O -0.295 6.295 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.144 0.856 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.091 0.909 39 H 0.147 0.853 40 H 0.077 0.923 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.178 10.489 3.193 11.028 hybrid contribution 0.344 -0.870 0.151 0.947 sum 1.522 9.620 3.343 10.297 Atomic orbital electron populations 1.22347 0.95281 1.03114 1.02424 1.21844 0.93738 0.92847 0.85730 1.21704 1.01931 0.92936 1.02649 1.22203 1.00342 0.81681 0.99002 1.47962 1.59965 1.09875 1.16911 1.18976 0.75305 0.88105 0.81349 1.90656 1.51677 1.68982 1.32051 1.19252 0.98525 0.90051 1.03845 1.20393 0.98437 0.94879 1.06286 1.20690 0.98889 0.93279 1.00331 1.21641 0.95840 0.99973 0.98442 1.17555 0.92398 0.90428 0.89837 1.19599 0.97207 1.00635 1.31486 0.90213 1.25904 0.95825 0.99031 0.93439 1.69788 1.15850 1.23582 1.32673 0.86245 0.81580 0.80222 0.78645 1.18350 1.19907 1.19667 1.21378 1.00565 0.93792 1.06406 1.23083 1.01403 0.98982 0.82994 1.23088 0.99365 0.82126 0.98791 1.87948 1.72391 1.25839 1.43289 0.91942 0.91470 0.91729 0.91671 0.90947 0.91570 0.88469 0.91258 0.88475 0.88612 0.85617 0.90737 0.87463 0.90902 0.85263 0.92332 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 8.09 37.16 0.30 -1.93 16 2 C 0.10 1.27 1.11 -90.46 -0.10 1.17 16 3 C -0.13 -1.34 8.85 37.16 0.33 -1.01 16 4 C 0.09 1.34 5.32 -3.53 -0.02 1.32 16 5 N -0.61 -10.66 2.53 -173.37 -0.44 -11.10 16 6 C 0.57 11.97 7.42 -12.31 -0.09 11.88 16 7 O -0.55 -12.81 16.23 5.32 0.09 -12.72 16 8 C -0.11 -2.55 5.36 -105.04 -0.56 -3.12 16 9 C -0.18 -4.09 9.61 -38.92 -0.37 -4.46 16 10 C -0.11 -2.57 10.01 -39.73 -0.40 -2.97 16 11 C -0.14 -3.42 8.70 -38.81 -0.34 -3.75 16 12 C 0.10 2.47 5.59 -106.87 -0.60 1.88 16 13 C -0.46 -11.26 9.06 -37.73 -0.34 -11.60 16 14 H 0.08 1.88 7.90 -52.48 -0.41 1.46 16 15 C 0.08 1.77 5.18 -17.34 -0.09 1.68 16 16 N -0.79 -19.11 10.80 55.55 0.60 -18.51 16 17 Si 0.91 17.55 29.59 -169.99 -5.03 12.52 16 18 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 19 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 20 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 21 C -0.20 -4.55 7.13 -38.44 -0.27 -4.82 16 22 C 0.06 0.91 4.90 -3.53 -0.02 0.90 16 23 C 0.04 0.60 6.60 37.31 0.25 0.84 16 24 O -0.38 -5.27 10.23 -35.23 -0.36 -5.63 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.96 6.11 -51.93 -0.32 0.64 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.10 1.50 7.06 -51.93 -0.37 1.13 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.10 2.13 7.96 -52.49 -0.42 1.71 16 34 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 35 H 0.13 3.16 6.01 -52.48 -0.32 2.85 16 36 H 0.28 6.17 8.30 -40.82 -0.34 5.83 16 37 H 0.11 2.23 5.72 -52.49 -0.30 1.93 16 38 H 0.07 1.09 7.94 -51.93 -0.41 0.68 16 39 H 0.13 2.30 4.57 -51.93 -0.24 2.07 16 40 H 0.06 0.81 6.25 -51.93 -0.32 0.49 16 41 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -27.65 326.51 -8.17 -35.83 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -5.62 Total: 8.68 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -2.33 Total: -13.99 kcal Atomic # 7 Polarization: -29.77 SS G_CDS: 0.16 Total: -29.60 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.27 Total: -18.36 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.65 -8.17 -35.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078878661.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.766 kcal (2) G-P(sol) polarization free energy of solvation -27.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds