Wall clock time and date at job start Tue Mar 31 2020 07:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.46933 * 2 1 4 4 C 1.53004 * 109.47289 * 179.97438 * 3 2 1 5 5 H 1.09000 * 115.55885 * 29.30977 * 4 3 2 6 6 C 1.52993 * 117.49988 * 243.62535 * 4 3 2 7 7 C 1.52994 * 117.50029 * 174.99909 * 4 3 2 8 8 H 1.08999 * 117.52027 * 0.02562 * 7 4 3 9 9 C 1.50704 * 117.49984 * 214.97924 * 7 4 3 10 10 O 1.21287 * 119.99739 * 359.97438 * 9 7 4 11 11 N 1.34778 * 120.00006 * 179.97438 * 9 7 4 12 12 C 1.39926 * 119.99707 * 174.79748 * 11 9 7 13 13 C 1.38962 * 120.03368 * 326.28472 * 12 11 9 14 14 C 1.38159 * 120.06344 * 180.02562 * 13 12 11 15 15 C 1.38172 * 120.13901 * 359.75099 * 14 13 12 16 16 C 1.38911 * 120.06788 * 0.50636 * 15 14 13 17 17 O 1.35754 * 120.02932 * 179.77034 * 16 15 14 18 18 C 1.34824 * 116.99805 * 185.63971 * 17 16 15 19 19 H 1.08002 * 120.00350 * 5.39825 * 18 17 16 20 20 C 1.38653 * 120.00176 * 185.13193 * 18 17 16 21 21 N 1.31556 * 119.99688 * 0.26709 * 20 18 17 22 22 Si 1.86801 * 120.00222 * 180.27613 * 20 18 17 23 23 H 1.48504 * 109.47366 * 59.99290 * 22 20 18 24 24 H 1.48506 * 109.47132 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47048 * 299.99286 * 22 20 18 26 26 C 1.38712 * 120.03418 * 146.31525 * 12 11 9 27 27 H 1.09003 * 109.47042 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47806 * 300.00128 * 1 2 3 29 29 H 1.09007 * 109.47167 * 60.00349 * 1 2 3 30 30 H 1.08997 * 109.47806 * 239.99872 * 2 1 3 31 31 H 1.09007 * 109.47167 * 119.99651 * 2 1 3 32 32 H 1.08998 * 109.47256 * 60.00095 * 3 2 1 33 33 H 1.08998 * 109.47361 * 299.99401 * 3 2 1 34 34 H 1.09003 * 117.50104 * 145.02185 * 6 4 3 35 35 H 1.08997 * 117.50399 * 359.97438 * 6 4 3 36 36 H 0.96998 * 119.99932 * 354.79967 * 11 9 7 37 37 H 1.07993 * 119.97294 * 0.05091 * 13 12 11 38 38 H 1.08001 * 119.93410 * 180.02562 * 14 13 12 39 39 H 1.07998 * 119.96222 * 180.25070 * 15 14 13 40 40 H 0.97003 * 119.99542 * 180.02562 * 21 20 18 41 41 H 1.08001 * 120.06716 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 4.0404 0.5851 -0.4804 6 6 4.2758 2.0457 1.2167 7 6 4.2763 2.7945 -0.1176 8 1 3.6514 3.6842 -0.1954 9 6 5.5695 2.8388 -0.8902 10 8 6.0125 1.8261 -1.3895 11 7 6.2337 4.0036 -1.0262 12 6 7.4867 4.0258 -1.6487 13 6 8.3526 2.9482 -1.5077 14 6 9.5901 2.9697 -2.1215 15 6 9.9687 4.0598 -2.8814 16 6 9.1098 5.1425 -3.0218 17 8 9.4844 6.2151 -3.7647 18 6 8.6561 7.2789 -3.7650 19 1 7.7870 7.2868 -3.1239 20 6 8.9229 8.3651 -4.5844 21 7 9.9815 8.3556 -5.3653 22 14 7.7794 9.8422 -4.5791 23 1 7.7305 10.4256 -3.2143 24 1 8.2827 10.8613 -5.5349 25 1 6.4161 9.4142 -4.9836 26 6 7.8661 5.1239 -2.4066 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.2108 1.5851 1.5356 35 1 3.6503 2.4428 2.0161 36 1 5.8431 4.8264 -0.6927 37 1 8.0578 2.0928 -0.9181 38 1 10.2613 2.1308 -2.0109 39 1 10.9352 4.0719 -3.3633 40 1 10.1683 9.1157 -5.9383 41 1 7.1948 5.9627 -2.5175 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079601770.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:29 Heat of formation + Delta-G solvation = -28.060453 kcal Electronic energy + Delta-G solvation = -21741.076166 eV Core-core repulsion = 18394.014891 eV Total energy + Delta-G solvation = -3347.061275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.39362 -38.89064 -37.57402 -36.24938 -34.20068 -34.10936 -32.24273 -29.49739 -28.69572 -27.68898 -25.39380 -24.45603 -22.30731 -21.83423 -21.49684 -20.64533 -19.81483 -17.99420 -17.72258 -17.03462 -15.65031 -15.51987 -15.29187 -14.99789 -14.65608 -14.53468 -14.14384 -13.91074 -13.61719 -13.51956 -13.07766 -12.93942 -12.54696 -12.40443 -12.26492 -11.76911 -11.60185 -11.53437 -11.32705 -11.13988 -11.10805 -10.95259 -10.81331 -10.48156 -10.46337 -10.22638 -9.87442 -9.62502 -9.38493 -8.81284 -7.73525 -7.16234 -6.45368 -4.05191 1.93107 2.36098 2.70510 3.11166 3.12279 3.15328 3.19116 3.65307 3.95273 4.34141 4.51249 4.58603 4.59893 4.79162 4.86369 4.97172 5.01073 5.09864 5.23738 5.27362 5.43086 5.45481 5.51692 5.56502 5.69096 5.74887 5.76269 5.93515 5.97231 5.98469 6.07417 6.14175 6.25252 6.28090 6.63123 6.97178 6.98865 7.11499 7.30254 7.41421 7.70774 7.80976 7.98586 8.33196 8.99777 9.70189 10.72608 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.003111 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.558261 B = 8998.846479 C =10104.289849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.117 4.117 5 H 0.119 0.881 6 C -0.148 4.148 7 C -0.190 4.190 8 H 0.124 0.876 9 C 0.540 3.460 10 O -0.521 6.521 11 N -0.666 5.666 12 C 0.180 3.820 13 C -0.206 4.206 14 C -0.063 4.063 15 C -0.200 4.200 16 C 0.168 3.832 17 O -0.176 6.176 18 C -0.393 4.393 19 H 0.089 0.911 20 C 0.040 3.960 21 N -0.862 5.862 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.256 4.256 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.407 0.593 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.271 0.729 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.988 -10.431 12.650 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.128 4.128 4 C -0.135 4.135 5 H 0.137 0.863 6 C -0.185 4.185 7 C -0.212 4.212 8 H 0.142 0.858 9 C 0.327 3.673 10 O -0.396 6.396 11 N -0.310 5.310 12 C 0.088 3.912 13 C -0.227 4.227 14 C -0.082 4.082 15 C -0.220 4.220 16 C 0.114 3.886 17 O -0.079 6.079 18 C -0.469 4.469 19 H 0.107 0.893 20 C -0.165 4.165 21 N -0.497 5.497 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.278 4.278 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.242 0.758 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.080 0.920 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.393 -10.957 11.997 21.706 hybrid contribution -0.829 1.374 0.090 1.607 sum -15.222 -9.583 12.087 21.671 Atomic orbital electron populations 1.21782 0.95892 1.01627 1.01775 1.21501 0.95627 0.96486 1.02393 1.21253 0.91888 0.97416 1.02244 1.22460 0.94683 0.95402 1.00982 0.86324 1.23112 1.03149 1.01994 0.90234 1.22283 0.97668 0.99103 1.02108 0.85846 1.19711 0.84635 0.83216 0.79751 1.90711 1.68181 1.33875 1.46854 1.43435 1.18543 1.10493 1.58479 1.17419 0.83798 0.95693 0.94340 1.20520 0.94644 0.99589 1.07927 1.20530 0.95287 0.96640 0.95742 1.20249 1.00758 0.94232 1.06776 1.19083 0.91271 0.88187 0.90098 1.84019 1.45235 1.20351 1.58282 1.21214 1.07689 0.92817 1.25174 0.89336 1.25276 0.97320 0.98641 0.95241 1.70028 1.25141 1.31171 1.23350 0.85799 0.79418 0.79751 0.78543 1.19534 1.20254 1.19565 1.20818 0.99542 1.01049 1.06349 0.92757 0.92823 0.92707 0.91721 0.91816 0.91630 0.91313 0.88217 0.87785 0.75799 0.86464 0.86607 0.86350 0.91956 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.15 0.37 -0.58 16 2 C -0.12 -0.87 5.89 -26.73 -0.16 -1.03 16 3 C -0.09 -0.69 5.50 -26.73 -0.15 -0.83 16 4 C -0.12 -1.12 5.25 -90.62 -0.48 -1.60 16 5 H 0.12 1.36 7.60 -51.93 -0.39 0.97 16 6 C -0.15 -1.29 9.88 -26.73 -0.26 -1.56 16 7 C -0.19 -2.01 5.91 -91.77 -0.54 -2.55 16 8 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 9 C 0.54 8.15 7.35 -10.98 -0.08 8.07 16 10 O -0.52 -9.75 13.96 5.55 0.08 -9.68 16 11 N -0.67 -10.31 5.34 -9.88 -0.05 -10.36 16 12 C 0.18 3.53 6.27 -83.72 -0.52 3.00 16 13 C -0.21 -4.04 8.66 -39.34 -0.34 -4.38 16 14 C -0.06 -1.21 10.03 -39.63 -0.40 -1.61 16 15 C -0.20 -4.36 9.99 -39.36 -0.39 -4.75 16 16 C 0.17 4.11 6.64 -39.14 -0.26 3.85 16 17 O -0.18 -5.02 9.76 0.05 0.00 -5.02 16 18 C -0.39 -10.90 9.44 30.89 0.29 -10.61 16 19 H 0.09 2.25 5.30 -52.49 -0.28 1.97 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.24 13.67 55.48 0.76 -24.48 16 22 Si 0.94 20.30 29.55 -169.99 -5.02 15.27 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 C -0.26 -5.62 9.04 -39.21 -0.35 -5.97 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.43 7.87 -51.93 -0.41 0.02 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 0.69 8.03 -51.93 -0.42 0.27 16 36 H 0.41 4.97 8.82 -40.82 -0.36 4.61 16 37 H 0.12 2.24 6.44 -52.49 -0.34 1.90 16 38 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 40 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.13 2.77 5.71 -52.49 -0.30 2.47 16 LS Contribution 348.19 15.07 5.25 5.25 Total: -1.00 -32.64 348.19 -8.23 -40.87 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.86 Total: 7.70 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -3.37 Total: -19.56 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.71 Total: -34.84 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.08 Total: -14.69 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.64 -8.23 -40.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079601770.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.809 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds