Wall clock time and date at job start Tue Mar 31 2020 06:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47468 * 2 1 4 4 C 1.52994 * 109.47100 * 120.00319 * 2 1 3 5 5 C 1.53004 * 109.47158 * 172.40875 * 4 2 1 6 6 H 1.09003 * 109.87340 * 306.41010 * 5 4 2 7 7 C 1.54327 * 109.87951 * 67.42035 * 5 4 2 8 8 C 1.55161 * 102.94193 * 141.61153 * 7 5 4 9 9 C 1.54911 * 101.58059 * 324.49730 * 8 7 5 10 10 N 1.47022 * 109.88448 * 185.38846 * 5 4 2 11 11 S 1.65594 * 125.64824 * 61.60942 * 10 5 4 12 12 O 1.42094 * 104.27768 * 201.23739 * 11 10 5 13 13 O 1.42107 * 104.27764 * 329.09969 * 11 10 5 14 14 C 1.81402 * 104.45076 * 85.16910 * 11 10 5 15 15 C 1.52990 * 109.47242 * 180.02562 * 14 11 10 16 16 C 1.50704 * 109.47374 * 179.97438 * 15 14 11 17 17 H 1.08000 * 119.99346 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00359 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99858 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00182 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47059 * 59.99814 * 20 18 16 22 22 H 1.48503 * 109.47340 * 180.02562 * 20 18 16 23 23 H 1.48509 * 109.46982 * 300.00392 * 20 18 16 24 24 H 1.09003 * 109.46823 * 299.99735 * 1 2 3 25 25 H 1.09002 * 109.47181 * 59.99334 * 1 2 3 26 26 H 1.08990 * 109.47275 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46823 * 240.00265 * 2 1 3 28 28 H 1.09003 * 109.46829 * 74.27325 * 3 2 1 29 29 H 1.08994 * 109.47498 * 194.27730 * 3 2 1 30 30 H 1.09003 * 109.47318 * 314.27949 * 3 2 1 31 31 H 1.08995 * 109.47545 * 292.40880 * 4 2 1 32 32 H 1.08994 * 109.47312 * 52.41226 * 4 2 1 33 33 H 1.09002 * 110.72188 * 259.97043 * 7 5 4 34 34 H 1.08999 * 110.72287 * 23.06978 * 7 5 4 35 35 H 1.09000 * 111.00013 * 82.57020 * 8 7 5 36 36 H 1.09000 * 111.00353 * 206.42374 * 8 7 5 37 37 H 1.09000 * 110.36553 * 155.84421 * 9 8 7 38 38 H 1.08995 * 110.36773 * 278.06072 * 9 8 7 39 39 H 1.09005 * 109.46785 * 300.00156 * 14 11 10 40 40 H 1.09003 * 109.47008 * 59.99776 * 14 11 10 41 41 H 1.09005 * 109.47252 * 299.99740 * 15 14 11 42 42 H 1.09003 * 109.47408 * 59.99892 * 15 14 11 43 43 H 0.97005 * 119.99675 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5581 -0.8884 1.1575 6 1 3.8213 -1.3745 0.2180 7 6 4.2442 0.4912 1.2448 8 6 5.5060 0.1984 2.0990 9 6 4.9716 -0.8674 3.0880 10 7 4.0419 -1.6925 2.2893 11 16 3.6134 -3.2589 2.6133 12 8 3.8993 -3.4217 3.9956 13 8 2.2843 -3.3674 2.1223 14 6 4.7470 -4.2556 1.6072 15 6 4.4476 -5.7406 1.8215 16 6 5.3889 -6.5687 0.9852 17 1 6.1266 -6.0841 0.3628 18 6 5.3083 -7.9447 1.0146 19 7 4.4096 -8.5347 1.7722 20 14 6.4746 -8.9711 -0.0225 21 1 7.8755 -8.6851 0.3784 22 1 6.1841 -10.4125 0.1855 23 1 6.2910 -8.6315 -1.4566 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8986 1.8778 0.9892 29 1 3.1001 1.4530 -0.2534 30 1 1.4848 2.0243 -0.7358 31 1 1.7918 -0.1352 2.1340 32 1 1.5701 -1.7022 1.3196 33 1 4.5239 0.8463 0.2530 34 1 3.5969 1.2130 1.7430 35 1 6.3088 -0.2075 1.4835 36 1 5.8355 1.0924 2.6284 37 1 5.7908 -1.4792 3.4655 38 1 4.4449 -0.3887 3.9135 39 1 4.6131 -4.0065 0.5545 40 1 5.7750 -4.0456 1.9024 41 1 4.5812 -5.9900 2.8742 42 1 3.4195 -5.9503 1.5260 43 1 4.3527 -9.5029 1.7926 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111335652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:16 Heat of formation + Delta-G solvation = -91.166323 kcal Electronic energy + Delta-G solvation = -22272.356272 eV Core-core repulsion = 19058.002473 eV Total energy + Delta-G solvation = -3214.353799 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.25015 -36.64805 -35.72984 -35.41017 -33.88146 -31.14845 -31.05442 -29.94654 -27.31965 -25.69876 -25.44830 -22.21361 -21.32463 -21.02700 -20.16639 -18.41419 -17.55932 -16.62886 -16.11774 -15.41658 -15.05448 -14.99760 -14.55929 -14.23014 -14.04383 -13.60728 -13.51735 -13.24931 -12.85873 -12.59687 -12.50641 -12.14337 -12.04248 -11.74397 -11.69877 -11.55856 -11.46307 -11.31264 -11.06539 -10.96753 -10.85571 -10.78635 -10.57201 -10.50746 -10.44952 -10.36691 -10.16676 -9.74862 -9.31531 -8.68491 -8.49791 -6.11982 -4.17679 0.76659 3.07312 3.27288 3.32024 3.33939 4.29170 4.35230 4.38194 4.49857 4.65210 4.81121 4.89430 4.99796 5.02430 5.22982 5.29078 5.35459 5.41296 5.55061 5.58971 5.63458 5.64277 5.68555 5.71476 5.73258 5.77148 5.79375 5.95711 5.98798 6.06711 6.10621 6.24181 6.29277 6.43673 6.50433 6.58714 6.62625 7.30090 7.36455 7.80699 8.18071 8.85362 9.46955 10.99043 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020468 B = 0.004269 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.644859 B = 6557.379124 C = 6865.963135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.160 4.160 4 C -0.152 4.152 5 C 0.153 3.847 6 H 0.072 0.928 7 C -0.126 4.126 8 C -0.136 4.136 9 C 0.124 3.876 10 N -1.016 6.016 11 S 2.605 3.395 12 O -0.964 6.964 13 O -0.958 6.958 14 C -0.590 4.590 15 C 0.028 3.972 16 C -0.521 4.521 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.032 0.968 42 H 0.033 0.967 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.104 20.909 -2.554 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.217 4.217 4 C -0.191 4.191 5 C 0.047 3.953 6 H 0.090 0.910 7 C -0.165 4.165 8 C -0.175 4.175 9 C -0.002 4.002 10 N -0.852 5.852 11 S 2.705 3.295 12 O -0.954 6.954 13 O -0.949 6.949 14 C -0.723 4.723 15 C -0.011 4.011 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.201 1.201 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.910 20.402 -1.846 20.574 hybrid contribution 1.145 -0.677 -0.974 1.649 sum -0.765 19.725 -2.820 19.940 Atomic orbital electron populations 1.21830 0.95264 1.02098 1.01202 1.21038 0.95814 0.95961 0.98404 1.22328 1.01802 0.96176 1.01383 1.22543 0.94904 1.03971 0.97634 1.21315 0.93817 0.91510 0.88688 0.91012 1.23079 0.96493 0.96446 1.00470 1.22859 0.97871 0.98723 0.98033 1.21936 0.91994 0.92607 0.93627 1.59018 1.59654 1.28928 1.37572 1.05308 0.76274 0.72339 0.75616 1.93531 1.86283 1.84738 1.30873 1.93474 1.34213 1.84920 1.82271 1.30493 1.14866 1.13144 1.13801 1.18957 0.98845 0.84307 0.98949 1.20964 1.17688 0.90923 1.26443 0.92133 1.25064 0.95750 0.98011 0.95614 1.69948 1.34053 1.10149 1.38716 0.86527 0.81065 0.79068 0.80591 1.20075 1.21040 1.20078 0.92935 0.93017 0.92289 0.91117 0.92744 0.91455 0.93360 0.91803 0.87640 0.90072 0.90100 0.90646 0.90326 0.90729 0.91664 0.86377 0.86386 0.94925 0.94841 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.14 37.16 0.34 -1.13 16 2 C -0.09 -0.95 2.89 -90.62 -0.26 -1.21 16 3 C -0.16 -1.29 7.72 37.16 0.29 -1.01 16 4 C -0.15 -1.91 4.31 -26.73 -0.12 -2.02 16 5 C 0.15 1.82 3.12 -66.95 -0.21 1.62 16 6 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 7 C -0.13 -1.10 4.46 -24.89 -0.11 -1.21 16 8 C -0.14 -1.17 7.09 -24.58 -0.17 -1.35 16 9 C 0.12 1.44 6.87 -2.35 -0.02 1.43 16 10 N -1.02 -14.38 3.34 -104.17 -0.35 -14.73 16 11 S 2.60 48.43 5.65 -107.50 -0.61 47.82 16 12 O -0.96 -20.66 17.55 -57.54 -1.01 -21.67 16 13 O -0.96 -19.71 14.93 -57.54 -0.86 -20.57 16 14 C -0.59 -11.63 6.11 37.15 0.23 -11.40 16 15 C 0.03 0.74 4.98 -27.89 -0.14 0.60 16 16 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 20 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 28 H 0.05 0.43 7.18 -51.93 -0.37 0.06 16 29 H 0.07 0.48 4.92 -51.93 -0.26 0.22 16 30 H 0.05 0.36 8.06 -51.93 -0.42 -0.06 16 31 H 0.06 0.78 7.90 -51.93 -0.41 0.37 16 32 H 0.11 1.66 5.32 -51.93 -0.28 1.38 16 33 H 0.08 0.58 6.54 -51.93 -0.34 0.24 16 34 H 0.08 0.65 6.08 -51.93 -0.32 0.34 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.12 2.11 8.14 -51.92 -0.42 1.68 16 40 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 41 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 344.75 15.07 5.20 5.20 Total: -1.00 -33.56 344.75 -9.92 -43.48 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.42 Total: -0.89 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: -0.58 Total: -29.00 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.39 Total: -40.65 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -1.87 Total: -42.24 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 48.43 SS G_CDS: -0.61 Total: 47.82 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.56 -9.92 -43.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111335652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.683 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds