Wall clock time and date at job start Tue Mar 31 2020 07:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47283 * 2 1 4 4 C 1.53006 * 109.47274 * 239.99980 * 2 1 3 5 5 C 1.50701 * 109.46933 * 60.00073 * 4 2 1 6 6 H 1.08005 * 120.00061 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00201 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99823 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00026 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47167 * 60.00396 * 9 7 5 11 11 H 1.48501 * 109.47137 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47428 * 300.00120 * 9 7 5 13 13 C 1.52998 * 109.47146 * 120.00448 * 2 1 3 14 14 N 1.46896 * 109.47024 * 300.00041 * 13 2 1 15 15 C 1.46899 * 111.00289 * 180.02562 * 14 13 2 16 16 H 1.09002 * 109.38467 * 34.99733 * 15 14 13 17 17 C 1.52585 * 109.29767 * 275.25957 * 15 14 13 18 18 C 1.52590 * 110.64205 * 169.90773 * 17 15 14 19 19 C 1.53035 * 109.98598 * 69.98816 * 18 17 15 20 20 S 1.81667 * 108.99662 * 296.35003 * 19 18 17 21 21 O 1.42096 * 108.66547 * 299.96807 * 20 19 18 22 22 O 1.42106 * 108.66362 * 168.62999 * 20 19 18 23 23 C 1.53036 * 109.38582 * 154.78849 * 15 14 13 24 24 H 1.08996 * 109.47089 * 300.00233 * 1 2 3 25 25 H 1.09003 * 109.47231 * 60.00123 * 1 2 3 26 26 H 1.09001 * 109.47375 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46888 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47373 * 299.99702 * 3 2 1 29 29 H 1.08999 * 109.46780 * 60.00078 * 3 2 1 30 30 H 1.08992 * 109.47489 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47299 * 300.00511 * 4 2 1 32 32 H 0.96994 * 119.99874 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47254 * 180.02562 * 13 2 1 34 34 H 1.09001 * 109.46987 * 59.99758 * 13 2 1 35 35 H 1.00898 * 111.00097 * 56.04390 * 14 13 2 36 36 H 1.09000 * 109.24507 * 290.20954 * 17 15 14 37 37 H 1.08998 * 109.24304 * 49.60979 * 17 15 14 38 38 H 1.08993 * 109.38508 * 309.82453 * 18 17 15 39 39 H 1.09008 * 109.38352 * 190.14418 * 18 17 15 40 40 H 1.09003 * 109.55047 * 176.49680 * 19 18 17 41 41 H 1.09000 * 109.63040 * 56.25349 * 19 18 17 42 42 H 1.09001 * 109.54738 * 303.55396 * 23 15 14 43 43 H 1.08996 * 109.55001 * 63.75144 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4815 -3.7320 8 7 2.6273 -1.5508 -3.8527 9 14 1.2491 0.3996 -5.2572 10 1 1.7442 1.7996 -5.2566 11 1 1.7440 -0.3005 -6.4697 12 1 -0.2358 0.3997 -5.2577 13 6 2.0400 -0.7213 1.2492 14 7 1.5503 -0.0289 2.4486 15 6 2.0218 -0.6947 3.6702 16 1 3.0238 -1.0899 3.5032 17 6 1.0764 -1.8413 4.0166 18 6 1.6646 -2.7066 5.1273 19 6 1.6595 -1.9356 6.4492 20 16 2.7470 -0.4886 6.2940 21 8 4.0618 -0.9377 5.9962 22 8 2.5374 0.3600 7.4144 23 6 2.0594 0.3169 4.8179 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1299 -0.7209 -1.2495 31 1 1.6766 -1.7489 -1.2494 32 1 2.8622 -1.8817 -4.7337 33 1 3.1300 -0.7210 1.2494 34 1 1.6766 -1.7490 1.2491 35 1 0.5438 0.0412 2.4401 36 1 0.1217 -1.4324 4.3472 37 1 0.9159 -2.4548 3.1301 38 1 2.6885 -2.9781 4.8706 39 1 1.0678 -3.6125 5.2345 40 1 2.0229 -2.5808 7.2491 41 1 0.6457 -1.6071 6.6777 42 1 2.6875 1.1627 4.5380 43 1 1.0490 0.6669 5.0289 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122489948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:10 Heat of formation + Delta-G solvation = -92.594738 kcal Electronic energy + Delta-G solvation = -21927.855173 eV Core-core repulsion = 18713.439433 eV Total energy + Delta-G solvation = -3214.415740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.82366 -37.25988 -36.60967 -36.22590 -33.78818 -32.29809 -30.19194 -27.85709 -26.93248 -26.39304 -25.25515 -23.17278 -22.24589 -21.12475 -19.08216 -18.00615 -17.09554 -16.59081 -16.25885 -15.93641 -15.37947 -15.26568 -14.91915 -14.34422 -14.12165 -13.83659 -13.44672 -13.28159 -12.88650 -12.74472 -12.45738 -12.34088 -12.22355 -12.03237 -11.74969 -11.73499 -11.66626 -11.24043 -11.02213 -10.98676 -10.90292 -10.81699 -10.54101 -10.51149 -10.29294 -10.17164 -9.74195 -9.06728 -8.88508 -8.34061 -8.27092 -5.98713 -3.99137 -0.21199 2.41942 3.32790 3.37819 3.39724 3.41968 3.63315 4.15385 4.23423 4.29605 4.42533 4.46813 4.55928 4.72802 4.96704 5.03022 5.18300 5.35572 5.37152 5.44656 5.56915 5.59837 5.63112 5.77242 5.82952 5.92458 6.17589 6.24975 6.43290 6.59524 6.71645 6.77798 7.09382 7.15246 7.20926 7.28727 7.51987 7.66465 7.81206 8.01060 8.44990 9.05932 9.63853 11.12885 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.038067 B = 0.003169 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.374169 B = 8834.562969 C = 8963.286518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.118 4.118 4 C 0.034 3.966 5 C -0.509 4.509 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.066 3.934 14 N -0.674 5.674 15 C 0.098 3.902 16 H 0.097 0.903 17 C -0.174 4.174 18 C -0.106 4.106 19 C -0.605 4.605 20 S 2.416 3.584 21 O -0.936 6.936 22 O -0.948 6.948 23 C -0.588 4.588 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.042 0.958 30 H 0.016 0.984 31 H 0.013 0.987 32 H 0.260 0.740 33 H 0.070 0.930 34 H 0.028 0.972 35 H 0.342 0.658 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.143 0.857 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 -0.992 19.771 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.059 4.059 3 C -0.175 4.175 4 C -0.003 4.003 5 C -0.547 4.547 6 H 0.076 0.924 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.063 4.063 14 N -0.305 5.305 15 C -0.014 4.014 16 H 0.115 0.885 17 C -0.213 4.213 18 C -0.145 4.145 19 C -0.734 4.734 20 S 2.598 3.402 21 O -0.933 6.933 22 O -0.945 6.945 23 C -0.718 4.718 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.162 0.838 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.161 0.839 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.030 -0.370 20.174 20.404 hybrid contribution -1.622 -0.631 -1.365 2.212 sum -4.652 -1.001 18.809 19.401 Atomic orbital electron populations 1.21777 0.96070 1.00365 1.00459 1.20643 0.94719 0.96192 0.94377 1.21615 0.99907 0.95754 1.00208 1.19119 0.96182 0.94939 0.90099 1.21190 1.30973 1.11944 0.90620 0.92365 1.25010 0.95368 0.95102 0.99057 1.69950 1.37127 1.23166 1.23452 0.86722 0.79110 0.79856 0.82683 1.20294 1.21432 1.20380 1.22235 1.00072 0.94947 0.89008 1.60624 1.16701 1.52794 1.00398 1.21220 1.00273 0.89846 0.90065 0.88459 1.22537 1.00256 0.98331 1.00140 1.21203 1.03842 0.99160 0.90287 1.30249 1.17023 1.19592 1.06531 1.08045 0.77093 0.77780 0.77241 1.93599 1.33371 1.81293 1.85083 1.93593 1.86917 1.65224 1.48718 1.30358 1.13955 1.11781 1.15750 0.94859 0.91652 0.94069 0.94063 0.92634 0.93911 0.96610 0.96907 0.93072 0.91146 0.95367 0.83768 0.90576 0.89359 0.89569 0.89586 0.85010 0.85043 0.83896 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 7.89 37.16 0.29 -1.94 16 2 C -0.06 -1.10 0.60 -154.51 -0.09 -1.20 16 3 C -0.12 -2.18 8.06 37.16 0.30 -1.88 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.61 7.65 -34.44 -0.26 -13.87 16 6 H 0.06 1.51 5.68 -52.48 -0.30 1.21 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.44 13.29 55.43 0.74 -25.71 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.07 1.03 4.43 -3.83 -0.02 1.01 16 14 N -0.67 -8.30 5.45 -106.93 -0.58 -8.88 16 15 C 0.10 0.96 2.30 -67.91 -0.16 0.80 16 16 H 0.10 1.03 7.67 -51.93 -0.40 0.63 16 17 C -0.17 -1.32 4.91 -27.15 -0.13 -1.46 16 18 C -0.11 -0.69 5.73 -26.92 -0.15 -0.84 16 19 C -0.60 -3.47 6.35 37.18 0.24 -3.23 16 20 S 2.42 20.99 5.31 -107.50 -0.57 20.42 16 21 O -0.94 -11.66 17.94 -57.81 -1.04 -12.70 16 22 O -0.95 -11.39 18.10 -57.81 -1.05 -12.44 16 23 C -0.59 -4.78 5.95 37.18 0.22 -4.56 16 24 H 0.03 0.47 6.57 -51.93 -0.34 0.13 16 25 H 0.06 1.25 6.62 -51.93 -0.34 0.91 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16 29 H 0.04 0.70 7.60 -51.93 -0.39 0.31 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 34 H 0.03 0.43 7.27 -51.93 -0.38 0.05 16 35 H 0.34 3.88 6.52 -39.29 -0.26 3.63 16 36 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.09 0.76 7.22 -51.93 -0.37 0.38 16 38 H 0.09 0.60 8.01 -51.93 -0.42 0.19 16 39 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.14 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.13 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 341.82 15.07 5.15 5.15 Total: -1.00 -34.09 341.82 -9.67 -43.76 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.32 Total: -0.87 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 0.02 Total: -25.01 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.15 Total: -34.59 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -2.08 Total: -25.13 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 20.99 SS G_CDS: -0.57 Total: 20.42 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.09 -9.67 -43.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122489948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.832 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds