Wall clock time and date at job start Tue Mar 31 2020 07:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.50453 * 305.06416 * 4 3 2 6 6 C 1.53043 * 109.49687 * 65.16610 * 4 3 2 7 7 C 1.53043 * 109.53495 * 181.31330 * 6 4 3 8 8 C 1.53188 * 109.31463 * 298.63058 * 7 6 4 9 9 N 1.46926 * 108.77618 * 54.63562 * 8 7 6 10 10 S 1.65600 * 120.63070 * 126.36841 * 9 8 7 11 11 O 1.42102 * 104.27520 * 26.09947 * 10 9 8 12 12 O 1.42097 * 104.27673 * 153.95406 * 10 9 8 13 13 C 1.81401 * 104.45160 * 270.02613 * 10 9 8 14 14 C 1.53001 * 109.47238 * 179.97438 * 13 10 9 15 15 C 1.50699 * 109.47142 * 179.97438 * 14 13 10 16 16 H 1.08004 * 119.99873 * 0.02562 * 15 14 13 17 17 C 1.37870 * 119.99811 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00404 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00004 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46947 * 59.99798 * 19 17 15 21 21 H 1.48494 * 109.47362 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46947 * 300.00223 * 19 17 15 23 23 C 1.46931 * 118.74012 * 306.39694 * 9 8 7 24 24 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 25 25 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 26 26 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 28 28 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 29 29 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 30 30 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 31 31 H 1.09003 * 109.45569 * 301.32981 * 6 4 3 32 32 H 1.08994 * 109.46241 * 61.28948 * 6 4 3 33 33 H 1.09005 * 109.49517 * 178.67647 * 7 6 4 34 34 H 1.09004 * 109.52734 * 58.60175 * 7 6 4 35 35 H 1.09000 * 109.58910 * 294.85407 * 8 7 6 36 36 H 1.09002 * 109.70420 * 174.49690 * 8 7 6 37 37 H 1.09001 * 109.46826 * 299.99863 * 13 10 9 38 38 H 1.08999 * 109.46935 * 59.99450 * 13 10 9 39 39 H 1.08994 * 109.47017 * 300.00090 * 14 13 10 40 40 H 1.09001 * 109.46898 * 59.99614 * 14 13 10 41 41 H 0.97003 * 120.00231 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.57940 * 293.81562 * 23 9 8 43 43 H 1.09001 * 109.70280 * 173.46440 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9334 0.8525 0.8418 6 6 4.0812 0.8365 -1.3083 7 6 5.6113 0.8060 -1.2948 8 6 6.1456 2.2374 -1.1837 9 7 5.5444 2.8764 -0.0051 10 16 6.4981 3.5773 1.1532 11 8 7.6848 3.9371 0.4593 12 8 5.6649 4.5666 1.7415 13 6 6.8314 2.2414 2.3343 14 6 7.7152 2.7699 3.4659 15 6 7.9915 1.6602 4.4474 16 1 7.5785 0.6763 4.2805 17 6 8.7725 1.9008 5.5578 18 7 9.2758 3.0987 5.7608 19 14 9.1157 0.5252 6.7742 20 1 9.8125 -0.5872 6.0796 21 1 9.9744 1.0378 7.8719 22 1 7.8335 0.0311 7.3375 23 6 4.0810 2.8812 0.1265 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9564 -0.8900 30 1 1.6764 1.9564 0.8900 31 1 3.6987 -0.1789 -1.4121 32 1 3.7374 1.4414 -2.1473 33 1 5.9743 0.3527 -2.2173 34 1 5.9566 0.2215 -0.4420 35 1 5.8781 2.7979 -2.0794 36 1 7.2300 2.2175 -1.0753 37 1 5.8902 1.8783 2.7471 38 1 7.3435 1.4253 1.8246 39 1 8.6562 3.1327 3.0527 40 1 7.2034 3.5862 3.9755 41 1 9.8250 3.2680 6.5423 42 1 3.6453 3.4943 -0.6625 43 1 3.8009 3.2848 1.0995 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127371868.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:15 Heat of formation + Delta-G solvation = -109.271934 kcal Electronic energy + Delta-G solvation = -22026.171744 eV Core-core repulsion = 18811.032827 eV Total energy + Delta-G solvation = -3215.138917 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.00387 -36.64801 -35.48913 -35.28381 -33.87776 -32.10794 -31.31656 -31.14176 -26.50705 -25.61173 -24.66310 -22.53314 -21.79174 -21.15402 -19.97899 -18.45831 -17.54117 -16.50045 -15.93783 -15.49250 -15.39869 -14.74618 -14.55556 -14.51363 -14.40739 -13.87872 -13.59790 -13.35106 -13.08052 -12.89161 -12.51803 -12.19959 -11.90187 -11.74859 -11.61828 -11.56196 -11.47743 -11.26288 -11.15981 -11.06250 -10.96426 -10.87191 -10.83577 -10.49729 -10.40888 -10.36366 -10.29786 -9.72100 -9.28506 -8.70935 -8.49544 -6.11630 -4.17324 0.78710 3.04542 3.27319 3.32156 3.33957 4.30704 4.39417 4.46931 4.50727 4.66959 4.74872 4.87684 4.90021 5.01128 5.15847 5.18573 5.23381 5.30624 5.44762 5.47086 5.56643 5.62212 5.63406 5.68996 5.71751 5.75530 5.78565 5.85167 5.90751 5.95395 6.00048 6.10070 6.15586 6.30299 6.32719 6.51271 6.72462 7.30891 7.37192 7.81019 8.18511 8.85798 9.47336 10.99388 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015586 B = 0.004517 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.074547 B = 6197.583587 C = 7153.624011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.107 4.107 5 H 0.078 0.922 6 C -0.110 4.110 7 C -0.138 4.138 8 C 0.122 3.878 9 N -1.006 6.006 10 S 2.590 3.410 11 O -0.965 6.965 12 O -0.965 6.965 13 C -0.589 4.589 14 C 0.028 3.972 15 C -0.520 4.520 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.127 3.873 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.266 0.734 42 H 0.067 0.933 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.015 -6.082 -15.014 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.127 4.127 5 H 0.096 0.904 6 C -0.148 4.148 7 C -0.177 4.177 8 C -0.004 4.004 9 N -0.842 5.842 10 S 2.689 3.311 11 O -0.956 6.956 12 O -0.955 6.955 13 C -0.722 4.722 14 C -0.011 4.011 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.144 4.144 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C 0.002 3.998 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.624 -5.015 -14.940 20.832 hybrid contribution 0.129 -1.425 0.894 1.687 sum -13.495 -6.439 -14.046 20.515 Atomic orbital electron populations 1.21779 0.96095 1.01411 1.01744 1.21570 0.95577 0.96970 1.02189 1.21612 0.94331 0.96990 1.02353 1.21616 0.95176 0.96913 0.99001 0.90356 1.21551 0.95200 1.00849 0.97173 1.21962 0.96220 0.96977 1.02542 1.21350 0.98268 0.92670 0.88072 1.57962 1.15691 1.74800 1.35712 1.05713 0.73435 0.77147 0.74816 1.93529 1.48004 1.82207 1.71818 1.93529 1.67458 1.56234 1.78319 1.30495 1.10298 1.16886 1.14532 1.18955 0.93619 0.97793 0.90704 1.20962 1.32026 0.96183 1.06796 0.92138 1.25061 0.95538 0.95854 0.97980 1.69944 1.33671 1.20687 1.28582 0.86535 0.78352 0.81884 0.80526 1.20091 1.21055 1.20085 1.21396 0.79186 0.96161 1.03104 0.92725 0.92906 0.92982 0.91860 0.91919 0.91834 0.91538 0.91686 0.91986 0.90972 0.91217 0.91556 0.89146 0.86376 0.86371 0.94913 0.94914 0.92472 0.91510 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.13 -0.97 5.69 -26.73 -0.15 -1.12 16 3 C -0.11 -0.95 4.69 -26.73 -0.13 -1.08 16 4 C -0.11 -1.04 2.34 -90.50 -0.21 -1.25 16 5 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.11 -0.95 4.96 -26.69 -0.13 -1.08 16 7 C -0.14 -1.31 6.08 -26.61 -0.16 -1.47 16 8 C 0.12 1.43 6.32 -3.71 -0.02 1.40 16 9 N -1.01 -13.97 3.22 -113.52 -0.37 -14.34 16 10 S 2.59 47.85 5.41 -107.50 -0.58 47.26 16 11 O -0.97 -20.37 16.72 -57.54 -0.96 -21.33 16 12 O -0.96 -20.36 16.73 -57.54 -0.96 -21.33 16 13 C -0.59 -11.45 6.12 37.16 0.23 -11.22 16 14 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 15 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 16 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 19 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.13 1.51 5.59 -3.71 -0.02 1.49 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.46 6.54 -51.93 -0.34 0.12 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.50 6.51 -51.93 -0.34 0.17 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.12 7.09 -51.93 -0.37 0.75 16 37 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 38 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 39 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.14 7.10 -51.93 -0.37 0.77 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -33.65 351.04 -10.37 -44.02 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -7.72 Total: -2.26 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: -0.78 Total: -27.66 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.37 Total: -40.24 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -1.92 Total: -42.66 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 47.85 SS G_CDS: -0.58 Total: 47.26 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.65 -10.37 -44.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127371868.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.249 kcal (2) G-P(sol) polarization free energy of solvation -33.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds