Wall clock time and date at job start Tue Mar 31 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47042 * 2 1 4 4 C 1.53000 * 109.46906 * 178.15645 * 3 2 1 5 5 C 1.52998 * 115.55110 * 294.48311 * 4 3 2 6 6 N 1.46506 * 109.46741 * 279.76689 * 5 4 3 7 7 S 1.65603 * 119.99647 * 165.33860 * 6 5 4 8 8 O 1.42097 * 104.27676 * 308.93002 * 7 6 5 9 9 O 1.42101 * 104.27524 * 181.07400 * 7 6 5 10 10 C 1.81405 * 104.44791 * 65.00022 * 7 6 5 11 11 C 1.53002 * 109.46865 * 179.97438 * 10 7 6 12 12 C 1.52996 * 109.46797 * 179.97438 * 11 10 7 13 13 C 1.50702 * 109.47143 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99777 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00163 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99605 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 119.99935 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.46931 * 90.00321 * 17 15 13 19 19 H 1.48505 * 109.47246 * 210.00106 * 17 15 13 20 20 H 1.48494 * 109.47483 * 330.00040 * 17 15 13 21 21 C 1.53006 * 117.51623 * 80.18261 * 4 3 2 22 22 C 1.53000 * 117.49902 * 148.81130 * 4 3 2 23 23 H 1.08998 * 109.46942 * 299.99661 * 1 2 3 24 24 H 1.08998 * 109.47295 * 59.99712 * 1 2 3 25 25 H 1.09000 * 109.47148 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47081 * 240.00526 * 2 1 3 27 27 H 1.08998 * 109.47295 * 120.00288 * 2 1 3 28 28 H 1.08998 * 109.47049 * 58.15890 * 3 2 1 29 29 H 1.09004 * 109.47178 * 298.15592 * 3 2 1 30 30 H 1.08996 * 109.47125 * 159.76979 * 5 4 3 31 31 H 1.08998 * 109.47541 * 39.76430 * 5 4 3 32 32 H 0.96999 * 120.00357 * 345.34438 * 6 5 4 33 33 H 1.08993 * 109.47073 * 299.99771 * 10 7 6 34 34 H 1.09003 * 109.46645 * 59.99861 * 10 7 6 35 35 H 1.08993 * 109.47573 * 300.00059 * 11 10 7 36 36 H 1.08999 * 109.46780 * 60.00367 * 11 10 7 37 37 H 1.09003 * 109.47692 * 300.00397 * 12 11 10 38 38 H 1.08999 * 109.47091 * 60.00637 * 12 11 10 39 39 H 0.96999 * 119.99348 * 179.97438 * 16 15 13 40 40 H 1.09002 * 117.49405 * 214.97028 * 21 4 3 41 41 H 1.08993 * 117.49861 * 359.97438 * 21 4 3 42 42 H 1.09004 * 117.49652 * 359.97341 * 22 4 3 43 43 H 1.09001 * 117.50184 * 144.99755 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5693 1.4428 0.0464 5 6 4.1907 0.8843 1.3281 6 7 4.1580 1.9100 2.3737 7 16 4.4221 1.4904 3.9538 8 8 3.5299 0.4083 4.1827 9 8 4.2904 2.7120 4.6675 10 6 6.1422 0.9152 3.9879 11 6 6.5110 0.4944 5.4119 12 6 7.9616 0.0088 5.4406 13 6 8.3248 -0.4063 6.8431 14 1 7.5939 -0.3315 7.6347 15 6 9.5901 -0.8814 7.1156 16 7 9.9067 -1.2441 8.3395 17 14 10.8544 -1.0100 5.7466 18 1 11.6198 0.2596 5.6588 19 1 11.7853 -2.1302 6.0361 20 1 10.1633 -1.2616 4.4565 21 6 4.3164 1.1972 -1.2661 22 6 4.2970 2.5963 -0.6471 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6500 1.9658 0.8730 29 1 1.7039 1.9468 -0.9061 30 1 5.2237 0.5952 1.1350 31 1 3.6247 0.0126 1.6565 32 1 3.9816 2.8349 2.1405 33 1 6.2540 0.0638 3.3166 34 1 6.8012 1.7213 3.6653 35 1 6.3993 1.3461 6.0829 36 1 5.8520 -0.3115 5.7348 37 1 8.0730 -0.8430 4.7696 38 1 8.6209 0.8144 5.1176 39 1 10.7968 -1.5787 8.5311 40 1 5.2506 0.6378 -1.2163 41 1 3.7184 1.0350 -2.1628 42 1 3.6861 3.3548 -1.1367 43 1 5.2184 2.9573 -0.1902 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131377972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:38 Heat of formation + Delta-G solvation = -81.271510 kcal Electronic energy + Delta-G solvation = -21251.452474 eV Core-core repulsion = 18037.527747 eV Total energy + Delta-G solvation = -3213.924728 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.22072 -36.92626 -35.79815 -34.81739 -34.45617 -33.94931 -32.21992 -28.38635 -27.89966 -26.18021 -23.62705 -22.97371 -21.82962 -20.52610 -19.54299 -19.18959 -17.46987 -16.92153 -16.57367 -16.01175 -15.67539 -15.55890 -14.98402 -14.47132 -14.20441 -14.11352 -13.72337 -13.27751 -13.09714 -12.88860 -12.37352 -12.29503 -12.14802 -12.09456 -11.92236 -11.85304 -11.81046 -11.60142 -11.56878 -11.21343 -10.99630 -10.95870 -10.90183 -10.45024 -10.10102 -10.09462 -9.91437 -9.80889 -9.37578 -9.25233 -8.59451 -6.09103 -4.08365 0.40186 2.75736 3.25833 3.33375 3.35288 3.43647 3.89740 4.21204 4.29880 4.39587 4.42655 4.47831 4.60010 4.87463 4.94442 4.98137 5.07978 5.11021 5.15690 5.24719 5.30363 5.33313 5.48751 5.55543 5.60003 5.63699 5.69715 5.75464 5.78200 5.81054 5.92356 6.03798 6.09990 6.13682 6.25859 6.66247 6.88180 7.11769 7.25796 7.70398 8.47082 8.95469 9.52005 11.04259 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021993 B = 0.003435 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.854805 B = 8148.565317 C = 8598.640891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.081 4.081 4 C -0.133 4.133 5 C 0.149 3.851 6 N -1.121 6.121 7 S 2.603 3.397 8 O -0.959 6.959 9 O -0.962 6.962 10 C -0.616 4.616 11 C -0.098 4.098 12 C -0.004 4.004 13 C -0.527 4.527 14 H 0.075 0.925 15 C 0.067 3.933 16 N -0.900 5.900 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.165 4.165 22 C -0.172 4.172 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.415 0.585 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.020 0.980 38 H 0.015 0.985 39 H 0.264 0.736 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.139 5.925 -22.288 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.119 4.119 4 C -0.134 4.134 5 C 0.023 3.977 6 N -0.880 5.880 7 S 2.698 3.302 8 O -0.949 6.949 9 O -0.952 6.952 10 C -0.748 4.748 11 C -0.137 4.137 12 C -0.043 4.043 13 C -0.565 4.565 14 H 0.093 0.907 15 C -0.134 4.134 16 N -0.539 5.539 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.203 4.203 22 C -0.209 4.209 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.249 0.751 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.038 0.962 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.628 5.715 -21.434 26.572 hybrid contribution 1.419 0.183 -1.133 1.825 sum -13.209 5.898 -22.567 26.805 Atomic orbital electron populations 1.21771 0.95901 1.01710 1.01649 1.21542 0.95723 0.96597 1.02511 1.21139 0.91147 0.97391 1.02193 1.21624 0.94837 1.04056 0.92913 1.20842 1.00143 0.90566 0.86149 1.55688 1.89112 1.17588 1.25573 1.05207 0.77971 0.74565 0.72422 1.93573 1.60850 1.56917 1.83583 1.93587 1.86699 1.44593 1.70317 1.30607 1.23312 1.12197 1.08656 1.21310 1.01952 1.01585 0.88864 1.19528 0.90414 0.96023 0.98330 1.21141 0.98847 1.43109 0.93419 0.90717 1.25030 0.98286 0.94703 0.95413 1.69915 1.20844 1.43867 1.19266 0.86770 0.81492 0.77951 0.82999 1.20230 1.21259 1.19073 1.23050 1.02071 0.99396 0.95744 1.23051 1.02555 0.91680 1.03631 0.92623 0.93041 0.92687 0.91953 0.91293 0.91167 0.91828 0.91648 0.89474 0.75087 0.85573 0.85321 0.90986 0.90946 0.96197 0.96635 0.92618 0.88437 0.88537 0.88627 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.13 -0.97 5.82 -26.73 -0.16 -1.13 16 3 C -0.08 -0.61 5.10 -26.73 -0.14 -0.74 16 4 C -0.13 -0.99 1.58 -154.51 -0.24 -1.23 16 5 C 0.15 1.32 5.99 -4.04 -0.02 1.30 16 6 N -1.12 -11.23 5.86 -10.61 -0.06 -11.30 16 7 S 2.60 36.32 5.46 -107.50 -0.59 35.73 16 8 O -0.96 -16.24 17.50 -57.54 -1.01 -17.24 16 9 O -0.96 -16.43 18.08 -57.54 -1.04 -17.47 16 10 C -0.62 -8.74 6.07 37.16 0.23 -8.51 16 11 C -0.10 -1.90 5.16 -26.73 -0.14 -2.04 16 12 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 13 C -0.53 -15.02 9.66 -34.44 -0.33 -15.36 16 14 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 17 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 21 C -0.16 -1.05 9.90 -26.73 -0.26 -1.31 16 22 C -0.17 -1.13 9.72 -26.73 -0.26 -1.38 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.07 0.61 6.70 -51.93 -0.35 0.26 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.07 0.49 7.95 -51.93 -0.41 0.08 16 31 H 0.09 0.83 6.15 -51.93 -0.32 0.52 16 32 H 0.42 3.55 8.44 -34.47 -0.29 3.26 16 33 H 0.13 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.13 1.58 8.14 -51.92 -0.42 1.15 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 38 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.10 0.59 8.08 -51.93 -0.42 0.17 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 361.68 15.07 5.45 5.45 Total: -1.00 -34.93 361.68 -9.95 -44.87 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.64 Total: -0.30 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: -1.17 Total: -29.50 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.71 Total: -38.27 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -2.05 Total: -34.72 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Atomic # 16 Polarization: 36.32 SS G_CDS: -0.59 Total: 35.73 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.93 -9.95 -44.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131377972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.398 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds