Wall clock time and date at job start Tue Mar 31 2020 06:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53005 * 109.47213 * 2 1 4 4 C 1.53004 * 109.47312 * 119.99375 * 2 1 3 5 5 C 1.50701 * 109.47211 * 300.00664 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 C 1.52997 * 109.47546 * 239.99601 * 2 1 3 14 14 N 1.46904 * 109.46983 * 59.99805 * 13 2 1 15 15 C 1.46895 * 111.00014 * 180.02562 * 14 13 2 16 16 C 1.53010 * 109.47023 * 180.02562 * 15 14 13 17 17 H 1.09006 * 110.00879 * 53.61990 * 16 15 14 18 18 C 1.53873 * 110.02646 * 292.19381 * 16 15 14 19 19 C 1.54169 * 108.70484 * 193.52835 * 18 16 15 20 20 S 1.82924 * 105.08400 * 27.90692 * 19 18 16 21 21 O 1.42101 * 109.35189 * 244.47732 * 20 19 18 22 22 O 1.42101 * 109.35104 * 111.27609 * 20 19 18 23 23 C 1.55043 * 110.02514 * 175.00179 * 16 15 14 24 24 H 1.09005 * 109.47428 * 300.00019 * 1 2 3 25 25 H 1.09004 * 109.47351 * 60.00373 * 1 2 3 26 26 H 1.09006 * 109.47240 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47438 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46658 * 300.00052 * 3 2 1 29 29 H 1.08996 * 109.47069 * 59.99431 * 3 2 1 30 30 H 1.09000 * 109.47211 * 179.97438 * 4 2 1 31 31 H 1.09007 * 109.46376 * 60.00233 * 4 2 1 32 32 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.47672 * 179.97438 * 13 2 1 34 34 H 1.08998 * 109.47443 * 300.00194 * 13 2 1 35 35 H 1.00907 * 110.99961 * 56.04596 * 14 13 2 36 36 H 1.08999 * 109.47406 * 299.99931 * 15 14 13 37 37 H 1.09000 * 109.47182 * 60.00676 * 15 14 13 38 38 H 1.09006 * 109.64759 * 313.37822 * 18 16 15 39 39 H 1.09000 * 109.64886 * 73.67780 * 18 16 15 40 40 H 1.08992 * 110.31813 * 269.00610 * 19 18 16 41 41 H 1.08995 * 110.40408 * 146.85347 * 19 18 16 42 42 H 1.09005 * 110.78832 * 279.99174 * 23 16 15 43 43 H 1.08999 * 110.79514 * 43.45636 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5375 -0.0107 2.4798 6 1 0.9169 0.8676 2.3806 7 6 1.8754 -0.4783 3.7320 8 7 2.6314 -1.5476 3.8528 9 14 1.2590 0.4068 5.2571 10 1 0.4334 1.5730 4.8529 11 1 0.4367 -0.5239 6.0713 12 1 2.4173 0.8753 6.0597 13 6 2.0400 -0.7213 -1.2491 14 7 1.5503 -0.0289 -2.4487 15 6 2.0209 -0.6954 -3.6702 16 6 1.4923 0.0532 -4.8955 17 1 1.7565 1.1087 -4.8304 18 6 -0.0354 -0.1039 -4.9905 19 6 -0.4938 0.3564 -6.3886 20 16 0.9404 0.0546 -7.4831 21 8 1.4210 1.2952 -7.9824 22 8 0.6323 -1.0013 -8.3828 23 6 2.0829 -0.5632 -6.1898 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 3.1300 -0.7215 1.2491 31 1 1.6766 -1.7488 1.2493 32 1 2.8694 -1.8764 4.7337 33 1 3.1299 -0.7209 -1.2494 34 1 1.6767 -1.7490 -1.2492 35 1 1.8197 0.9435 -2.4402 36 1 3.1108 -0.6955 -3.6872 37 1 1.6570 -1.7227 -3.6868 38 1 -0.3064 -1.1492 -4.8417 39 1 -0.5150 0.5091 -4.2274 40 1 -0.7429 1.4174 -6.3750 41 1 -1.3519 -0.2290 -6.7190 42 1 3.0962 -0.2008 -6.3635 43 1 2.0628 -1.6521 -6.1440 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135138992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:54 Heat of formation + Delta-G solvation = -94.147785 kcal Electronic energy + Delta-G solvation = -21398.016607 eV Core-core repulsion = 18183.533522 eV Total energy + Delta-G solvation = -3214.483085 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.39987 -37.32942 -36.95318 -36.27350 -33.80709 -32.15754 -30.48484 -27.42161 -26.67438 -26.38588 -24.81099 -23.70994 -22.15806 -20.90405 -19.12886 -17.95036 -17.14514 -16.78099 -16.28344 -15.98091 -15.40421 -15.06933 -14.62769 -14.60098 -14.38561 -13.95479 -13.48452 -13.11067 -12.77966 -12.59557 -12.45202 -12.31344 -12.22700 -12.13791 -12.03908 -11.88746 -11.60914 -11.13671 -11.05078 -10.93719 -10.86203 -10.79221 -10.57163 -10.54690 -10.30834 -10.14291 -9.74302 -9.07494 -8.86932 -8.35730 -8.23112 -6.00029 -4.00296 -0.25696 2.21282 3.27042 3.29648 3.37831 3.40870 3.65366 3.96154 4.18296 4.30357 4.44946 4.47998 4.59353 4.67171 4.94705 5.12127 5.22589 5.36012 5.38401 5.46736 5.54730 5.64102 5.72615 5.82601 5.84332 5.92188 6.17671 6.25833 6.43740 6.58897 6.71979 6.77163 7.11171 7.15275 7.20319 7.29885 7.54211 7.66078 7.80333 8.00127 8.44162 9.05386 9.62920 11.11665 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.048591 B = 0.002677 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.096751 B =10457.001056 C =10586.464521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.507 4.507 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.070 3.930 14 N -0.688 5.688 15 C 0.070 3.930 16 C -0.086 4.086 17 H 0.094 0.906 18 C -0.102 4.102 19 C -0.591 4.591 20 S 2.384 3.616 21 O -0.941 6.941 22 O -0.944 6.944 23 C -0.584 4.584 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.258 0.742 33 H 0.024 0.976 34 H 0.067 0.933 35 H 0.339 0.661 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 2.856 -19.884 20.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.187 4.187 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.059 4.059 14 N -0.320 5.320 15 C -0.060 4.060 16 C -0.106 4.106 17 H 0.112 0.888 18 C -0.140 4.140 19 C -0.721 4.721 20 S 2.569 3.431 21 O -0.939 6.939 22 O -0.941 6.941 23 C -0.715 4.715 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.158 0.842 36 H 0.053 0.947 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.122 0.878 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.732 2.550 -20.764 21.250 hybrid contribution 0.655 0.470 1.814 1.985 sum -3.078 3.019 -18.950 19.434 Atomic orbital electron populations 1.21597 0.94965 1.00560 1.00174 1.20635 0.95882 0.95011 0.94397 1.21774 0.99708 0.96730 1.00448 1.19128 0.95882 0.95200 0.90202 1.21267 1.30662 1.11990 0.90590 0.92232 1.25018 0.95382 0.95124 0.99097 1.69970 1.37261 1.23279 1.23227 0.86609 0.78585 0.79761 0.83481 1.19770 1.21141 1.21192 1.22118 0.96438 0.98146 0.89165 1.60586 1.63714 1.06508 1.01157 1.21876 0.97251 0.98438 0.88457 1.21876 0.94512 1.01076 0.93151 0.88788 1.21908 0.94048 1.04174 0.93896 1.30504 1.18257 1.11460 1.11886 1.09146 0.79972 0.75843 0.78136 1.93619 1.79201 1.42992 1.78044 1.93609 1.83377 1.56411 1.60722 1.30698 1.14828 1.12007 1.13925 0.92692 0.93908 0.94186 0.94108 0.94808 0.91682 0.96947 0.96703 0.93192 0.95741 0.91467 0.84161 0.94738 0.90457 0.89617 0.87802 0.84653 0.84526 0.84502 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 8.06 37.15 0.30 -1.78 16 2 C -0.06 -1.09 0.60 -154.51 -0.09 -1.19 16 3 C -0.13 -2.24 7.89 37.16 0.29 -1.95 16 4 C 0.03 0.81 4.04 -27.88 -0.11 0.70 16 5 C -0.51 -13.50 7.65 -34.44 -0.26 -13.76 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 8 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 13 C 0.07 1.08 4.65 -3.82 -0.02 1.07 16 14 N -0.69 -8.16 5.53 -113.78 -0.63 -8.79 16 15 C 0.07 0.65 5.10 -3.82 -0.02 0.64 16 16 C -0.09 -0.60 2.75 -89.08 -0.25 -0.85 16 17 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 18 C -0.10 -0.67 5.58 -25.67 -0.14 -0.81 16 19 C -0.59 -3.28 7.26 37.77 0.27 -3.01 16 20 S 2.38 17.98 6.11 -107.50 -0.66 17.32 16 21 O -0.94 -10.56 18.15 -57.71 -1.05 -11.61 16 22 O -0.94 -10.55 18.15 -57.71 -1.05 -11.60 16 23 C -0.58 -3.44 6.67 38.24 0.26 -3.18 16 24 H 0.05 1.08 6.62 -51.93 -0.34 0.74 16 25 H 0.04 0.67 7.60 -51.93 -0.39 0.27 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.03 0.48 6.57 -51.93 -0.34 0.14 16 29 H 0.06 1.25 6.62 -51.93 -0.34 0.91 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.34 3.84 6.77 -39.29 -0.27 3.58 16 36 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 38 H 0.09 0.54 8.05 -51.93 -0.42 0.12 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.14 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 347.88 15.07 5.24 5.24 Total: -1.00 -34.13 347.88 -9.75 -43.88 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -7.45 Total: -2.24 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 0.13 Total: -22.72 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.11 Total: -34.47 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -2.09 Total: -23.21 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 17.98 SS G_CDS: -0.66 Total: 17.32 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.13 -9.75 -43.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135138992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.273 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds