Wall clock time and date at job start Tue Mar 31 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46878 * 2 1 4 4 C 1.52999 * 109.46980 * 120.00185 * 2 1 3 5 5 C 1.53035 * 109.45993 * 60.00111 * 4 2 1 6 6 C 1.53198 * 109.31238 * 181.37398 * 5 4 2 7 7 N 1.46923 * 108.77204 * 305.36264 * 6 5 4 8 8 S 1.65597 * 120.63209 * 233.58653 * 7 6 5 9 9 O 1.42104 * 104.27664 * 333.92844 * 8 7 6 10 10 O 1.42108 * 104.27669 * 206.07716 * 8 7 6 11 11 C 1.81391 * 104.45133 * 90.00299 * 8 7 6 12 12 C 1.53006 * 109.47235 * 180.02562 * 11 8 7 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 8 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99710 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99770 * 17 15 13 20 20 H 1.48508 * 109.47394 * 329.99535 * 17 15 13 21 21 C 1.46925 * 118.73950 * 53.86321 * 7 6 5 22 22 C 1.53036 * 109.44830 * 180.02562 * 4 2 1 23 23 H 1.09002 * 109.46911 * 60.00281 * 1 2 3 24 24 H 1.09004 * 109.47248 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47423 * 300.00010 * 1 2 3 26 26 H 1.09004 * 109.47055 * 240.00244 * 2 1 3 27 27 H 1.09000 * 109.46596 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47033 * 299.99981 * 3 2 1 29 29 H 1.08999 * 109.46751 * 59.99889 * 3 2 1 30 30 H 1.09001 * 109.45958 * 300.02636 * 4 2 1 31 31 H 1.08999 * 109.50114 * 61.42235 * 5 4 2 32 32 H 1.09004 * 109.52595 * 301.33622 * 5 4 2 33 33 H 1.09005 * 109.58372 * 185.58170 * 6 5 4 34 34 H 1.08997 * 109.70272 * 65.21909 * 6 5 4 35 35 H 1.09001 * 109.47423 * 60.00430 * 11 8 7 36 36 H 1.09001 * 109.47260 * 300.00293 * 11 8 7 37 37 H 1.09001 * 109.47002 * 299.99604 * 12 11 8 38 38 H 1.08993 * 109.46955 * 60.00042 * 12 11 8 39 39 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.58897 * 65.92386 * 21 7 6 41 41 H 1.08998 * 109.59042 * 186.35071 * 21 7 6 42 42 H 1.09005 * 109.49562 * 298.56881 * 22 4 2 43 43 H 1.08993 * 109.49923 * 58.66764 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5297 -2.1641 1.2489 6 6 2.0137 -2.8729 2.5178 7 7 3.4755 -2.7499 2.5999 8 16 4.4265 -4.0934 2.7813 9 8 3.5797 -5.0382 3.4213 10 8 5.5990 -3.6089 3.4214 11 6 4.7977 -4.6176 1.0849 12 6 5.6810 -5.8666 1.1188 13 6 5.9899 -6.3017 -0.2905 14 1 5.5953 -5.7436 -1.1267 15 6 6.7753 -7.4130 -0.5123 16 7 7.2553 -8.0929 0.5059 17 14 7.1576 -7.9528 -2.2593 18 1 8.4023 -7.2878 -2.7217 19 1 7.3416 -9.4260 -2.2930 20 1 6.0329 -7.5739 -3.1519 21 6 4.0771 -1.4116 2.5240 22 6 3.5704 -0.7204 1.2490 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6762 -0.2076 2.1391 31 1 1.9135 -2.6855 0.3720 32 1 0.4400 -2.1651 1.2248 33 1 1.7375 -3.9266 2.4757 34 1 1.5584 -2.4105 3.3935 35 1 5.3209 -3.8163 0.5632 36 1 3.8680 -4.8446 0.5631 37 1 6.6107 -5.6400 1.6407 38 1 5.1574 -6.6677 1.6404 39 1 7.8076 -8.8749 0.3499 40 1 3.7865 -0.8302 3.3990 41 1 5.1628 -1.5006 2.4861 42 1 3.9343 -1.2559 0.3721 43 1 3.9336 0.3069 1.2253 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173619392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:17 Heat of formation + Delta-G solvation = -104.711081 kcal Electronic energy + Delta-G solvation = -22162.979608 eV Core-core repulsion = 18948.038464 eV Total energy + Delta-G solvation = -3214.941144 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.23187 -36.63326 -35.71338 -35.35156 -33.87557 -31.25123 -31.14474 -30.82113 -27.42844 -25.60751 -24.64283 -23.11213 -21.76405 -20.73906 -19.92594 -18.53470 -17.57249 -16.51180 -15.87837 -15.52038 -14.99097 -14.79812 -14.53991 -14.51384 -14.22634 -14.15875 -13.35954 -13.33801 -12.99186 -12.67122 -12.47083 -12.45944 -12.03512 -11.74447 -11.71174 -11.55718 -11.43384 -11.42633 -11.15110 -11.07690 -11.03754 -10.94845 -10.67956 -10.43488 -10.37040 -10.28610 -10.26362 -9.72729 -9.28650 -8.71780 -8.49837 -6.11794 -4.17341 0.79494 3.06075 3.26165 3.32391 3.35093 4.31065 4.39092 4.49818 4.51308 4.57296 4.65555 4.80855 5.10626 5.11313 5.18282 5.23349 5.27138 5.34442 5.36420 5.41376 5.58377 5.61297 5.64499 5.68155 5.73461 5.76572 5.76770 5.83036 5.83829 6.01296 6.01387 6.07250 6.17772 6.27767 6.36994 6.51680 6.74431 7.31119 7.37307 7.81146 8.18542 8.86037 9.47358 10.99287 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.004429 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.412621 B = 6320.218009 C = 7201.877867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.079 4.079 5 C -0.135 4.135 6 C 0.123 3.877 7 N -1.006 6.006 8 S 2.590 3.410 9 O -0.966 6.966 10 O -0.966 6.966 11 C -0.589 4.589 12 C 0.028 3.972 13 C -0.519 4.519 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.891 5.891 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.122 3.878 22 C -0.135 4.135 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.265 0.735 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.565 17.759 0.163 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.097 4.097 5 C -0.174 4.174 6 C -0.003 4.003 7 N -0.843 5.843 8 S 2.689 3.311 9 O -0.956 6.956 10 O -0.956 6.956 11 C -0.722 4.722 12 C -0.011 4.011 13 C -0.559 4.559 14 H 0.079 0.921 15 C -0.145 4.145 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.003 4.003 22 C -0.174 4.174 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.215 17.255 1.101 21.169 hybrid contribution 0.164 -0.219 -1.661 1.683 sum -12.051 17.035 -0.560 20.875 Atomic orbital electron populations 1.21897 0.95424 1.01898 1.01417 1.21162 0.95603 0.96091 0.98367 1.21897 1.01332 0.95992 1.01418 1.21128 0.95180 0.95490 0.97911 1.22087 1.00848 0.95802 0.98622 1.21347 0.79409 1.01819 0.97715 1.57963 1.15878 1.20436 1.89979 1.05699 0.73474 0.72904 0.79019 1.93529 1.66768 1.61582 1.73718 1.93530 1.49092 1.79257 1.73718 1.30492 1.10376 1.10837 1.20484 1.18962 0.93641 0.88493 1.00025 1.21000 1.31917 1.11775 0.91185 0.92095 1.25064 0.95630 0.96300 0.97470 1.69952 1.34076 1.18539 1.30311 0.86476 0.78767 0.77879 0.84196 1.20466 1.20997 1.19784 1.21445 0.98359 0.82844 0.97665 1.22163 0.95665 1.00959 0.98565 0.93033 0.92261 0.92855 0.91127 0.92257 0.93026 0.92860 0.91136 0.91175 0.90653 0.89165 0.91578 0.86379 0.86382 0.94917 0.94906 0.92534 0.91537 0.89126 0.91149 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.84 37.16 0.33 -0.74 16 2 C -0.09 -0.73 2.51 -90.62 -0.23 -0.96 16 3 C -0.15 -1.06 8.84 37.16 0.33 -0.74 16 4 C -0.08 -0.68 1.74 -90.58 -0.16 -0.84 16 5 C -0.13 -1.28 5.04 -26.61 -0.13 -1.41 16 6 C 0.12 1.43 6.31 -3.71 -0.02 1.40 16 7 N -1.01 -13.85 3.21 -113.27 -0.36 -14.22 16 8 S 2.59 47.68 5.41 -107.50 -0.58 47.09 16 9 O -0.97 -20.33 16.72 -57.54 -0.96 -21.30 16 10 O -0.97 -20.33 16.72 -57.54 -0.96 -21.29 16 11 C -0.59 -11.42 6.12 37.16 0.23 -11.20 16 12 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 13 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 17 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 C 0.12 1.42 6.34 -3.48 -0.02 1.40 16 22 C -0.13 -1.28 5.06 -26.39 -0.13 -1.41 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.42 6.40 -51.93 -0.33 0.09 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.42 6.40 -51.93 -0.33 0.09 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.60 6.36 -51.93 -0.33 0.27 16 33 H 0.09 1.11 7.10 -51.93 -0.37 0.74 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 36 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 37 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 1.12 7.09 -51.93 -0.37 0.75 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.60 6.36 -51.93 -0.33 0.27 16 LS Contribution 346.30 15.07 5.22 5.22 Total: -1.00 -33.70 346.30 -9.82 -43.52 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.52 Total: -2.28 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: -0.36 Total: -27.10 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.37 Total: -40.10 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -1.92 Total: -42.59 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 47.68 SS G_CDS: -0.58 Total: 47.09 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.70 -9.82 -43.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173619392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.186 kcal (2) G-P(sol) polarization free energy of solvation -33.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds