Wall clock time and date at job start Tue Mar 31 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47142 * 2 1 4 4 C 1.52996 * 109.49444 * 299.92954 * 3 2 1 5 5 C 1.53033 * 109.49779 * 59.99719 * 3 2 1 6 6 C 1.53050 * 109.53643 * 181.35117 * 5 3 2 7 7 C 1.53197 * 109.31100 * 298.63213 * 6 5 3 8 8 N 1.46923 * 108.77250 * 54.63589 * 7 6 5 9 9 S 1.65603 * 120.63153 * 126.36875 * 8 7 6 10 10 O 1.42102 * 104.27650 * 333.92782 * 9 8 7 11 11 O 1.42098 * 104.27898 * 206.06841 * 9 8 7 12 12 C 1.81408 * 104.44779 * 89.99548 * 9 8 7 13 13 C 1.53000 * 109.46799 * 180.02562 * 12 9 8 14 14 C 1.50703 * 109.46912 * 180.02562 * 13 12 9 15 15 H 1.07996 * 119.99751 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00094 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47171 * 89.99544 * 18 16 14 20 20 H 1.48500 * 109.46632 * 209.99795 * 18 16 14 21 21 H 1.48494 * 109.47053 * 329.99231 * 18 16 14 22 22 C 1.46927 * 118.74017 * 306.63984 * 8 7 6 23 23 H 1.08996 * 109.47441 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47505 * 300.00453 * 1 2 3 25 25 H 1.09005 * 109.46568 * 60.00322 * 1 2 3 26 26 H 1.09001 * 109.47505 * 239.99547 * 2 1 3 27 27 H 1.09007 * 109.47084 * 119.99673 * 2 1 3 28 28 H 1.09004 * 109.46825 * 180.02562 * 4 3 2 29 29 H 1.09007 * 109.47519 * 300.06399 * 4 3 2 30 30 H 1.09003 * 109.47504 * 60.06902 * 4 3 2 31 31 H 1.08999 * 109.46420 * 61.33494 * 5 3 2 32 32 H 1.08998 * 109.46283 * 301.36428 * 5 3 2 33 33 H 1.08992 * 109.49833 * 178.68476 * 6 5 3 34 34 H 1.08997 * 109.52197 * 58.59924 * 6 5 3 35 35 H 1.09006 * 109.58824 * 294.84982 * 7 6 5 36 36 H 1.08990 * 109.70313 * 174.49138 * 7 6 5 37 37 H 1.09001 * 109.46823 * 60.00309 * 12 9 8 38 38 H 1.08992 * 109.47429 * 300.00345 * 12 9 8 39 39 H 1.09002 * 109.47398 * 300.00340 * 13 12 9 40 40 H 1.09001 * 109.47194 * 60.00520 * 13 12 9 41 41 H 0.97000 * 120.00333 * 179.97438 * 17 16 14 42 42 H 1.09008 * 109.58553 * 173.14551 * 22 8 7 43 43 H 1.09004 * 109.58911 * 293.56893 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5317 2.1637 -1.2499 5 6 1.5301 2.1645 1.2493 6 6 2.0119 3.6171 1.2333 7 6 3.5435 3.6432 1.2510 8 7 4.0432 2.8294 0.1345 9 16 5.1169 3.4618 -0.9563 10 8 4.8693 4.8606 -0.9210 11 8 4.8975 2.7086 -2.1411 12 6 6.7476 3.0862 -0.2560 13 6 7.8377 3.6270 -1.1834 14 6 9.1925 3.3144 -0.6020 15 1 9.2683 2.7829 0.3350 16 6 10.3350 3.7071 -1.2663 17 7 10.2427 4.3540 -2.4077 18 14 12.0143 3.3190 -0.5460 19 1 12.4750 1.9993 -1.0472 20 1 12.9823 4.3688 -0.9536 21 1 11.9206 3.2807 0.9355 22 6 3.5676 1.4457 0.0005 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.8957 3.1912 -1.2497 29 1 1.8951 1.6491 -2.1395 30 1 0.4417 2.1651 -1.2507 31 1 1.9129 1.6649 2.1392 32 1 0.4404 2.1436 1.2616 33 1 1.6290 4.1371 2.1114 34 1 1.6500 4.1110 0.3315 35 1 3.9051 3.2318 2.1935 36 1 3.8949 4.6690 1.1413 37 1 6.8594 2.0067 -0.1541 38 1 6.8391 3.5550 0.7237 39 1 7.7464 3.1585 -2.1634 40 1 7.7258 4.7065 -1.2849 41 1 11.0465 4.6306 -2.8749 42 1 3.9329 1.0227 -0.9354 43 1 3.9312 0.8515 0.8389 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173910749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:54 Heat of formation + Delta-G solvation = -98.743930 kcal Electronic energy + Delta-G solvation = -22441.291303 eV Core-core repulsion = 19226.608914 eV Total energy + Delta-G solvation = -3214.682389 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.66500 -36.64330 -35.42491 -34.94581 -33.87662 -31.93789 -31.14293 -30.00808 -27.18176 -25.61161 -24.96310 -23.63173 -21.88607 -21.36549 -18.73409 -18.16512 -17.54423 -16.53606 -15.89805 -15.56993 -15.11370 -14.96218 -14.54837 -14.47231 -14.27421 -13.97325 -13.51838 -13.35277 -12.94315 -12.51094 -12.24789 -12.14370 -11.94583 -11.78964 -11.72373 -11.55190 -11.52913 -11.39484 -11.09002 -11.07577 -10.95156 -10.86220 -10.68301 -10.41351 -10.37025 -10.29301 -10.22126 -9.73957 -9.28954 -8.67183 -8.50056 -6.12041 -4.17669 0.78627 3.06534 3.26233 3.32347 3.35235 4.30937 4.39282 4.47403 4.52065 4.68428 4.72995 4.95553 5.02438 5.10794 5.21595 5.23027 5.27263 5.39949 5.43967 5.56310 5.59800 5.68273 5.71354 5.74075 5.77599 5.80154 5.83967 5.91128 5.94463 6.01555 6.02852 6.13823 6.23355 6.37024 6.45374 6.50498 6.75558 7.30494 7.36640 7.80950 8.18175 8.85739 9.47040 10.99004 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031099 B = 0.003891 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.120459 B = 7193.454742 C = 7307.012486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.072 4.072 4 C -0.145 4.145 5 C -0.106 4.106 6 C -0.134 4.134 7 C 0.118 3.882 8 N -1.004 6.004 9 S 2.589 3.411 10 O -0.965 6.965 11 O -0.963 6.963 12 C -0.590 4.590 13 C 0.028 3.972 14 C -0.520 4.520 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.891 5.891 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.127 3.873 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.265 0.735 42 H 0.094 0.906 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.809 -6.732 8.403 21.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.073 4.073 4 C -0.202 4.202 5 C -0.144 4.144 6 C -0.173 4.173 7 C -0.008 4.008 8 N -0.840 5.840 9 S 2.688 3.312 10 O -0.956 6.956 11 O -0.953 6.953 12 C -0.723 4.723 13 C -0.011 4.011 14 C -0.560 4.560 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 C 0.002 3.998 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.967 -6.183 7.458 21.298 hybrid contribution 1.359 -0.470 0.874 1.683 sum -17.608 -6.653 8.332 20.584 Atomic orbital electron populations 1.21864 0.95875 1.01297 1.02070 1.21523 0.96030 0.95369 1.02194 1.20776 0.95061 0.95356 0.96155 1.21965 1.00447 1.00959 0.96873 1.21588 1.00378 0.95311 0.97105 1.21918 0.95674 0.97142 1.02568 1.21388 0.94499 0.95849 0.89014 1.57889 1.60224 1.21575 1.44317 1.05709 0.76917 0.74150 0.74424 1.93523 1.84491 1.31161 1.86383 1.93524 1.84887 1.72544 1.44345 1.30503 1.18929 1.10627 1.12274 1.18964 0.91823 0.96945 0.93396 1.21008 0.89729 1.37692 1.07529 0.92061 1.25074 0.99623 0.94890 0.94914 1.69956 1.29346 1.38307 1.15257 0.86466 0.83296 0.78143 0.79366 1.20451 1.20991 1.19757 1.21382 0.93708 0.81995 1.02733 0.93064 0.92548 0.92368 0.91584 0.91887 0.92360 0.92166 0.92592 0.91949 0.91636 0.91152 0.91050 0.91748 0.88897 0.86345 0.86357 0.94899 0.94909 0.92526 0.88796 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.21 37.16 0.34 -0.80 16 2 C -0.11 -0.96 5.00 -26.73 -0.13 -1.09 16 3 C -0.07 -0.73 0.54 -154.61 -0.08 -0.82 16 4 C -0.15 -1.68 7.62 37.16 0.28 -1.40 16 5 C -0.11 -0.95 4.40 -26.69 -0.12 -1.07 16 6 C -0.13 -1.34 5.74 -26.60 -0.15 -1.49 16 7 C 0.12 1.38 6.43 -3.71 -0.02 1.35 16 8 N -1.00 -13.86 2.67 -113.76 -0.30 -14.16 16 9 S 2.59 47.58 5.45 -107.50 -0.59 47.00 16 10 O -0.97 -20.21 16.59 -57.54 -0.95 -21.17 16 11 O -0.96 -19.95 16.58 -57.54 -0.95 -20.91 16 12 C -0.59 -11.56 6.12 37.16 0.23 -11.33 16 13 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 14 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 18 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 C 0.13 1.52 5.07 -3.93 -0.02 1.50 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.39 6.40 -51.93 -0.33 0.06 16 25 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.77 5.97 -51.93 -0.31 0.46 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.55 6.44 -51.93 -0.33 0.21 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.53 6.36 -51.93 -0.33 0.20 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.79 6.34 -51.93 -0.33 0.47 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.17 6.86 -51.93 -0.36 0.81 16 37 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 38 H 0.12 2.10 8.14 -51.93 -0.42 1.67 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.09 1.22 6.85 -51.92 -0.36 0.87 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -33.44 340.52 -9.48 -42.92 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.30 Total: -1.28 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: -0.23 Total: -27.88 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.43 Total: -40.09 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -1.91 Total: -42.07 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 47.58 SS G_CDS: -0.59 Total: 47.00 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.44 -9.48 -42.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173910749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.827 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds