Wall clock time and date at job start Tue Mar 31 2020 06:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 119.99797 * 2 1 4 4 C 1.53001 * 109.47017 * 125.00462 * 3 2 1 5 5 C 1.53004 * 109.47255 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47105 * 180.02562 * 5 4 3 7 7 O 1.21277 * 119.99960 * 359.97438 * 6 5 4 8 8 N 1.34769 * 119.99776 * 180.02562 * 6 5 4 9 9 C 1.46508 * 120.00011 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47103 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93247 * 90.00118 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47375 * 119.99795 * 19 17 15 22 22 H 1.48506 * 109.47301 * 239.99793 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.07992 * 119.99829 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99797 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.00228 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46987 * 5.00428 * 3 2 1 29 29 H 1.08994 * 109.47703 * 245.00415 * 3 2 1 30 30 H 1.08998 * 109.47318 * 59.99663 * 4 3 2 31 31 H 1.09005 * 109.46796 * 299.99943 * 4 3 2 32 32 H 1.08998 * 109.47672 * 59.99342 * 5 4 3 33 33 H 1.09005 * 109.46733 * 299.99443 * 5 4 3 34 34 H 0.97001 * 120.00514 * 359.97438 * 8 6 5 35 35 H 1.08998 * 109.46632 * 59.99915 * 9 8 6 36 36 H 1.08996 * 109.47144 * 299.99646 * 9 8 6 37 37 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 38 38 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 39 39 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 41 41 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7996 2.6583 1.1820 6 6 4.7571 2.6856 2.3455 7 8 4.8213 1.7385 3.1002 8 7 5.5412 3.7628 2.5477 9 6 6.4717 3.7896 3.6791 10 6 7.2247 5.0949 3.6794 11 6 6.7193 6.1830 4.3672 12 6 7.4072 7.3805 4.3699 13 6 8.6077 7.4914 3.6804 14 8 9.2866 8.6669 3.6815 15 6 8.8022 9.6527 4.4635 16 1 7.8684 9.5161 4.9885 17 6 9.5031 10.8421 4.5936 18 7 10.6409 11.0085 3.9544 19 14 8.8324 12.2076 5.6775 20 1 7.5471 11.7739 6.2816 21 1 9.8091 12.5096 6.7545 22 1 8.6075 13.4252 4.8576 23 6 9.1096 6.3988 2.9854 24 6 8.4196 5.2024 2.9913 25 1 -0.5399 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8501 -0.9352 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6212 1.4027 -0.9313 30 1 3.7400 0.5065 1.0920 31 1 2.4773 1.2355 2.1130 32 1 3.0945 3.4847 1.2718 33 1 4.3574 2.7563 0.2506 34 1 5.4897 4.5205 1.9443 35 1 7.1771 2.9636 3.5889 36 1 5.9141 3.6913 4.6105 37 1 5.7859 6.0960 4.9036 38 1 7.0122 8.2297 4.9076 39 1 11.1309 11.8406 4.0451 40 1 10.0405 6.4832 2.4446 41 1 8.8116 4.3510 2.4548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175540468.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:04 Heat of formation + Delta-G solvation = -41.852445 kcal Electronic energy + Delta-G solvation = -21054.107139 eV Core-core repulsion = 17706.447798 eV Total energy + Delta-G solvation = -3347.659340 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.80756 -39.05562 -36.95817 -36.21863 -34.40027 -32.66517 -32.36479 -30.32354 -30.03400 -27.59406 -25.79989 -24.63545 -22.26113 -22.07716 -20.65248 -20.35810 -19.99090 -18.10154 -17.32981 -16.87593 -16.20172 -15.87975 -15.34713 -14.89634 -14.63944 -14.33213 -14.20959 -13.80300 -13.70517 -13.59329 -13.40475 -12.93489 -12.81156 -12.51738 -12.16503 -11.93711 -11.78879 -11.66965 -11.43187 -11.19852 -11.00260 -10.95541 -10.80215 -10.71475 -10.49220 -9.86754 -9.62405 -9.44728 -8.96803 -8.93252 -8.31239 -7.34884 -6.55082 -4.13957 1.96633 2.05432 2.10346 2.67254 3.05706 3.08242 3.13794 3.40293 3.88563 4.43990 4.49955 4.64134 4.74307 4.93019 4.99288 5.00399 5.13635 5.19788 5.23689 5.34612 5.40744 5.43240 5.50510 5.62789 5.63956 5.78129 5.89219 5.92334 6.08169 6.09870 6.32230 6.32481 6.46042 6.51177 6.57922 6.77915 6.93534 7.11926 7.24908 7.32882 7.59723 7.69556 7.89696 8.26986 8.90375 9.58390 10.62488 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032127 B = 0.002225 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.330645 B =12583.660310 C =12927.923611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C -0.097 4.097 4 C -0.099 4.099 5 C -0.142 4.142 6 C 0.507 3.493 7 O -0.550 6.550 8 N -0.724 5.724 9 C 0.178 3.822 10 C -0.215 4.215 11 C -0.051 4.051 12 C -0.237 4.237 13 C 0.160 3.840 14 O -0.174 6.174 15 C -0.393 4.393 16 H 0.094 0.906 17 C 0.040 3.960 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.195 4.195 24 C -0.055 4.055 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.402 0.598 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.271 0.729 40 H 0.118 0.882 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.268 -14.147 -6.417 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.168 4.168 3 C -0.134 4.134 4 C -0.137 4.137 5 C -0.183 4.183 6 C 0.293 3.707 7 O -0.428 6.428 8 N -0.375 5.375 9 C 0.056 3.944 10 C -0.216 4.216 11 C -0.070 4.070 12 C -0.256 4.256 13 C 0.106 3.894 14 O -0.076 6.076 15 C -0.469 4.469 16 H 0.111 0.889 17 C -0.165 4.165 18 N -0.493 5.493 19 Si 0.767 3.233 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.201 1.201 23 C -0.214 4.214 24 C -0.074 4.074 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.236 0.764 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.146 0.854 39 H 0.081 0.919 40 H 0.136 0.864 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.816 -14.547 -5.996 20.939 hybrid contribution -0.319 1.159 0.295 1.238 sum -14.135 -13.388 -5.701 20.286 Atomic orbital electron populations 1.23851 0.95998 1.01783 1.01954 1.22974 0.96024 0.98635 0.99174 1.20816 0.98255 0.95448 0.98877 1.21271 0.97644 0.96311 0.98454 1.21713 0.98353 1.00533 0.97652 1.20734 0.81122 0.82360 0.86437 1.90687 1.68724 1.35617 1.47749 1.46397 1.40564 1.19478 1.31070 1.19967 0.90664 0.95174 0.88610 1.19215 0.98808 0.95311 1.08262 1.20643 0.97830 0.92071 0.96462 1.21165 0.97844 0.99009 1.07604 1.19440 0.90604 0.86936 0.92468 1.83977 1.48235 1.17252 1.58144 1.21408 1.07342 0.92619 1.25577 0.88855 1.25327 0.95470 0.98031 0.97669 1.70042 1.13508 1.26205 1.39557 0.85623 0.78879 0.79742 0.79058 1.19038 1.20041 1.20071 1.20216 1.02537 0.91849 1.06844 1.20533 0.93789 0.96118 0.96924 0.88635 0.88641 0.87387 0.91432 0.90870 0.91076 0.91124 0.88946 0.88907 0.76388 0.91628 0.91671 0.87418 0.85403 0.91912 0.86359 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.36 14.32 29.01 0.42 -0.95 16 2 C -0.15 -1.10 9.52 -36.03 -0.34 -1.44 16 3 C -0.10 -0.67 5.66 -27.89 -0.16 -0.83 16 4 C -0.10 -0.86 4.49 -26.73 -0.12 -0.98 16 5 C -0.14 -1.19 5.70 -27.88 -0.16 -1.35 16 6 C 0.51 6.24 7.83 -10.99 -0.09 6.16 16 7 O -0.55 -8.89 15.98 5.56 0.09 -8.80 16 8 N -0.72 -8.66 5.55 -61.47 -0.34 -9.00 16 9 C 0.18 2.47 5.80 -5.19 -0.03 2.44 16 10 C -0.21 -3.40 5.25 -104.58 -0.55 -3.94 16 11 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 12 C -0.24 -4.86 9.17 -39.39 -0.36 -5.23 16 13 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 14 O -0.17 -4.78 9.76 0.05 0.00 -4.78 16 15 C -0.39 -10.64 9.49 30.89 0.29 -10.35 16 16 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -24.53 13.67 55.48 0.76 -23.78 16 19 Si 0.94 19.93 29.55 -169.99 -5.02 14.91 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 C -0.20 -3.89 9.99 -39.39 -0.39 -4.28 16 24 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 25 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 26 H 0.10 0.56 8.06 -52.49 -0.42 0.14 16 27 H 0.11 0.74 8.06 -52.49 -0.42 0.32 16 28 H 0.07 0.43 7.79 -51.93 -0.40 0.03 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.40 4.16 8.46 -40.82 -0.35 3.82 16 35 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 36 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 39 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 354.89 15.07 5.35 5.35 Total: -1.00 -31.06 354.89 -7.71 -38.77 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.93 Total: 6.23 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -2.62 Total: -18.90 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.42 Total: -32.77 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.09 Total: -13.58 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.06 -7.71 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175540468.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.081 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds