Wall clock time and date at job start Tue Mar 31 2020 06:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 119.99797 * 2 1 4 4 C 1.53001 * 109.47017 * 125.00462 * 3 2 1 5 5 C 1.53004 * 109.47255 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47105 * 180.02562 * 5 4 3 7 7 O 1.21277 * 119.99960 * 359.97438 * 6 5 4 8 8 N 1.34769 * 119.99776 * 180.02562 * 6 5 4 9 9 C 1.46508 * 120.00011 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47103 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93247 * 90.00118 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47375 * 119.99795 * 19 17 15 22 22 H 1.48506 * 109.47301 * 239.99793 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.07992 * 119.99829 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.99797 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.00228 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46987 * 5.00428 * 3 2 1 29 29 H 1.08994 * 109.47703 * 245.00415 * 3 2 1 30 30 H 1.08998 * 109.47318 * 59.99663 * 4 3 2 31 31 H 1.09005 * 109.46796 * 299.99943 * 4 3 2 32 32 H 1.08998 * 109.47672 * 59.99342 * 5 4 3 33 33 H 1.09005 * 109.46733 * 299.99443 * 5 4 3 34 34 H 0.97001 * 120.00514 * 359.97438 * 8 6 5 35 35 H 1.08998 * 109.46632 * 59.99915 * 9 8 6 36 36 H 1.08996 * 109.47144 * 299.99646 * 9 8 6 37 37 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 38 38 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 39 39 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 41 41 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7996 2.6583 1.1820 6 6 4.7571 2.6856 2.3455 7 8 4.8213 1.7385 3.1002 8 7 5.5412 3.7628 2.5477 9 6 6.4717 3.7896 3.6791 10 6 7.2247 5.0949 3.6794 11 6 6.7193 6.1830 4.3672 12 6 7.4072 7.3805 4.3699 13 6 8.6077 7.4914 3.6804 14 8 9.2866 8.6669 3.6815 15 6 8.8022 9.6527 4.4635 16 1 7.8684 9.5161 4.9885 17 6 9.5031 10.8421 4.5936 18 7 10.6409 11.0085 3.9544 19 14 8.8324 12.2076 5.6775 20 1 7.5471 11.7739 6.2816 21 1 9.8091 12.5096 6.7545 22 1 8.6075 13.4252 4.8576 23 6 9.1096 6.3988 2.9854 24 6 8.4196 5.2024 2.9913 25 1 -0.5399 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8501 -0.9352 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6212 1.4027 -0.9313 30 1 3.7400 0.5065 1.0920 31 1 2.4773 1.2355 2.1130 32 1 3.0945 3.4847 1.2718 33 1 4.3574 2.7563 0.2506 34 1 5.4897 4.5205 1.9443 35 1 7.1771 2.9636 3.5889 36 1 5.9141 3.6913 4.6105 37 1 5.7859 6.0960 4.9036 38 1 7.0122 8.2297 4.9076 39 1 11.1309 11.8406 4.0451 40 1 10.0405 6.4832 2.4446 41 1 8.8116 4.3510 2.4548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175540468.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:03 Heat of formation + Delta-G solvation = -60.680195 kcal Electronic energy + Delta-G solvation = -21054.923571 eV Core-core repulsion = 17706.447798 eV Total energy + Delta-G solvation = -3348.475773 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.02482 -40.51290 -38.52815 -36.87041 -35.61009 -34.28102 -33.31590 -31.85166 -31.39877 -28.46677 -27.49664 -25.97668 -23.65433 -23.05484 -22.10544 -21.21164 -20.62264 -19.87716 -18.90791 -18.03258 -16.99434 -16.97638 -16.48154 -16.28411 -16.02366 -15.71299 -15.53364 -15.28943 -14.84855 -14.66280 -14.39479 -14.26954 -14.16401 -13.68580 -13.43301 -13.15709 -13.02338 -12.62735 -12.53767 -12.42502 -12.34686 -12.24882 -12.09168 -11.74188 -11.59232 -11.20699 -10.95538 -10.76670 -10.16573 -10.03466 -9.81812 -9.01204 -8.48947 -6.17093 0.54228 0.56752 1.35872 1.42928 1.44409 1.53674 1.72177 2.16543 2.35954 2.86149 3.16465 3.48552 3.82183 3.89464 3.94256 4.01927 4.11494 4.16731 4.36200 4.41812 4.44779 4.56075 4.65247 4.71564 4.77549 4.80441 4.85405 4.97063 5.03609 5.10294 5.14030 5.25729 5.26674 5.40889 5.49865 5.53106 5.68485 5.74461 5.80872 5.93414 6.01024 6.15224 6.64555 6.96041 7.32069 7.75223 8.74047 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032127 B = 0.002225 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.330645 B =12583.660310 C =12927.923611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C -0.091 4.091 4 C -0.095 4.095 5 C -0.135 4.135 6 C 0.506 3.494 7 O -0.591 6.591 8 N -0.718 5.718 9 C 0.183 3.817 10 C -0.181 4.181 11 C -0.047 4.047 12 C -0.244 4.244 13 C 0.122 3.878 14 O -0.229 6.229 15 C -0.413 4.413 16 H 0.104 0.896 17 C -0.022 4.022 18 N -0.918 5.918 19 Si 1.018 2.982 20 H -0.251 1.251 21 H -0.270 1.270 22 H -0.268 1.268 23 C -0.204 4.204 24 C -0.044 4.044 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.413 0.587 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.138 0.862 38 H 0.120 0.880 39 H 0.273 0.727 40 H 0.116 0.884 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.737 -15.528 -6.731 23.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.183 4.183 3 C -0.128 4.128 4 C -0.133 4.133 5 C -0.174 4.174 6 C 0.294 3.706 7 O -0.472 6.472 8 N -0.369 5.369 9 C 0.060 3.940 10 C -0.182 4.182 11 C -0.065 4.065 12 C -0.263 4.263 13 C 0.071 3.929 14 O -0.135 6.135 15 C -0.489 4.489 16 H 0.121 0.879 17 C -0.220 4.220 18 N -0.556 5.556 19 Si 0.838 3.162 20 H -0.174 1.174 21 H -0.195 1.195 22 H -0.193 1.193 23 C -0.223 4.223 24 C -0.063 4.063 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.249 0.751 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.156 0.844 38 H 0.138 0.862 39 H 0.082 0.918 40 H 0.134 0.866 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.325 -15.970 -6.333 23.699 hybrid contribution 0.299 1.180 0.328 1.260 sum -16.026 -14.790 -6.006 22.620 Atomic orbital electron populations 1.24016 0.96005 1.02469 1.01225 1.23101 0.96385 0.98984 0.99861 1.20775 0.98033 0.95510 0.98471 1.21204 0.97541 0.96172 0.98405 1.21750 0.97961 1.00966 0.96729 1.21396 0.80991 0.81375 0.86788 1.90680 1.69955 1.37110 1.49456 1.46239 1.40085 1.20017 1.30603 1.19847 0.90995 0.93558 0.89636 1.19501 0.97870 0.95640 1.05230 1.20937 0.98506 0.90862 0.96207 1.21247 0.97396 1.00254 1.07376 1.19995 0.91798 0.86812 0.94289 1.83947 1.50335 1.18927 1.60329 1.21872 1.07929 0.93195 1.25915 0.87886 1.26584 0.95705 1.00563 0.99136 1.70181 1.15647 1.27300 1.42506 0.84530 0.78678 0.76059 0.76970 1.17399 1.19512 1.19342 1.20453 1.02974 0.92334 1.06578 1.20880 0.93424 0.95669 0.96293 0.88008 0.88028 0.87494 0.90536 0.89697 0.92497 0.92982 0.86698 0.86453 0.75116 0.91206 0.91500 0.84373 0.86198 0.91800 0.86640 0.83504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.39 14.32 67.77 0.97 -1.42 16 2 C -0.17 -2.14 9.52 25.64 0.24 -1.90 16 3 C -0.09 -1.03 5.66 29.85 0.17 -0.86 16 4 C -0.10 -1.45 4.49 30.60 0.14 -1.32 16 5 C -0.13 -1.77 5.70 29.85 0.17 -1.60 16 6 C 0.51 10.91 7.83 87.66 0.69 11.59 16 7 O -0.59 -17.95 15.98 -3.02 -0.05 -18.00 16 8 N -0.72 -14.41 5.55 -466.80 -2.59 -17.00 16 9 C 0.18 4.37 5.80 85.63 0.50 4.86 16 10 C -0.18 -5.12 5.25 -19.84 -0.10 -5.23 16 11 C -0.05 -1.47 9.69 22.25 0.22 -1.26 16 12 C -0.24 -9.93 9.17 22.39 0.21 -9.72 16 13 C 0.12 5.76 6.65 22.58 0.15 5.91 16 14 O -0.23 -13.34 9.76 -22.72 -0.22 -13.56 16 15 C -0.41 -23.33 9.49 67.92 0.64 -22.69 16 16 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 17 C -0.02 -1.22 5.49 84.84 0.47 -0.76 16 18 N -0.92 -55.23 13.67 21.62 0.30 -54.93 16 19 Si 1.02 41.78 29.55 68.60 2.03 43.80 16 20 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 22 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 23 C -0.20 -8.10 9.99 22.39 0.22 -7.88 16 24 C -0.04 -1.35 9.69 22.25 0.22 -1.13 16 25 H 0.10 1.06 7.84 -2.91 -0.02 1.04 16 26 H 0.10 1.04 8.06 -2.91 -0.02 1.02 16 27 H 0.11 1.36 8.06 -2.91 -0.02 1.33 16 28 H 0.08 0.74 7.79 -2.39 -0.02 0.72 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 31 H 0.05 0.98 8.10 -2.38 -0.02 0.96 16 32 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.41 6.76 8.46 -92.71 -0.78 5.98 16 35 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 36 H 0.07 1.65 8.08 -2.39 -0.02 1.64 16 37 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.12 5.02 5.64 -2.91 -0.02 5.00 16 39 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 40 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -72.00 354.89 4.59 -67.40 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.24 Total: 25.66 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 4.89 Total: -33.37 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -2.29 Total: -71.93 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.27 Total: -31.57 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -72.00 4.59 -67.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175540468.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.723 kcal (2) G-P(sol) polarization free energy of solvation -71.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds